Csa1G629040 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G629040
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 24832523 .. 24833094 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCATTCGCTCTCTCACTTTCTCCCTCTAAAATTCCCTCTCTCTCTCTCTCTCTCTCTAACTATGCCCCGCCCGCGACACCAACGTCAGCTCTCTCAAGTTCTCCCCCCGGACTTCATCTCCGCCGAGGATCCCTCTCAGATCTTGGACTTCTCTATCGGAGTCGCCGGTGCTGTTTCCGGCCAACCCCATCAGCCATCTCAAGCTACTGCAAATGCTGCTGCCGCAGCCGCCGCTGCCACCGTTCTTCAGCGGTCAAAGAATCCAGCAGGTCAGGAAGGCTCCGGCGCCGGTCACTTCTCTCAGCTTCCAAAAACGGCGCCGTCTACTTGAACACCCAACTCTCCGTCTGTCTTGAAACTTTTTTTTTTTCTTTTTTTACTTTAATTCTCTCTCTCTAGATTTCATGTCTTTGTAATGTTAGTTTTTGTTTTTCTTTTAGGTCAATGAGAGATCCTTTCTCTCTTTTATCTCAAACCCAGAAATAAATTTGATGAAATGGAAGAAGGGTTGTTCATGTGGATCTTCATCTCGGAATTTCATCGCTAATTTAATCATAGTTTAGCAGAT

mRNA sequence

ATGCCCCGCCCGCGACACCAACGTCAGCTCTCTCAAGTTCTCCCCCCGGACTTCATCTCCGCCGAGGATCCCTCTCAGATCTTGGACTTCTCTATCGGAGTCGCCGGTGCTGTTTCCGGCCAACCCCATCAGCCATCTCAAGCTACTGCAAATGCTGCTGCCGCAGCCGCCGCTGCCACCGTTCTTCAGCGGTCAAAGAATCCAGCAGGTCAGGAAGGCTCCGGCGCCGGTCACTTCTCTCAGCTTCCAAAAACGGCGCCGTCTACTTGA

Coding sequence (CDS)

ATGCCCCGCCCGCGACACCAACGTCAGCTCTCTCAAGTTCTCCCCCCGGACTTCATCTCCGCCGAGGATCCCTCTCAGATCTTGGACTTCTCTATCGGAGTCGCCGGTGCTGTTTCCGGCCAACCCCATCAGCCATCTCAAGCTACTGCAAATGCTGCTGCCGCAGCCGCCGCTGCCACCGTTCTTCAGCGGTCAAAGAATCCAGCAGGTCAGGAAGGCTCCGGCGCCGGTCACTTCTCTCAGCTTCCAAAAACGGCGCCGTCTACTTGA

Protein sequence

MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAATVLQRSKNPAGQEGSGAGHFSQLPKTAPST*

Homology

[Close]

BLAST of Csa1G629040 vs. TrEMBL
Match: A0A0A0M0A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60
          MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60

Query: 61 VLQRSKNPAGQEGSGAGHFSQLPKTAPST 90
          VLQRSKNPAGQEGSGAGHFSQLPKTAPST
Sbjct: 61 VLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

[Close]

BLAST of Csa1G629040 vs. NCBI nr
Match: gi|700211451|gb|KGN66547.1| (hypothetical protein Csa_1G629040 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 5.9e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60
          MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60

Query: 61 VLQRSKNPAGQEGSGAGHFSQLPKTAPST 90
          VLQRSKNPAGQEGSGAGHFSQLPKTAPST
Sbjct: 61 VLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

The following BLAST results are available for this feature:

BLAST of Csa1G629040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0A1_CUCSA	4.1e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629040 PE=4 SV=1	[more]

BLAST of Csa1G629040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211451\|gb\|KGN66547.1\|	5.9e-42	100.00	hypothetical protein Csa_1G629040 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU089342	cucumber EST collection version 3.0	transcribed_cluster
CU097035	cucumber EST collection version 3.0	transcribed_cluster
CU119011	cucumber EST collection version 3.0	transcribed_cluster
CU132636	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G629040.2	Csa1G629040.2	mRNA
Csa1G629040.1	Csa1G629040.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU097035	CU097035	transcribed_cluster
CU119011	CU119011	transcribed_cluster
CU089342	CU089342	transcribed_cluster
CU132636	CU132636	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G629040	Cla007358	Watermelon (97103) v1	cuwmB022
Csa1G629040	MELO3C015118	Melon (DHL92) v3.5.1	cumeB041
Csa1G629040	ClCG03G012580	Watermelon (Charleston Gray)	cuwcgB046
Csa1G629040	Lsi06G005800	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G629040	MELO3C015118.2	Melon (DHL92) v3.6.1	cumedB033
Csa1G629040	Cla97C03G062890	Watermelon (97103) v2	cuwmbB042
Csa1G629040	CSPI01G31020	Wild cucumber (PI 183967)	cpicuB001
Csa1G629040	Cucsa.355590	Cucumber (Gy14) v1	cgycuB500
Csa1G629040	CmaCh11G008850	Cucurbita maxima (Rimu)	cmacuB085
Csa1G629040	CmaCh10G008930	Cucurbita maxima (Rimu)	cmacuB057
Csa1G629040	CmoCh10G009300	Cucurbita moschata (Rifu)	cmocuB047
Csa1G629040	CmoCh11G008960	Cucurbita moschata (Rifu)	cmocuB075
Csa1G629040	Cp4.1LG18g01900	Cucurbita pepo (Zucchini)	cpecuB349
Csa1G629040	Cp4.1LG04g12300	Cucurbita pepo (Zucchini)	cpecuB652

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G629040	Cucumber (Gy14) v2	cgybcuB002
Csa1G629040	Silver-seed gourd	carcuB0905
Csa1G629040	Silver-seed gourd	carcuB0982
Csa1G629040	Wax gourd	cuwgoB096