Cucsa.185860 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.185860
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B
Location	scaffold01274 : 1258215 .. 1258424 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGGGATGAAATTTTCGTGAAGGTAGCACCTCCTTTGGACCAAGCATTTGTTAGATGGCTAGCTCGTGATCTCGAAAGGATTCATGGCTTCCCCCCGAGAAATCCCCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGTATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAG

mRNA sequence

CAAAGGGATGAAATTTTCGTGAAGGTAGCACCTCCTTTGGACCAAGCATTTGTTAGATGGCTAGCTCGTGATCTCGAAAGGATTCATGGCTTCCCCCCGAGAAATCCCCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGTATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAG

Coding sequence (CDS)

CAAAGGGATGAAATTTTCGTGAAGGTAGCACCTCCTTTGGACCAAGCATTTGTTAGATGGCTAGCTCGTGATCTCGAAAGGATTCATGGCTTCCCCCCGAGAAATCCCCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGTATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAG

Protein sequence

QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLDDPDLARLLK*

Homology

[Close]

BLAST of Cucsa.185860 vs. TrEMBL
Match: A0A0A0KJX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425830 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 60
          QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD
Sbjct: 8  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 67

Query: 61 DPDLARLLK 70
          DPDLARLLK
Sbjct: 68 DPDLARLLK 76

[Close]

BLAST of Cucsa.185860 vs. TrEMBL
Match: M1BQF4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019630 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-28
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 60
          +RDE+ +K+ PPLDQA+VRWLARDLERIHGF PRNPRAV+PPDHYIE+MRL GWLDVSLD
Sbjct: 9  ERDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMRLQGWLDVSLD 68

Query: 61 DPDLARLLK 70
          DPDLARLLK
Sbjct: 69 DPDLARLLK 77

[Close]

BLAST of Cucsa.185860 vs. TrEMBL
Match: A0A0V0GKC5_SOLCH (Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-28
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 60
          +RDE+ +K+ PPLDQA+VRWLARDLERIHGF PRNPRAV+PPDHYIE+MRL GWLDVSLD
Sbjct: 9  ERDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMRLQGWLDVSLD 68

Query: 61 DPDLARLLK 70
          DPDLARLLK
Sbjct: 69 DPDLARLLK 77

[Close]

BLAST of Cucsa.185860 vs. TrEMBL
Match: K4DA38_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.6e-28
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 60
          +RDE+ +K+ PPLDQA+VRWLARDLERIHGF PRNPRAV+PPDHYIE+MRL GWLDVSLD
Sbjct: 9  ERDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMRLQGWLDVSLD 68

Query: 61 DPDLARLLK 70
          DPDLA LLK
Sbjct: 69 DPDLAHLLK 77

[Close]

BLAST of Cucsa.185860 vs. TrEMBL
Match: A0A061GZN3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.4e-27
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 60
          QR+EI +K+ PPLDQA+VRWLARD+ERIHGF PRNPRAVKPPDHYIE+MRL GWLDV LD
Sbjct: 10 QREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRLNGWLDVDLD 69

Query: 61 DPDLARLLK 70
          DPDLA L K
Sbjct: 70 DPDLAHLFK 78

[Close]

BLAST of Cucsa.185860 vs. TAIR10
Match: AT5G22210.1 (AT5G22210.1 unknown protein)

HSP 1 Score: 102.8 bits (255), Expect = 8.6e-23
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPR-NPRAVKPPDHYIEFMRLYGWLDVSL 60
          +R+EI +K+ PPLD+ F+RWLARDL+R+HGF P+ N RA+ PPD YIEFMRL G LDV L
Sbjct: 11 EREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFMRLNGSLDVDL 70

Query: 61 DDPDLARLLK 70
          DDPDLA L K
Sbjct: 71 DDPDLAHLFK 80

[Close]

BLAST of Cucsa.185860 vs. NCBI nr
Match: gi|778716737|ref|XP_011657590.1| (PREDICTED: uncharacterized protein LOC101220037 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.0e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 60
          QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD
Sbjct: 8  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 67

Query: 61 DPDLARLLK 70
          DPDLARLLK
Sbjct: 68 DPDLARLLK 76

[Close]

BLAST of Cucsa.185860 vs. NCBI nr
Match: gi|565394422|ref|XP_006362857.1| (PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum])

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-28
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 60
          +RDE+ +K+ PPLDQA+VRWLARDLERIHGF PRNPRAV+PPDHYIE+MRL GWLDVSLD
Sbjct: 9  ERDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMRLQGWLDVSLD 68

Query: 61 DPDLARLLK 70
          DPDLARLLK
Sbjct: 69 DPDLARLLK 77

[Close]

BLAST of Cucsa.185860 vs. NCBI nr
Match: gi|998614185|ref|NP_001307274.1| (uncharacterized LOC101244341 [Solanum lycopersicum])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-27
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 60
          +RDE+ +K+ PPLDQA+VRWLARDLERIHGF PRNPRAV+PPDHYIE+MRL GWLDVSLD
Sbjct: 9  ERDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMRLQGWLDVSLD 68

Query: 61 DPDLARLLK 70
          DPDLA LLK
Sbjct: 69 DPDLAHLLK 77

[Close]

BLAST of Cucsa.185860 vs. NCBI nr
Match: gi|698435377|ref|XP_009800330.1| (PREDICTED: uncharacterized protein LOC104246254 [Nicotiana sylvestris])

HSP 1 Score: 128.6 bits (322), Expect = 4.1e-27
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 60
          +RDE+ +K+ PP+DQA+ RWLARDLERI+GF PRNPRAVKPPDHYIE+MRL GWLDVSLD
Sbjct: 9  ERDEVLLKIVPPIDQAYARWLARDLERIYGFTPRNPRAVKPPDHYIEYMRLNGWLDVSLD 68

Query: 61 DPDLARLLK 70
          DPDLARLLK
Sbjct: 69 DPDLARLLK 77

[Close]

BLAST of Cucsa.185860 vs. NCBI nr
Match: gi|590586469|ref|XP_007015714.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 127.5 bits (319), Expect = 9.2e-27
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 1  QRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIEFMRLYGWLDVSLD 60
          QR+EI +K+ PPLDQA+VRWLARD+ERIHGF PRNPRAVKPPDHYIE+MRL GWLDV LD
Sbjct: 10 QREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRLNGWLDVDLD 69

Query: 61 DPDLARLLK 70
          DPDLA L K
Sbjct: 70 DPDLAHLFK 78

The following BLAST results are available for this feature:

BLAST of Cucsa.185860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJX9_CUCSA	2.1e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425830 PE=4 SV=1	[more]
M1BQF4_SOLTU	2.0e-28	84.06	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019630 PE=4 SV=1	[more]
A0A0V0GKC5_SOLCH	2.0e-28	84.06	Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Sol...	[more]
K4DA38_SOLLC	7.6e-28	82.61	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A061GZN3_THECC	6.4e-27	81.16	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041290 PE=4 SV=1	[more]

BLAST of Cucsa.185860 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22210.1	8.6e-23	67.14	unknown protein	[more]

BLAST of Cucsa.185860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778716737\|ref\|XP_011657590.1\|	3.0e-33	100.00	PREDICTED: uncharacterized protein LOC101220037 [Cucumis sativus]	[more]
gi\|565394422\|ref\|XP_006362857.1\|	2.9e-28	84.06	PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum]	[more]
gi\|998614185\|ref\|NP_001307274.1\|	1.1e-27	82.61	uncharacterized LOC101244341 [Solanum lycopersicum]	[more]
gi\|698435377\|ref\|XP_009800330.1\|	4.1e-27	81.16	PREDICTED: uncharacterized protein LOC104246254 [Nicotiana sylvestris]	[more]
gi\|590586469\|ref\|XP_007015714.1\|	9.2e-27	81.16	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.185860.1	Cucsa.185860.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.185860	Cla008623	Watermelon (97103) v1	cgywmB355
Cucsa.185860	Csa6G425830	Cucumber (Chinese Long) v2	cgycuB282
Cucsa.185860	MELO3C014515	Melon (DHL92) v3.5.1	cgymeB333
Cucsa.185860	ClCG02G022390	Watermelon (Charleston Gray)	cgywcgB331
Cucsa.185860	CSPI06G23380	Wild cucumber (PI 183967)	cgycpiB292
Cucsa.185860	CmaCh20G001520	Cucurbita maxima (Rimu)	cgycmaB0530
Cucsa.185860	CmoCh20G001670	Cucurbita moschata (Rifu)	cgycmoB0532
Cucsa.185860	Lsi10G011410	Bottle gourd (USVL1VR-Ls)	cgylsiB307
Cucsa.185860	Cp4.1LG16g08330	Cucurbita pepo (Zucchini)	cgycpeB0508
Cucsa.185860	MELO3C014515.2	Melon (DHL92) v3.6.1	cgymedB328
Cucsa.185860	CsaV3_6G038520	Cucumber (Chinese Long) v3	cgycucB297
Cucsa.185860	Cla97C02G048480	Watermelon (97103) v2	cgywmbB332
Cucsa.185860	Bhi10G000141	Wax gourd	cgywgoB381
Cucsa.185860	Carg18414	Silver-seed gourd	carcgyB0480

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.185860	Cucumber (Gy14) v1	cgycgyB110
Cucsa.185860	Cucurbita maxima (Rimu)	cgycmaB0531
Cucsa.185860	Cucurbita maxima (Rimu)	cgycmaB0534
Cucsa.185860	Cucurbita moschata (Rifu)	cgycmoB0533
Cucsa.185860	Cucurbita moschata (Rifu)	cgycmoB0536
Cucsa.185860	Wild cucumber (PI 183967)	cgycpiB291
Cucsa.185860	Cucumber (Chinese Long) v2	cgycuB281
Cucsa.185860	Melon (DHL92) v3.5.1	cgymeB331
Cucsa.185860	Watermelon (Charleston Gray)	cgywcgB330
Cucsa.185860	Watermelon (97103) v1	cgywmB352
Cucsa.185860	Cucurbita pepo (Zucchini)	cgycpeB0513
Cucsa.185860	Cucurbita pepo (Zucchini)	cgycpeB0517
Cucsa.185860	Bottle gourd (USVL1VR-Ls)	cgylsiB311
Cucsa.185860	Melon (DHL92) v3.6.1	cgymedB326
Cucsa.185860	Silver-seed gourd	carcgyB0293
Cucsa.185860	Silver-seed gourd	carcgyB1041
Cucsa.185860	Cucumber (Chinese Long) v3	cgycucB296
Cucsa.185860	Watermelon (97103) v2	cgywmbB331