CmoCh20G001670 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G001670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B
Location	Cmo_Chr20 : 849366 .. 849602 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCTGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAACGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTCGCACGGTTACTGAAATAG

mRNA sequence

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCTGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAACGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTCGCACGGTTACTGAAATAG

Coding sequence (CDS)

ATGGGAAACAAACCCGCGAAGCAATCAGGAGGAAGGGATGAAATGTTGAAGATAGTGCCTCCTTTGGACCAAGCATATATTAGGTGGCTCGCACGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAACCCTCGTGCTGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAACGGATGGTTGGACGTGAGTTTAGACGATCCTGATCTCGCACGGTTACTGAAATAG

Homology

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BLAST of CmoCh20G001670 vs. TrEMBL
Match: A0A061GZN3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of CmoCh20G001670 vs. TrEMBL
Match: A0A0V0GKC5_SOLCH (Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-32
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 60
          MGN+PAK    RDE +LKIVPPLDQAY+RWLARDLERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1  MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 61 LNGWLDVSLDDPDLARLLK 79
          L GWLDVSLDDPDLARLLK
Sbjct: 61 LQGWLDVSLDDPDLARLLK 77

[Close]

BLAST of CmoCh20G001670 vs. TrEMBL
Match: M1BQF4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019630 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-32
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 60
          MGN+PAK    RDE +LKIVPPLDQAY+RWLARDLERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1  MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 61 LNGWLDVSLDDPDLARLLK 79
          L GWLDVSLDDPDLARLLK
Sbjct: 61 LQGWLDVSLDDPDLARLLK 77

[Close]

BLAST of CmoCh20G001670 vs. TrEMBL
Match: A0A061GNT1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038446 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-32
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 1   MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
           MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 67  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 126

Query: 61  NGWLDVSLDDPDLARL 77
           NGWLDV LDDPDLA L
Sbjct: 127 NGWLDVKLDDPDLAHL 142

[Close]

BLAST of CmoCh20G001670 vs. TrEMBL
Match: A0A0D2PQF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124000 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.4e-32
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 1  MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of CmoCh20G001670 vs. TAIR10
Match: AT5G22210.1 (AT5G22210.1 unknown protein)

HSP 1 Score: 111.3 bits (277), Expect = 2.7e-25
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDEM-LKIVPPLDQAYIRWLARDLERIHGFTPRN-PRAVKPPDHYIEFM 60
          MGNK       R+E+ LKIVPPLD+ ++RWLARDL+R+HGF P+N  RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 79
          RLNG LDV LDDPDLA L K
Sbjct: 61 RLNGSLDVDLDDPDLAHLFK 80

[Close]

BLAST of CmoCh20G001670 vs. NCBI nr
Match: gi|590586469|ref|XP_007015714.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 1  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of CmoCh20G001670 vs. NCBI nr
Match: gi|565394422|ref|XP_006362857.1| (PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum])

HSP 1 Score: 145.6 bits (366), Expect = 3.7e-32
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDE-MLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 60
          MGN+PAK    RDE +LKIVPPLDQAY+RWLARDLERIHGFTPRNPRAV+PPDHYIE+MR
Sbjct: 1  MGNRPAKPE--RDEVLLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVRPPDHYIEYMR 60

Query: 61 LNGWLDVSLDDPDLARLLK 79
          L GWLDVSLDDPDLARLLK
Sbjct: 61 LQGWLDVSLDDPDLARLLK 77

[Close]

BLAST of CmoCh20G001670 vs. NCBI nr
Match: gi|590579864|ref|XP_007013906.1| (Uncharacterized protein TCM_038446 [Theobroma cacao])

HSP 1 Score: 144.8 bits (364), Expect = 6.2e-32
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 1   MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
           MGNKP KQ    + +LKIVPPLDQAY+RWLARD+ERIHGFTPRNPRAVKPPDHYIE+MRL
Sbjct: 67  MGNKPVKQEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRL 126

Query: 61  NGWLDVSLDDPDLARL 77
           NGWLDV LDDPDLA L
Sbjct: 127 NGWLDVKLDDPDLAHL 142

[Close]

BLAST of CmoCh20G001670 vs. NCBI nr
Match: gi|823123745|ref|XP_012477222.1| (PREDICTED: uncharacterized protein LOC105792914 isoform X1 [Gossypium raimondii])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
          MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 1  MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 60

Query: 61 NGWLDVSLDDPDLARLLK 79
          NGWLDV LDDPDLA L K
Sbjct: 61 NGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of CmoCh20G001670 vs. NCBI nr
Match: gi|823123747|ref|XP_012477229.1| (PREDICTED: uncharacterized protein LOC105792914 isoform X2 [Gossypium raimondii])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1   MGNKPAKQSGGRDEMLKIVPPLDQAYIRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRL 60
           MGNKPAKQ    + +LKIVPPLDQAY+RWLARD+ERIHGF+PRNPRAVKPP+HYIE+M+L
Sbjct: 29  MGNKPAKQERREEVLLKIVPPLDQAYVRWLARDIERIHGFSPRNPRAVKPPEHYIEYMQL 88

Query: 61  NGWLDVSLDDPDLARLLK 79
           NGWLDV LDDPDLA L K
Sbjct: 89  NGWLDVDLDDPDLAHLFK 106

The following BLAST results are available for this feature:

BLAST of CmoCh20G001670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G001670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061GZN3_THECC	1.1e-32	82.05	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041290 PE=4 SV=1	[more]
A0A0V0GKC5_SOLCH	2.5e-32	86.08	Putative aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B-like OS=Sol...	[more]
M1BQF4_SOLTU	2.5e-32	86.08	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019630 PE=4 SV=1	[more]
A0A061GNT1_THECC	4.3e-32	82.89	Uncharacterized protein OS=Theobroma cacao GN=TCM_038446 PE=4 SV=1	[more]
A0A0D2PQF0_GOSRA	7.4e-32	79.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G124000 PE=4 SV=1	[more]

BLAST of CmoCh20G001670 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22210.1	2.7e-25	66.25	unknown protein	[more]

BLAST of CmoCh20G001670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590586469\|ref\|XP_007015714.1\|	1.6e-32	82.05	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|565394422\|ref\|XP_006362857.1\|	3.7e-32	86.08	PREDICTED: uncharacterized protein LOC102593640 [Solanum tuberosum]	[more]
gi\|590579864\|ref\|XP_007013906.1\|	6.2e-32	82.89	Uncharacterized protein TCM_038446 [Theobroma cacao]	[more]
gi\|823123745\|ref\|XP_012477222.1\|	1.1e-31	79.49	PREDICTED: uncharacterized protein LOC105792914 isoform X1 [Gossypium raimondii]	[more]
gi\|823123747\|ref\|XP_012477229.1\|	1.1e-31	79.49	PREDICTED: uncharacterized protein LOC105792914 isoform X2 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0051301	cell division
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0032153	cell division site
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G001670.1	CmoCh20G001670.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G001670	Cucsa.185860	Cucumber (Gy14) v1	cgycmoB0532
CmoCh20G001670	CmaCh20G001520	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G001670	Cla008623	Watermelon (97103) v1	cmowmB520
CmoCh20G001670	Csa6G425830	Cucumber (Chinese Long) v2	cmocuB552
CmoCh20G001670	MELO3C014515	Melon (DHL92) v3.5.1	cmomeB509
CmoCh20G001670	ClCG02G022390	Watermelon (Charleston Gray)	cmowcgB490
CmoCh20G001670	CSPI06G23380	Wild cucumber (PI 183967)	cmocpiB557
CmoCh20G001670	Lsi10G011410	Bottle gourd (USVL1VR-Ls)	cmolsiB484
CmoCh20G001670	Cp4.1LG16g08330	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G001670	MELO3C014515.2	Melon (DHL92) v3.6.1	cmomedB585
CmoCh20G001670	CsaV3_6G038520	Cucumber (Chinese Long) v3	cmocucB0659
CmoCh20G001670	Bhi10G000141	Wax gourd	cmowgoB0687
CmoCh20G001670	CsGy6G022630	Cucumber (Gy14) v2	cgybcmoB777
CmoCh20G001670	Carg18414	Silver-seed gourd	carcmoB0559

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G001670	Watermelon (Charleston Gray)	cmowcgB473
CmoCh20G001670	Cucurbita pepo (Zucchini)	cmocpeB523
CmoCh20G001670	Cucurbita pepo (Zucchini)	cmocpeB535
CmoCh20G001670	Cucurbita pepo (Zucchini)	cmocpeB540
CmoCh20G001670	Silver-seed gourd	carcmoB1236
CmoCh20G001670	Watermelon (97103) v2	cmowmbB557
CmoCh20G001670	Cucurbita moschata (Rifu)	cmocmoB210
CmoCh20G001670	Cucurbita moschata (Rifu)	cmocmoB405
CmoCh20G001670	Cucurbita moschata (Rifu)	cmocmoB423
CmoCh20G001670	Cucurbita maxima (Rimu)	cmacmoB607