MELO3C014515 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014515
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B
Location	chr5 : 1787946 .. 1790190 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTCTTTTCGCGTTTCCCGTTTATTTCCAATTCGAACAGATAAAATTGCCACCGTGCGACGTCCGTTCACGTCACTTCGATACCGCCAATCCGGCTGCGAGCTACGACGAAGGTGAGTACAAAGTTATCTTTCTTTTTTCCGGCCGTCCTCCTCGGTTTGTTCTTTGGTTTTACTGTTTTATGGGTGTGCCCCAGTTTGTCGATTCTCTCTTTTCTTGTTGTCGTGAATATTCAGAATGGCGAAGAAAAGAATCCATACGCCCATTTACAAGTAACCACTGTTTGTGCTGTCTGCCAGAAAAATTCAAGTATTCAGTACCATTCTCTTTTTGGGTTCTGTTTTCTTTCTCATTCCAGTGAGAATCCAGCGTTTTCTTGGAGAATTTTACTCTATTCAACTGTTTTCTCGTGCTTTGTTTCTTCTATCTGGAAATTTAGCTGTTGTTTCAATTAATTAGATTCGGAAGGAATTTGATATGAATGGATTCAGAATTGTGTGCCAATTATAGTTCATATACATGTAGTGATGAGAATTTTGGCATTGGGTTAGGGTTTTTGAAAGTTAGATTTTTGTCGGTTGCCTTTGGGTCTGTGGTGTATGCTTGTAGGCTGTATGAATTCAAGTTATTTGTATCCTGTTTCTGTTTGGTTAATCACTCCCCTCCAACACACTTTTGTATTCTGAATCATCTGCCTTTTGTTGTGGTTCATAATTCATATCTGTCAAGTTATGGAATGGAAGGCAAGCTAGTTTTGAGGACTCCATCTGACTAGTTACATGTTTGTTTGACAATTGTTGAAATGTATTGCAGGCGTTGTCCTTTTCTTGATAATTGGCTATTTTCCATCTGAACATCTCTTGAATTGAGATGTACTTCAGTCTGCACACTTCATGAGTTTGTGTTATTTCTGTACTCCATTGTTTATGATTGCCTTTGTATGTTGGTAAAATTTTATTTTTACTTTTAGTCCAATCTTGTGAACATTAAATATCTTGCTGATGTAGTTGGTTTTGCTCTTAGTCTGCTATTTAATATTTTGCTCTTTCCAAAATCACCAACTTCAAATGTCAAGTCAAGTGTCAGGCCTGGGCTGATGTGAATTCTTCTTTTTCTTTATACACATACGTGCAAGCCTTTCATGTTATTTTGTTGTCATGCTACTAGTTGCTATTACTATGAATGACTGGCAAGAGAGTTTGGTTCCGTGCCTTGGCTTGAATGTTCGTCCATGCCAGTGCATGGATATATCATATATGTATGTGATAACTTCACGATTCTTTGCTCTTTCAGATGCGTGGTGTCATTTTTAAAGTAATTTTATTCTAACCATCATTAGTGTGCACAGCTTATCAAATTATTGAGAACCTTCATCATACGAATATGTAAAGAAACAATAATCATGAGTTGGCGTTATGGTAAATAGGGAATATGACATTGATAAAGGGCTAAAAAAGGTCATGGATTCAATTCATGGTGGCTAACTACCTATCTAGGATTTAATATCCTACAAATTTTGTTGACGTCCAAATGTTATAGGTTCAAGTGGATAGTCTCACGAGATTAATCGAGGCATGTGTAAGTTGGCATGGACATTCATGGTTCTTAAAAGATTGAAACATGTAAAAAAACCTTTGTTTTGAGAATCTATCGTCTTTGCTATAGGCTAATCTTTTACCTCATCTGTTATTTCCTAATTGTTTGCAGAGACTTTGCTTTGATATGAGTTTTGTGTTTTCAGCTTCTTTGGCTAACCCTACATGGGAAACAAACCCGTGAAGCAACCACAGGAAGAAGTTTTCTTGAAGATAGTACCTCCTTTGGACCAAACATATGTTAGATGGCTAGCTCGTGATCTCGAGAGGATTCATGGCTTCACCCTGAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAGCCATGTCTTACAAACTCGAAAGTGTATCATTGTGGACATCTATCCTCTATCTTCTTATAATGTTAGTTCAAAGACTCTCCAACTGTCATTTGTAGGTAATCCTGTTTATGTCAACCAGTTGTCCATTAGCAATTTCTGTTAACAGGAATTGTGGAATAAAATTCTATGGTGTTGCCAAACCATCACCTCAATTCGATATTTGTAATGTCATTATTACTTCACTTTAGTTGAAATTTACCATTTTCTTTTTTT

mRNA sequence

GGTCTTTTCGCGTTTCCCGTTTATTTCCAATTCGAACAGATAAAATTGCCACCGTGCGACGTCCGTTCACGTCACTTCGATACCGCCAATCCGGCTGCGAGCTACGACGAAGCTTCTTTGGCTAACCCTACATGGGAAACAAACCCGTGAAGCAACCACAGGAAGAAGTTTTCTTGAAGATAGTACCTCCTTTGGACCAAACATATGTTAGATGGCTAGCTCGTGATCTCGAGAGGATTCATGGCTTCACCCTGAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAGCCATGTCTTACAAACTCGAAAGTGTATCATTGTGGACATCTATCCTCTATCTTCTTATAATGTTAGTTCAAAGACTCTCCAACTGTCATTTGTAGGTAATCCTGTTTATGTCAACCAGTTGTCCATTAGCAATTTCTGTTAACAGGAATTGTGGAATAAAATTCTATGGTGTTGCCAAACCATCACCTCAATTCGATATTTGTAATGTCATTATTACTTCACTTTAGTTGAAATTTACCATTTTCTTTTTTT

Coding sequence (CDS)

ATGGGAAACAAACCCGTGAAGCAACCACAGGAAGAAGTTTTCTTGAAGATAGTACCTCCTTTGGACCAAACATATGTTAGATGGCTAGCTCGTGATCTCGAGAGGATTCATGGCTTCACCCTGAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAG

Protein sequence

MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLARLLK*

Homology

[Close]

BLAST of MELO3C014515 vs. TrEMBL
Match: D7TCP5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01120 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-32
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1   MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
           MGNKPVK+ +EE+FLKIVPPLD+ YVRWLARDLERIHGFT +NPRAVKPPDHYIE+MRLN
Sbjct: 105 MGNKPVKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLN 164

Query: 61  GWLDVSLDDPDLARLLK 78
           GWLDV+LDDPDLA L K
Sbjct: 165 GWLDVNLDDPDLAHLFK 181

[Close]

BLAST of MELO3C014515 vs. TrEMBL
Match: A0A061GZN3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.2e-31
Identity = 67/78 (85.90%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MGNKPVKQPQ-EEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRL 60
          MGNKPVKQ Q EE+ LKIVPPLDQ YVRWLARD+ERIHGFT RNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 78
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of MELO3C014515 vs. TrEMBL
Match: A0A0V0GKC5_SOLCH (Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-31
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 1


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGN+P K  ++EV LKIVPPLDQ YVRWLARDLERIHGFT RNPRAV+PPDHYIE+MRL 
Sbjct: 1  MGNRPAKPERDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMRLQ 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]

BLAST of MELO3C014515 vs. TrEMBL
Match: M1BQF4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019630 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-31
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 1


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGN+P K  ++EV LKIVPPLDQ YVRWLARDLERIHGFT RNPRAV+PPDHYIE+MRL 
Sbjct: 1  MGNRPAKPERDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMRLQ 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]

BLAST of MELO3C014515 vs. TrEMBL
Match: A0A061GNT1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038446 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.2e-31
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 1   MGNKPVKQPQ-EEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRL 60
           MGNKPVKQ Q EE+ LKIVPPLDQ YVRWLARD+ERIHGFT RNPRAVKPPDHYIE+MRL
Sbjct: 67  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 126

Query: 61  NGWLDVSLDDPDLARL 76
           NGWLDV LDDPDLA L
Sbjct: 127 NGWLDVKLDDPDLAHL 142

[Close]

BLAST of MELO3C014515 vs. TAIR10
Match: AT5G22210.1 (AT5G22210.1 unknown protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-24
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 1  MGNKP--VKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLR-NPRAVKPPDHYIEFM 60
          MGNK   VK+ +EE+ LKIVPPLD+ ++RWLARDL+R+HGF  + N RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNG LDV LDDPDLA L K
Sbjct: 61 RLNGSLDVDLDDPDLAHLFK 80

[Close]

BLAST of MELO3C014515 vs. NCBI nr
Match: gi|659097382|ref|XP_008449595.1| (PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 7.6e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]

BLAST of MELO3C014515 vs. NCBI nr
Match: gi|225464838|ref|XP_002271152.1| (PREDICTED: uncharacterized protein LOC100263775 isoform X2 [Vitis vinifera])

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-32
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGNKPVK+ +EE+FLKIVPPLD+ YVRWLARDLERIHGFT +NPRAVKPPDHYIE+MRLN
Sbjct: 1  MGNKPVKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDV+LDDPDLA L K
Sbjct: 61 GWLDVNLDDPDLAHLFK 77

[Close]

BLAST of MELO3C014515 vs. NCBI nr
Match: gi|731394464|ref|XP_010651848.1| (PREDICTED: uncharacterized protein LOC100263775 isoform X1 [Vitis vinifera])

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-32
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGNKPVK+ +EE+FLKIVPPLD+ YVRWLARDLERIHGFT +NPRAVKPPDHYIE+MRLN
Sbjct: 14 MGNKPVKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLN 73

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDV+LDDPDLA L K
Sbjct: 74 GWLDVNLDDPDLAHLFK 90

[Close]

BLAST of MELO3C014515 vs. NCBI nr
Match: gi|296084859|emb|CBI28268.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-32
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 1   MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
           MGNKPVK+ +EE+FLKIVPPLD+ YVRWLARDLERIHGFT +NPRAVKPPDHYIE+MRLN
Sbjct: 105 MGNKPVKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLN 164

Query: 61  GWLDVSLDDPDLARLLK 78
           GWLDV+LDDPDLA L K
Sbjct: 165 GWLDVNLDDPDLAHLFK 181

[Close]

BLAST of MELO3C014515 vs. NCBI nr
Match: gi|590586469|ref|XP_007015714.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 142.5 bits (358), Expect = 3.1e-31
Identity = 67/78 (85.90%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MGNKPVKQPQ-EEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRL 60
          MGNKPVKQ Q EE+ LKIVPPLDQ YVRWLARD+ERIHGFT RNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 78
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

The following BLAST results are available for this feature:

BLAST of MELO3C014515 vs. TrEMBL


Match Name	E-value	Identity	Description
D7TCP5_VITVI	3.3e-32	84.42	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01120 PE=4 SV=...	[more]
A0A061GZN3_THECC	2.2e-31	85.90	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041290 PE=4 SV=1	[more]
A0A0V0GKC5_SOLCH	2.8e-31	84.42	Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Sol...	[more]
M1BQF4_SOLTU	2.8e-31	84.42	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019630 PE=4 SV=1	[more]
A0A061GNT1_THECC	8.2e-31	86.84	Uncharacterized protein OS=Theobroma cacao GN=TCM_038446 PE=4 SV=1	[more]

BLAST of MELO3C014515 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22210.1	1.0e-24	67.50	unknown protein	[more]

BLAST of MELO3C014515 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097382\|ref\|XP_008449595.1\|	7.6e-38	100.00	PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo]	[more]
gi\|225464838\|ref\|XP_002271152.1\|	4.8e-32	84.42	PREDICTED: uncharacterized protein LOC100263775 isoform X2 [Vitis vinifera]	[more]
gi\|731394464\|ref\|XP_010651848.1\|	4.8e-32	84.42	PREDICTED: uncharacterized protein LOC100263775 isoform X1 [Vitis vinifera]	[more]
gi\|296084859\|emb\|CBI28268.3\|	4.8e-32	84.42	unnamed protein product [Vitis vinifera]	[more]
gi\|590586469\|ref\|XP_007015714.1\|	3.1e-31	85.90	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0051301	cell division
biological_process	GO:0010020	chloroplast fission
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0032153	cell division site
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU49806	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014515T1	MELO3C014515T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU49806	MU49806	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C014515	Csa6G425830	Cucumber (Chinese Long) v2	cumeB491
MELO3C014515	Cla008623	Watermelon (97103) v1	mewmB419
MELO3C014515	ClCG02G022390	Watermelon (Charleston Gray)	mewcgB376
MELO3C014515	Bhi10G000141	Wax gourd	mewgoB484
MELO3C014515	CSPI06G23380	Wild cucumber (PI 183967)	cpimeB493
MELO3C014515	Cucsa.185860	Cucumber (Gy14) v1	cgymeB333
MELO3C014515	CmaCh20G001520	Cucurbita maxima (Rimu)	cmameB521
MELO3C014515	CmoCh20G001670	Cucurbita moschata (Rifu)	cmomeB509
MELO3C014515	Lsi10G011410	Bottle gourd (USVL1VR-Ls)	lsimeB072
MELO3C014515	Cp4.1LG16g08330	Cucurbita pepo (Zucchini)	cpemeB278
MELO3C014515	CsGy6G022630	Cucumber (Gy14) v2	cgybmeB432
MELO3C014515	Carg18414	Silver-seed gourd	carmeB0423
MELO3C014515	CsaV3_6G038520	Cucumber (Chinese Long) v3	cucmeB503

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014515	Silver-seed gourd	carmeB0252
MELO3C014515	Silver-seed gourd	carmeB0910
MELO3C014515	Cucumber (Chinese Long) v3	cucmeB234
MELO3C014515	Watermelon (97103) v2	mewmbB367
MELO3C014515	Watermelon (97103) v2	mewmbB377
MELO3C014515	Melon (DHL92) v3.5.1	memeB135
MELO3C014515	Cucumber (Gy14) v1	cgymeB414
MELO3C014515	Cucurbita maxima (Rimu)	cmameB572
MELO3C014515	Cucurbita maxima (Rimu)	cmameB761
MELO3C014515	Cucurbita moschata (Rifu)	cmomeB224
MELO3C014515	Cucurbita moschata (Rifu)	cmomeB561
MELO3C014515	Cucurbita moschata (Rifu)	cmomeB754
MELO3C014515	Wild cucumber (PI 183967)	cpimeB228
MELO3C014515	Cucumber (Chinese Long) v2	cumeB234
MELO3C014515	Watermelon (Charleston Gray)	mewcgB365
MELO3C014515	Watermelon (97103) v1	mewmB398
MELO3C014515	Cucurbita pepo (Zucchini)	cpemeB581
MELO3C014515	Cucurbita pepo (Zucchini)	cpemeB696
MELO3C014515	Cucurbita pepo (Zucchini)	cpemeB806
MELO3C014515	Bottle gourd (USVL1VR-Ls)	lsimeB264
MELO3C014515	Cucumber (Gy14) v2	cgybmeB197