Cp4.1LG16g08330 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG16g08330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B
LocationCp4.1LG16 : 7913900 .. 7916203 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGGTGAGATACAACTATTTTTTTAATTTAGAAAAAGAAAAAGGAATAAAATGATATAAAGAAGAAGGGCGAAATTGTCTTTTCACTTGCGCTTGTCTTCCAATTCGACAGATAAAAATGCGCACCGTAGAATTGGCACCATGCGACGTCCATTCTCGTCACTTTGCACACCGCCAATCGTGCTACGGCTAAGGTGAGTACTGAATCTTCTTCCTTCCTCCTCGTGGTGGTTTTTCGTTGTTTTCTTTTAGGTGTACCACAGTTTCCAGATTCTTTGTTCTCTTTTCTTGCTGTCGAGAATATTCAAATGGCGAAGAAAAGAATCCATACGCCCATTTACAACTAACCACCGTCTGTGTTATCTGCAAGAAATATTCAAGTATCGAGTATCATTTACTTTATGCCTTCTCTTTTCTTTCTATTTCCAGTCAGAATCTAGCGCTTTCTTGGAGAATTTTACTCTAATTCAACTGTTTTCTCGTGCTTTGTTTCTTGTAGTTGGAAATCCAGTTTTTGGTTTGATTAATTAGATTTGAAAGGAATTTGATATGCATGGATTCATAATTTTGTGCCAATCATAGTTTATATGTAGCGATGAGATTGTATGGCATTGGATTAGGGCTTTAGGAAGTTCGATTGGTTGCAACATTGGGGAATTCGATTCTTCCTGGTTGGATTTGGGAGATGTTGTCATTTCGTTGGGTTTTCTATGCGAGGCTGTCTGAATTTAAGCTATTTGCATATTTGAAATCAGGGTTAGCCAGAGGGTGTTTGGTTACTCAATGCTCTGAATCTGCTTCTCTTGTGGTTCATATCTGTGAAGTCAGCCCAAGCTTATCGCTAGCAATATTGTCTGCTTTAGCCCTTATGTATCTCCCTTAGCCTCGCGGTTTTAAAACGCATATGTTAGGAAGAGGTTTCTACACCCTTCTAAGGAATGCTTCATTCCCCTCTCTAACCAATATGTGGTCTCACAATCCACCTCCTATGGGGGCCAACGTCCTCGCTATTACACCGCTTGATATCTGGCTCTGATACCATTTGTAAAGATCAAGCCCACCACTAGCAGATATTGTTCGCTTTGGCCCGTTACGTATAGCTGTCAGCCTCACGATTTTAAAATGCGTCTGTTAGGAAGAGGTTTTTACACCCTTATAAAGAATGTTTTGTTCCCCTCTCCGACCGATGTGAGACCTCACCTCTTGAGATCTTCAATGGCTAGTTACATGTTTGTTTGACAATTGTTGAAATGTAGTGTAGGCATCGTCCTTTTCTTGATAATTGGCTGTTTTTGATCGGACCATCTCTTGAATTGAGATGTTCTCGACTCTGCACCGTTCATGAGTTCGTTTCGTTTCTTTACTCCCTTGTTTATGATTGTCTTTGTATGTTATGTTAGCTTGATAGGTAAAATCTTTCTGATGCGGTTGGTTTTTCTGTATAATACTTTTCTCTTACAAAAATCACCGACAACTTCGAATATCAAGTGTTTTAGATCTGAGTTGCCCTGAATCCTTCTTTTTCTTTACACACAACTGTACAAGCCTTTCATGTTTGTTGTTAATGTTCATCTGTGCCAGCGTATTGGTATGTATCTGGAACTTCACACTTAATTGCTTGTTCAGATGCTTACCGTCAAATTTGAAGTTCTTTTGATCTAACCGTCATTAGTGTGCACAGCTTAATAAATTATGAAGAGCCTTTATCATATGAACATGTAAAAACCTTTGTTTTGAGAATTTAATTAGTCTCTTAGCTTCTTGGTTATTTCCTAACTGTCTTTGGTTTATGCCTTGAGATAAGTTTTTGGTTTTCAGCTTTTCTGGTAAGCCTACATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTACCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAACGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTCGCACGGTTACTCAAATAGCCTTCTCTTGCAACTTGAAAGTGTACCAATGTCAAGTTTTGTGTATCTTCTGCCATTTGCCATTTGAGGTAATTCTGTTTATATCAAACAGTTGCCGGTTAGCAATGTCTGATAACGAGGAATTATGGAATAAAAACTGTGTGGTAGCCCAACTTTCACATCAGACTGATGTTTGTAATGCCATACTTATCTCCATGGATGAACTTTCAAGATTTTACTGCACTTGA

mRNA sequence

ATGTATAGGGCGAAATTGTCTTTTCACTTGCGCTTGTCTTCCAATTCGACAGATAAAAATGCGCACCGTAGAATTGGCACCATGCGACGTCCATTCTCGTCACTTTGCACACCGCCAATCGTGCTACGGCTAAGGTGTACCACAGTTTCCAGATTCTTTGTTCTCTTTTCTTGCTGTCGAGAATATTCAAATGGCGAAGAAAAGAATCCATACGCCCATTTACAACTAACCACCGTCTGTGTTATCTGCAAGAAATATTCAACCTACATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTACCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAACGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTCGCACGTTGCCGGTTAGCAATGTCTGATAACGAGGAATTATGGAATAAAAACTGTGTGGTAGCCCAACTTTCACATCAGACTGATGTTTGTAATGCCATACTTATCTCCATGGATGAACTTTCAAGATTTTACTGCACTTGA

Coding sequence (CDS)

ATGTATAGGGCGAAATTGTCTTTTCACTTGCGCTTGTCTTCCAATTCGACAGATAAAAATGCGCACCGTAGAATTGGCACCATGCGACGTCCATTCTCGTCACTTTGCACACCGCCAATCGTGCTACGGCTAAGGTGTACCACAGTTTCCAGATTCTTTGTTCTCTTTTCTTGCTGTCGAGAATATTCAAATGGCGAAGAAAAGAATCCATACGCCCATTTACAACTAACCACCGTCTGTGTTATCTGCAAGAAATATTCAACCTACATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTACCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAACGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTCGCACGTTGCCGGTTAGCAATGTCTGATAACGAGGAATTATGGAATAAAAACTGTGTGGTAGCCCAACTTTCACATCAGACTGATGTTTGTAATGCCATACTTATCTCCATGGATGAACTTTCAAGATTTTACTGCACTTGA

Protein sequence

MYRAKLSFHLRLSSNSTDKNAHRRIGTMRRPFSSLCTPPIVLRLRCTTVSRFFVLFSCCREYSNGEEKNPYAHLQLTTVCVICKKYSTYMGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLARCRLAMSDNEELWNKNCVVAQLSHQTDVCNAILISMDELSRFYCT
BLAST of Cp4.1LG16g08330 vs. TrEMBL
Match: A0A061GNT1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038446 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-31
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 1

Query: 87  STYMGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEF 146
           S  MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+
Sbjct: 64  SLIMGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEY 123

Query: 147 MRLNGWLDVSLDDPDLA 164
           MRLNGWLDV LDDPDLA
Sbjct: 124 MRLNGWLDVKLDDPDLA 140

BLAST of Cp4.1LG16g08330 vs. TrEMBL
Match: A0A061GZN3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 1

Query: 90  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 149
           MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1   MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 150 NGWLDVSLDDPDLA 164
           NGWLDV LDDPDLA
Sbjct: 61  NGWLDVDLDDPDLA 74

BLAST of Cp4.1LG16g08330 vs. TrEMBL
Match: A0A0D2QFR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124000 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-30
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 90  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 149
           MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 29  MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 88

Query: 150 NGWLDVSLDDPDLA 164
           NGWLDV LDDPDLA
Sbjct: 89  NGWLDVDLDDPDLA 102

BLAST of Cp4.1LG16g08330 vs. TrEMBL
Match: A0A0D2PQF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124000 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-30
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 90  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 149
           MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 1   MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 60

Query: 150 NGWLDVSLDDPDLA 164
           NGWLDV LDDPDLA
Sbjct: 61  NGWLDVDLDDPDLA 74

BLAST of Cp4.1LG16g08330 vs. TrEMBL
Match: M1BQF4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019630 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.7e-30
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1

Query: 90  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 149
           MGN+PAK    RDE +LKIVPPLDQAY+RWLARDLERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1   MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 150 LNGWLDVSLDDPDLAR 165
           L GWLDVSLDDPDLAR
Sbjct: 61  LQGWLDVSLDDPDLAR 74

BLAST of Cp4.1LG16g08330 vs. TAIR10
Match: AT5G22210.1 (AT5G22210.1 unknown protein)

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-24
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1

Query: 90  MGNKPAKQSGGRDEM-LKIVPPLDQAYIRWLARDLERIHGFTPRN-PRAVKPPDHYIEFM 149
           MGNK       R+E+ LKIVPPLD+ ++RWLARDL+R+HGF P+N  RA+ PPD YIEFM
Sbjct: 1   MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 150 RLNGWLDVSLDDPDLA 164
           RLNG LDV LDDPDLA
Sbjct: 61  RLNGSLDVDLDDPDLA 76

BLAST of Cp4.1LG16g08330 vs. NCBI nr
Match: gi|590579864|ref|XP_007013906.1| (Uncharacterized protein TCM_038446 [Theobroma cacao])

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 1

Query: 87  STYMGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEF 146
           S  MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+
Sbjct: 64  SLIMGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEY 123

Query: 147 MRLNGWLDVSLDDPDLA 164
           MRLNGWLDV LDDPDLA
Sbjct: 124 MRLNGWLDVKLDDPDLA 140

BLAST of Cp4.1LG16g08330 vs. NCBI nr
Match: gi|590586469|ref|XP_007015714.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 144.1 bits (362), Expect = 2.8e-31
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 1

Query: 90  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 149
           MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1   MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 150 NGWLDVSLDDPDLA 164
           NGWLDV LDDPDLA
Sbjct: 61  NGWLDVDLDDPDLA 74

BLAST of Cp4.1LG16g08330 vs. NCBI nr
Match: gi|823123745|ref|XP_012477222.1| (PREDICTED: uncharacterized protein LOC105792914 isoform X1 [Gossypium raimondii])

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-30
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 90  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 149
           MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 1   MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 60

Query: 150 NGWLDVSLDDPDLA 164
           NGWLDV LDDPDLA
Sbjct: 61  NGWLDVDLDDPDLA 74

BLAST of Cp4.1LG16g08330 vs. NCBI nr
Match: gi|823123747|ref|XP_012477229.1| (PREDICTED: uncharacterized protein LOC105792914 isoform X2 [Gossypium raimondii])

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-30
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 90  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 149
           MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 29  MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 88

Query: 150 NGWLDVSLDDPDLA 164
           NGWLDV LDDPDLA
Sbjct: 89  NGWLDVDLDDPDLA 102

BLAST of Cp4.1LG16g08330 vs. NCBI nr
Match: gi|565394422|ref|XP_006362857.1| (PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum])

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-30
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1

Query: 90  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 149
           MGN+PAK    RDE +LKIVPPLDQAY+RWLARDLERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1   MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 150 LNGWLDVSLDDPDLAR 165
           L GWLDVSLDDPDLAR
Sbjct: 61  LQGWLDVSLDDPDLAR 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A061GNT1_THECC1.2e-3181.82Uncharacterized protein OS=Theobroma cacao GN=TCM_038446 PE=4 SV=1[more]
A0A061GZN3_THECC2.0e-3183.78Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041290 PE=4 SV=1[more]
A0A0D2QFR0_GOSRA1.3e-3081.08Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124000 PE=4 SV=1[more]
A0A0D2PQF0_GOSRA1.3e-3081.08Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124000 PE=4 SV=1[more]
M1BQF4_SOLTU1.7e-3085.53Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019630 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G22210.14.7e-2467.11 unknown protein[more]
Match NameE-valueIdentityDescription
gi|590579864|ref|XP_007013906.1|1.7e-3181.82Uncharacterized protein TCM_038446 [Theobroma cacao][more]
gi|590586469|ref|XP_007015714.1|2.8e-3183.78Uncharacterized protein isoform 1 [Theobroma cacao][more]
gi|823123745|ref|XP_012477222.1|1.8e-3081.08PREDICTED: uncharacterized protein LOC105792914 isoform X1 [Gossypium raimondii][more]
gi|823123747|ref|XP_012477229.1|1.8e-3081.08PREDICTED: uncharacterized protein LOC105792914 isoform X2 [Gossypium raimondii][more]
gi|565394422|ref|XP_006362857.1|2.4e-3085.53PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0051301 cell division
biological_process GO:0010020 chloroplast fission
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0032153 cell division site
cellular_component GO:0009507 chloroplast
molecular_function GO:0003924 GTPase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g08330.1Cp4.1LG16g08330.1mRNA


The following gene(s) are paralogous to this gene:

None