Cla007358 (gene) Watermelon (97103) v1

Overview
NameCla007358
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 19966237 .. 19966509 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGGCCGCGACACCAACGTCAGCTCTCCCAAGTTCTTCCGCCGGACCTGATTTCCGTCGAGGATCCATCTCAGATCTTGGACTTCGGCAGGGGAGTCGCCGGGGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAACTTCTGCAAATGCTGCTGCCACTGCCGCCGCCGCCGCTGCCGTACTTCAGCGGTCCAAGAATCCTGCCGGTCAGGAAGGCTCCGGCGCCGGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGA

mRNA sequence

ATGCCTCGGCCGCGACACCAACGTCAGCTCTCCCAAGTTCTTCCGCCGGACCTGATTTCCGTCGAGGATCCATCTCAGATCTTGGACTTCGGCAGGGGAGTCGCCGGGGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAACTTCTGCAAATGCTGCTGCCACTGCCGCCGCCGCCGCTGCCGTACTTCAGCGGTCCAAGAATCCTGCCGGTCAGGAAGGCTCCGGCGCCGGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGA

Coding sequence (CDS)

ATGCCTCGGCCGCGACACCAACGTCAGCTCTCCCAAGTTCTTCCGCCGGACCTGATTTCCGTCGAGGATCCATCTCAGATCTTGGACTTCGGCAGGGGAGTCGCCGGGGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAACTTCTGCAAATGCTGCTGCCACTGCCGCCGCCGCCGCTGCCGTACTTCAGCGGTCCAAGAATCCTGCCGGTCAGGAAGGCTCCGGCGCCGGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGA

Protein sequence

MPRPRHQRQLSQVLPPDLISVEDPSQILDFGRGVAGAVSGQPHQASETSANAAATAAAAAAVLQRSKNPAGQEGSGAGHFPQLPKTPPST
Homology
[Close]
BLAST of Cla007358 vs. TrEMBL
Match: A0A0A0M0A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-34
Identity = 78/90 (86.67%), Postives = 80/90 (88.89%), Query Frame = 1 

Query: 1  MPRPRHQRQLSQVLPPDLISVEDPSQILDFGRGVAGAVSGQPHQASETSANAAATAAAAA 60
          MPRPRHQRQLSQVLPPD IS EDPSQILDF  GVAGAVSGQPHQ S+ +ANAAA AAAAA
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAA-AAAAA 60

Query: 61 AVLQRSKNPAGQEGSGAGHFPQLPKTPPST 91
           VLQRSKNPAGQEGSGAGHF QLPKT PST
Sbjct: 61 TVLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

[Close]
BLAST of Cla007358 vs. NCBI nr
Match: gi|700211451|gb|KGN66547.1| (hypothetical protein Csa_1G629040 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-34
Identity = 78/90 (86.67%), Postives = 80/90 (88.89%), Query Frame = 1 

Query: 1  MPRPRHQRQLSQVLPPDLISVEDPSQILDFGRGVAGAVSGQPHQASETSANAAATAAAAA 60
          MPRPRHQRQLSQVLPPD IS EDPSQILDF  GVAGAVSGQPHQ S+ +ANAAA AAAAA
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAA-AAAAA 60

Query: 61 AVLQRSKNPAGQEGSGAGHFPQLPKTPPST 91
           VLQRSKNPAGQEGSGAGHF QLPKT PST
Sbjct: 61 TVLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

The following BLAST results are available for this feature:
BLAST of Cla007358 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0A1_CUCSA2.4e-3486.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629040 PE=4 SV=1[more]
BLAST of Cla007358 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211451|gb|KGN66547.1|3.5e-3486.67hypothetical protein Csa_1G629040 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU07371watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007358Cla007358.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU07371WMU07371transcribed_cluster