Carg18414 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18414
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B
Location	Cucurbita_argyrosperma_scaffold_161 : 128631 .. 128867 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTTGCACGGTTACTCAAATAG

mRNA sequence

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTTGCACGGTTACTCAAATAG

Coding sequence (CDS)

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTTGCACGGTTACTCAAATAG

Protein sequence

MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLARLLK

Homology

[Close]

BLAST of Carg18414 vs. NCBI nr
Match: XP_022943341.1 (uncharacterized protein LOC111448136 [Cucurbita moschata] >XP_022943342.1 uncharacterized protein LOC111448136 [Cucurbita moschata] >XP_023511908.1 uncharacterized protein LOC111776780 [Cucurbita pepo subsp. pepo] >XP_023511909.1 uncharacterized protein LOC111776780 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL
Sbjct: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDVSLDDPDLARLLK
Sbjct: 61 NGWLDVSLDDPDLARLLK 78

[Close]

BLAST of Carg18414 vs. NCBI nr
Match: XP_022986677.1 (uncharacterized protein LOC111484357 [Cucurbita maxima] >XP_022986678.1 uncharacterized protein LOC111484357 [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 3.5e-39
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARD+ERIHGFTPRNPRAVKPPDHYIEFMRL
Sbjct: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDVSLDDPDLARLLK
Sbjct: 61 NGWLDVSLDDPDLARLLK 78

[Close]

BLAST of Carg18414 vs. NCBI nr
Match: XP_021278844.1 (uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao] >EOY33334.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao])

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-32
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of Carg18414 vs. NCBI nr
Match: XP_022152955.1 (uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncharacterized protein LOC111020571 [Momordica charantia])

HSP 1 Score: 146.0 bits (367), Expect = 5.4e-32
Identity = 68/80 (85.00%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MGNKPAKQSGGRDE--MLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGNKP KQ   + E   LKIVPPLDQAY+RWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 79
          RLNGWLDVSLDDPDLA L K
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]

BLAST of Carg18414 vs. NCBI nr
Match: XP_006362857.1 (PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum] >XP_015158697.1 PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum])

HSP 1 Score: 145.6 bits (366), Expect = 7.1e-32
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 60
          MGN+PAK    RDE +LKIVPPLDQAY+RWLARDLERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1  MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 61 LNGWLDVSLDDPDLARLLK 79
          L GWLDVSLDDPDLARLLK
Sbjct: 61 LQGWLDVSLDDPDLARLLK 77

[Close]

BLAST of Carg18414 vs. TAIR10
Match: AT5G22210.1 (unknown protein)

HSP 1 Score: 111.3 bits (277), Expect = 2.7e-25
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1  MGNKPAKQSGGRDEM-LKIVPPLDQAYIRWLARDLERIHGFTPR-NPRAVKPPDHYIEFM 60
          MGNK       R+E+ LKIVPPLD+ ++RWLARDL+R+HGF P+ N RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 79
          RLNG LDV LDDPDLA L K
Sbjct: 61 RLNGSLDVDLDDPDLAHLFK 80

[Close]

BLAST of Carg18414 vs. TrEMBL
Match: tr|A0A061GZN3|A0A061GZN3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-32
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of Carg18414 vs. TrEMBL
Match: tr|M1BQF4|M1BQF4_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102593640 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.7e-32
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 60
          MGN+PAK    RDE +LKIVPPLDQAY+RWLARDLERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1  MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 61 LNGWLDVSLDDPDLARLLK 79
          L GWLDVSLDDPDLARLLK
Sbjct: 61 LQGWLDVSLDDPDLARLLK 77

[Close]

BLAST of Carg18414 vs. TrEMBL
Match: tr|A0A0V0GKC5|A0A0V0GKC5_SOLCH (Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.7e-32
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 60
          MGN+PAK    RDE +LKIVPPLDQAY+RWLARDLERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1  MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 61 LNGWLDVSLDDPDLARLLK 79
          L GWLDVSLDDPDLARLLK
Sbjct: 61 LQGWLDVSLDDPDLARLLK 77

[Close]

BLAST of Carg18414 vs. TrEMBL
Match: tr|A0A061GNT1|A0A061GNT1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038446 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.0e-32
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1   MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
           MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 67  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 126

Query: 61  NGWLDVSLDDPDLARL 77
           NGWLDV LDDPDLA L
Sbjct: 127 NGWLDVKLDDPDLAHL 142

[Close]

BLAST of Carg18414 vs. TrEMBL
Match: tr|A0A0D2PQF0|A0A0D2PQF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G124000 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 1  MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

The following BLAST results are available for this feature:

BLAST of Carg18414 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943341.1	1.6e-39	100.00	uncharacterized protein LOC111448136 [Cucurbita moschata] >XP_022943342.1 unchar...	[more]
XP_022986677.1	3.5e-39	98.72	uncharacterized protein LOC111484357 [Cucurbita maxima] >XP_022986678.1 uncharac...	[more]
XP_021278844.1	3.2e-32	82.05	uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacte...	[more]
XP_022152955.1	5.4e-32	85.00	uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncha...	[more]
XP_006362857.1	7.1e-32	86.08	PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum] >XP_01515869...	[more]

BLAST of Carg18414 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22210.1	2.7e-25	66.25	unknown protein	[more]

BLAST of Carg18414 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18414 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061GZN3\|A0A061GZN3_THECC	2.1e-32	82.05	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 ...	[more]
tr\|M1BQF4\|M1BQF4_SOLTU	4.7e-32	86.08	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102593640 PE=4 SV=1	[more]
tr\|A0A0V0GKC5\|A0A0V0GKC5_SOLCH	4.7e-32	86.08	Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Sol...	[more]
tr\|A0A061GNT1\|A0A061GNT1_THECC	8.0e-32	82.89	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038446 PE=4 SV=1	[more]
tr\|A0A0D2PQF0\|A0A0D2PQF0_GOSRA	1.4e-31	79.49	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G124000 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18414-RA	Carg18414-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18414	Cla008623	Watermelon (97103) v1	carwmB0413
Carg18414	Csa6G425830	Cucumber (Chinese Long) v2	carcuB0445
Carg18414	MELO3C014515	Melon (DHL92) v3.5.1	carmeB0423
Carg18414	ClCG02G022390	Watermelon (Charleston Gray)	carwcgB0409
Carg18414	CSPI06G23380	Wild cucumber (PI 183967)	carcpiB0450
Carg18414	Cucsa.185860	Cucumber (Gy14) v1	carcgyB0480
Carg18414	CmaCh20G001520	Cucurbita maxima (Rimu)	carcmaB0575
Carg18414	CmoCh20G001670	Cucurbita moschata (Rifu)	carcmoB0559
Carg18414	Lsi10G011410	Bottle gourd (USVL1VR-Ls)	carlsiB375
Carg18414	Cp4.1LG16g08330	Cucurbita pepo (Zucchini)	carcpeB0579
Carg18414	CsGy6G022630	Cucumber (Gy14) v2	carcgybB0421
Carg18414	MELO3C014515.2	Melon (DHL92) v3.6.1	carmedB0426
Carg18414	CsaV3_6G038520	Cucumber (Chinese Long) v3	carcucB0446
Carg18414	Bhi10G000141	Wax gourd	carwgoB0501

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18414	Silver-seed gourd	carcarB289
Carg18414	Silver-seed gourd	carcarB433
Carg18414	Cucumber (Gy14) v1	carcgyB0481
Carg18414	Cucurbita maxima (Rimu)	carcmaB0576
Carg18414	Cucurbita maxima (Rimu)	carcmaB0578
Carg18414	Cucurbita moschata (Rifu)	carcmoB0557
Carg18414	Cucurbita moschata (Rifu)	carcmoB0560
Carg18414	Cucurbita moschata (Rifu)	carcmoB0562
Carg18414	Cucurbita pepo (Zucchini)	carcpeB0580
Carg18414	Cucurbita pepo (Zucchini)	carcpeB0583
Carg18414	Cucurbita pepo (Zucchini)	carcpeB0584
Carg18414	Wild cucumber (PI 183967)	carcpiB0449
Carg18414	Cucumber (Chinese Long) v2	carcuB0444
Carg18414	Cucumber (Chinese Long) v3	carcucB0445
Carg18414	Bottle gourd (USVL1VR-Ls)	carlsiB378
Carg18414	Melon (DHL92) v3.5.1	carmeB0422
Carg18414	Melon (DHL92) v3.6.1	carmedB0425
Carg18414	Watermelon (Charleston Gray)	carwcgB0407
Carg18414	Watermelon (97103) v1	carwmB0411
Carg18414	Watermelon (97103) v2	carwmbB0437
Carg18414	Watermelon (97103) v2	carwmbB0439