Lsi06G005800 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G005800
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 7755351 .. 7755623 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGGCCGCGACACCAACGTCAGCTCTCTCAAGTTCTTCCGCCGGACCTGATCTCCGGCGAAGATCCGGCTCAGATCTTGGACTTCGGCAGGGGAGCCGCCGGAGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAGCTTCTGCAAATGCGGCTGCCACCGCCGCCACCGCCGTCGCCGTACTTCAGCGGTCCAAGAATCCCGCCGGTCAGGAAGGCTCCGGCGCCAGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGA

mRNA sequence

ATGCCTCGGCCGCGACACCAACGTCAGCTCTCTCAAGTTCTTCCGCCGGACCTGATCTCCGGCGAAGATCCGGCTCAGATCTTGGACTTCGGCAGGGGAGCCGCCGGAGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAGCTTCTGCAAATGCGGCTGCCACCGCCGCCACCGCCGTCGCCGTACTTCAGCGGTCCAAGAATCCCGCCGGTCAGGAAGGCTCCGGCGCCAGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGA

Coding sequence (CDS)

ATGCCTCGGCCGCGACACCAACGTCAGCTCTCTCAAGTTCTTCCGCCGGACCTGATCTCCGGCGAAGATCCGGCTCAGATCTTGGACTTCGGCAGGGGAGCCGCCGGAGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAGCTTCTGCAAATGCGGCTGCCACCGCCGCCACCGCCGTCGCCGTACTTCAGCGGTCCAAGAATCCCGCCGGTCAGGAAGGCTCCGGCGCCAGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGA

Protein sequence

MPRPRHQRQLSQVLPPDLISGEDPAQILDFGRGAAGAVSGQPHQASEASANAAATAATAVAVLQRSKNPAGQEGSGASHFPQLPKTPPST
Homology
[Close]
BLAST of Lsi06G005800 vs. TrEMBL
Match: A0A0A0M0A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-29
Identity = 74/90 (82.22%), Postives = 77/90 (85.56%), Query Frame = 1 

Query: 1  MPRPRHQRQLSQVLPPDLISGEDPAQILDFGRGAAGAVSGQPHQASEASANAAATAATAV 60
          MPRPRHQRQLSQVLPPD IS EDP+QILDF  G AGAVSGQPHQ S+A+ANAAA AA A 
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60

Query: 61 AVLQRSKNPAGQEGSGASHFPQLPKTPPST 91
           VLQRSKNPAGQEGSGA HF QLPKT PST
Sbjct: 61 -VLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

[Close]
BLAST of Lsi06G005800 vs. NCBI nr
Match: gi|700211451|gb|KGN66547.1| (hypothetical protein Csa_1G629040 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 5.7e-29
Identity = 74/90 (82.22%), Postives = 77/90 (85.56%), Query Frame = 1 

Query: 1  MPRPRHQRQLSQVLPPDLISGEDPAQILDFGRGAAGAVSGQPHQASEASANAAATAATAV 60
          MPRPRHQRQLSQVLPPD IS EDP+QILDF  G AGAVSGQPHQ S+A+ANAAA AA A 
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60

Query: 61 AVLQRSKNPAGQEGSGASHFPQLPKTPPST 91
           VLQRSKNPAGQEGSGA HF QLPKT PST
Sbjct: 61 -VLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

The following BLAST results are available for this feature:
BLAST of Lsi06G005800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi06G005800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0A1_CUCSA4.0e-2982.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629040 PE=4 SV=1[more]
BLAST of Lsi06G005800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi06G005800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211451|gb|KGN66547.1|5.7e-2982.22hypothetical protein Csa_1G629040 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G005800.1Lsi06G005800.1mRNA