CmaCh20G001520 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G001520
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B
Location	Cma_Chr20 : 750809 .. 751045 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATGTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAACGGATGGTTGGACGTGAGTTTAGATGATCCTGATCTCGCACGGTTACTCAAATAG

mRNA sequence

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATGTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAACGGATGGTTGGACGTGAGTTTAGATGATCCTGATCTCGCACGGTTACTCAAATAG

Coding sequence (CDS)

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATGTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAACGGATGGTTGGACGTGAGTTTAGATGATCCTGATCTCGCACGGTTACTCAAATAG

Protein sequence

MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLARLLK

Homology

[Close]

BLAST of CmaCh20G001520 vs. TrEMBL
Match: A0A061GZN3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.8e-33
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of CmaCh20G001520 vs. TrEMBL
Match: A0A061GNT1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038446 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-32
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 1   MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRL 60
           MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 67  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 126

Query: 61  NGWLDVSLDDPDLARL 77
           NGWLDV LDDPDLA L
Sbjct: 127 NGWLDVKLDDPDLAHL 142

[Close]

BLAST of CmaCh20G001520 vs. TrEMBL
Match: A0A0D2PQF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124000 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-32
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 1  MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of CmaCh20G001520 vs. TrEMBL
Match: M1BQF4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019630 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-32
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMR 60
          MGN+PAK    RDE +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1  MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 61 LNGWLDVSLDDPDLARLLK 79
          L GWLDVSLDDPDLARLLK
Sbjct: 61 LQGWLDVSLDDPDLARLLK 77

[Close]

BLAST of CmaCh20G001520 vs. TrEMBL
Match: A0A0V0GKC5_SOLCH (Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-32
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMR 60
          MGN+PAK    RDE +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1  MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 61 LNGWLDVSLDDPDLARLLK 79
          L GWLDVSLDDPDLARLLK
Sbjct: 61 LQGWLDVSLDDPDLARLLK 77

[Close]

BLAST of CmaCh20G001520 vs. TAIR10
Match: AT5G22210.1 (AT5G22210.1 unknown protein)

HSP 1 Score: 110.2 bits (274), Expect = 6.0e-25
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDEM-LKIVPPLDQAYIRWLARDVERIHGFTPRN-PRAVKPPDHYIEFM 60
          MGNK       R+E+ LKIVPPLD+ ++RWLARD++R+HGF P+N  RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 79
          RLNG LDV LDDPDLA L K
Sbjct: 61 RLNGSLDVDLDDPDLAHLFK 80

[Close]

BLAST of CmaCh20G001520 vs. NCBI nr
Match: gi|590586469|ref|XP_007015714.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of CmaCh20G001520 vs. NCBI nr
Match: gi|590579864|ref|XP_007013906.1| (Uncharacterized protein TCM_038446 [Theobroma cacao])

HSP 1 Score: 145.2 bits (365), Expect = 4.8e-32
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 1   MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRL 60
           MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 67  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 126

Query: 61  NGWLDVSLDDPDLARL 77
           NGWLDV LDDPDLA L
Sbjct: 127 NGWLDVKLDDPDLAHL 142

[Close]

BLAST of CmaCh20G001520 vs. NCBI nr
Match: gi|823123745|ref|XP_012477222.1| (PREDICTED: uncharacterized protein LOC105792914 isoform X1 [Gossypium raimondii])

HSP 1 Score: 144.4 bits (363), Expect = 8.1e-32
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 1  MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of CmaCh20G001520 vs. NCBI nr
Match: gi|565394422|ref|XP_006362857.1| (PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum])

HSP 1 Score: 144.4 bits (363), Expect = 8.1e-32
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMR 60
          MGN+PAK    RDE +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1  MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 61 LNGWLDVSLDDPDLARLLK 79
          L GWLDVSLDDPDLARLLK
Sbjct: 61 LQGWLDVSLDDPDLARLLK 77

[Close]

BLAST of CmaCh20G001520 vs. NCBI nr
Match: gi|823123747|ref|XP_012477229.1| (PREDICTED: uncharacterized protein LOC105792914 isoform X2 [Gossypium raimondii])

HSP 1 Score: 144.4 bits (363), Expect = 8.1e-32
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1   MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDVERIHGFTPRNPRAVKPPDHYIEFMRL 60
           MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 29  MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 88

Query: 61  NGWLDVSLDDPDLARLLK 79
           NGWLDV LDDPDLA L K
Sbjct: 89  NGWLDVDLDDPDLAHLFK 106

The following BLAST results are available for this feature:

BLAST of CmaCh20G001520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G001520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061GZN3_THECC	8.8e-33	82.05	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041290 PE=4 SV=1	[more]
A0A061GNT1_THECC	3.3e-32	82.89	Uncharacterized protein OS=Theobroma cacao GN=TCM_038446 PE=4 SV=1	[more]
A0A0D2PQF0_GOSRA	5.7e-32	79.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124000 PE=4 SV=1	[more]
M1BQF4_SOLTU	5.7e-32	84.81	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019630 PE=4 SV=1	[more]
A0A0V0GKC5_SOLCH	5.7e-32	84.81	Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Sol...	[more]

BLAST of CmaCh20G001520 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22210.1	6.0e-25	65.00	unknown protein	[more]

BLAST of CmaCh20G001520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590586469\|ref\|XP_007015714.1\|	1.3e-32	82.05	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|590579864\|ref\|XP_007013906.1\|	4.8e-32	82.89	Uncharacterized protein TCM_038446 [Theobroma cacao]	[more]
gi\|823123745\|ref\|XP_012477222.1\|	8.1e-32	79.49	PREDICTED: uncharacterized protein LOC105792914 isoform X1 [Gossypium raimondii]	[more]
gi\|565394422\|ref\|XP_006362857.1\|	8.1e-32	84.81	PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum]	[more]
gi\|823123747\|ref\|XP_012477229.1\|	8.1e-32	79.49	PREDICTED: uncharacterized protein LOC105792914 isoform X2 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0051301	cell division
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0032153	cell division site
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G001520.1	CmaCh20G001520.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G001520	Cucsa.185860	Cucumber (Gy14) v1	cgycmaB0530
CmaCh20G001520	Cla008623	Watermelon (97103) v1	cmawmB531
CmaCh20G001520	Csa6G425830	Cucumber (Chinese Long) v2	cmacuB562
CmaCh20G001520	MELO3C014515	Melon (DHL92) v3.5.1	cmameB521
CmaCh20G001520	ClCG02G022390	Watermelon (Charleston Gray)	cmawcgB489
CmaCh20G001520	CSPI06G23380	Wild cucumber (PI 183967)	cmacpiB569
CmaCh20G001520	CmoCh20G001670	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G001520	Lsi10G011410	Bottle gourd (USVL1VR-Ls)	cmalsiB500
CmaCh20G001520	Cp4.1LG16g08330	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G001520	MELO3C014515.2	Melon (DHL92) v3.6.1	cmamedB598
CmaCh20G001520	CsaV3_6G038520	Cucumber (Chinese Long) v3	cmacucB0676
CmaCh20G001520	Bhi10G000141	Wax gourd	cmawgoB0693
CmaCh20G001520	CsGy6G022630	Cucumber (Gy14) v2	cgybcmaB799
CmaCh20G001520	Carg18414	Silver-seed gourd	carcmaB0575

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G001520	Watermelon (97103) v2	cmawmbB577
CmaCh20G001520	Cucurbita maxima (Rimu)	cmacmaB262
CmaCh20G001520	Cucurbita maxima (Rimu)	cmacmaB470
CmaCh20G001520	Cucurbita maxima (Rimu)	cmacmaB491
CmaCh20G001520	Cucumber (Gy14) v1	cgycmaB0678
CmaCh20G001520	Cucurbita moschata (Rifu)	cmacmoB555
CmaCh20G001520	Cucurbita moschata (Rifu)	cmacmoB570
CmaCh20G001520	Wild cucumber (PI 183967)	cmacpiB553
CmaCh20G001520	Cucumber (Chinese Long) v2	cmacuB548
CmaCh20G001520	Melon (DHL92) v3.5.1	cmameB519
CmaCh20G001520	Watermelon (Charleston Gray)	cmawcgB475
CmaCh20G001520	Watermelon (97103) v1	cmawmB511
CmaCh20G001520	Cucurbita pepo (Zucchini)	cmacpeB572
CmaCh20G001520	Cucurbita pepo (Zucchini)	cmacpeB586
CmaCh20G001520	Cucurbita pepo (Zucchini)	cmacpeB592
CmaCh20G001520	Cucumber (Gy14) v2	cgybcmaB119
CmaCh20G001520	Silver-seed gourd	carcmaB0345
CmaCh20G001520	Silver-seed gourd	carcmaB1267
CmaCh20G001520	Cucumber (Chinese Long) v3	cmacucB0658