MELO3C012251.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C012251.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionClavata3/ESR (CLE) gene family member
Locationchr10 : 1701312 .. 1701980 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGGACCATTTGAGTCTGCTATTCCCTCATCACGTGGGCCATTGTCGACTCTCTTTCTCTCTTCTCTCTGAGTCCCATTATAGCCGTCTTTTCCTTTGCTCTTATATCTCTAACCTAAGCCTCAAATCCATTTCAACACACTAACAATTTCTTTCCTCTCTATTTTTTCCAAACTCAATTTACTATGACATTCATACATGCCGACCACCCACATACACCACGGATTTGAGTGTTCTTGAAATATTTCAAGTTTCAAATTCTTTTTTTATTTTTTTTATTTTTAATTGTGGGTTTTTCTTTCCGGCCGCCGGCAAGCCACCATGTTCAACAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCTATACTAATTTTGATCCTCTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCGCCGCCGTCCCCACCGCATACGACGGATAAATCACTCCCTGGTGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAACCTTCGATCGTCACCATCACCGCCATGATGAAGGATTTGAAGACAGCAAACGGAAAATCCCCAGTTGTCCAGATCCTCTTCATAATTAG

mRNA sequence

AGTGGACCATTTGAGTCTGCTATTCCCTCATCACGTGGGCCATTGTCGACTCTCTTTCTCTCTTCTCTCTGAGTCCCATTATAGCCGTCTTTTCCTTTGCTCTTATATCTCTAACCTAAGCCTCAAATCCATTTCAACACACTAACAATTTCTTTCCTCTCTATTTTTTCCAAACTCAATTTACTATGACATTCATACATGCCGACCACCCACATACACCACGGATTTGAGTGTTCTTGAAATATTTCAAGTTTCAAATTCTTTTTTTATTTTTTTTATTTTTAATTGTGGGTTTTTCTTTCCGGCCGCCGGCAAGCCACCATGTTCAACAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCTATACTAATTTTGATCCTCTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCGCCGCCGTCCCCACCGCATACGACGGATAAATCACTCCCTGGTGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAACCTTCGATCGTCACCATCACCGCCATGATGAAGGATTTGAAGACAGCAAACGGAAAATCCCCAGTTGTCCAGATCCTCTTCATAATTAG

Coding sequence (CDS)

ATGTTCAACAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCTATACTAATTTTGATCCTCTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCGCCGCCGTCCCCACCGCATACGACGGATAAATCACTCCCTGGTGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAACCTTCGATCGTCACCATCACCGCCATGATGAAGGATTTGAAGACAGCAAACGGAAAATCCCCAGTTGTCCAGATCCTCTTCATAATTAG

Protein sequence

MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPHTTDKSLPGEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN
Homology
[Close]
BLAST of MELO3C012251.2 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_5G609690 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 64  KSLPGEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           KSL GEEKDNAKN+LLQKYFNGR FDR  HRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 58  KSLSGEEKDNAKNDLLQKYFNGRAFDR--HRHDEGFEDSKRKIPSCPDPLHN 107

[Close]
BLAST of MELO3C012251.2 vs. NCBI nr
Match: EOY00178.1 (Clavata3/esr-related 43, putative [Theobroma cacao])

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-06
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 68  GEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           G + +  K +L QKYFNGR+F    ++ D GFE+SKR++PSCPDPLHN
Sbjct: 54  GMKDNKGKGDLFQKYFNGRSFS--FNKTDRGFEESKRRVPSCPDPLHN 99

[Close]
BLAST of MELO3C012251.2 vs. NCBI nr
Match: POE61314.1 (clavata3/esr (cle)-related protein 27 [Quercus suber])

HSP 1 Score: 60.5 bits (145), Expect = 4.4e-06
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 68  GEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           G     +K EL  KYF+GRTF   +  HD GFE+SKRK+PSCPDPLHN
Sbjct: 46  GRIDKKSKVELFHKYFSGRTF-ALNRTHDNGFEESKRKVPSCPDPLHN 92

[Close]
BLAST of MELO3C012251.2 vs. NCBI nr
Match: KHN14843.1 (CLAVATA3/ESR (CLE)-related protein 27 [Glycine soja])

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-05
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 68  GEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           G E +  K +LL K+FNGRTF  ++    +GF++SKR++PSCPDPLHN
Sbjct: 53  GVEDEKVKEDLLHKHFNGRTFGLNNGT-QKGFDESKRRVPSCPDPLHN 99

[Close]
BLAST of MELO3C012251.2 vs. NCBI nr
Match: ADW77284.1 (CLE30 protein [Glycine max] >KRH35953.1 hypothetical protein GLYMA_10G274200 [Glycine max] >KRH35954.1 hypothetical protein GLYMA_10G274200 [Glycine max])

HSP 1 Score: 57.0 bits (136), Expect = 4.9e-05
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 70  EKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           + + +K +L +KYF GRT  R  +   +GF+DSKR++PSCPDPLHN
Sbjct: 51  DNNKSKEDLFKKYFGGRTHLRPSNTTQKGFDDSKRRVPSCPDPLHN 96

[Close]
BLAST of MELO3C012251.2 vs. TAIR10
Match: AT1G25425.1 (CLAVATA3/ESR-RELATED 43)

HSP 1 Score: 41.6 bits (96), Expect = 3.9e-04
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0 

Query: 63  DKSLPGEEKDNAKNE----LLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           D++     K+  KNE    L Q+YF GR+F  ++   +  FEDS R+IPS PD LHN
Sbjct: 42  DRNTLMTSKNKNKNEDVQRLFQRYFKGRSFGLNN--TNSRFEDSNRRIPSSPDRLHN 96

[Close]
BLAST of MELO3C012251.2 vs. TrEMBL
Match: tr|A0A0A0KR66|A0A0A0KR66_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.4e-18
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 64  KSLPGEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           KSL GEEKDNAKN+LLQKYFNGR FDR  HRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 58  KSLSGEEKDNAKNDLLQKYFNGRAFDR--HRHDEGFEDSKRKIPSCPDPLHN 107

[Close]
BLAST of MELO3C012251.2 vs. TrEMBL
Match: tr|A0A2N9G6I6|A0A2N9G6I6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22693 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 70  EKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           +K  +K EL  KYF+GRTF  ++   D GF++SKR++PSCPDPLHN
Sbjct: 47  DKKISKEELFHKYFSGRTFSLNNKTDDNGFDESKRRVPSCPDPLHN 92

[Close]
BLAST of MELO3C012251.2 vs. TrEMBL
Match: tr|A0A061E6F8|A0A061E6F8_THECC (Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 68  GEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           G + +  K +L QKYFNGR+F    ++ D GFE+SKR++PSCPDPLHN
Sbjct: 54  GMKDNKGKGDLFQKYFNGRSFS--FNKTDRGFEESKRRVPSCPDPLHN 99

[Close]
BLAST of MELO3C012251.2 vs. TrEMBL
Match: tr|A0A2P4HYI3|A0A2P4HYI3_QUESU (Clavata3/esr (Cle)-related protein 27 OS=Quercus suber OX=58331 GN=CFP56_51616 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 68  GEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           G     +K EL  KYF+GRTF   +  HD GFE+SKRK+PSCPDPLHN
Sbjct: 46  GRIDKKSKVELFHKYFSGRTF-ALNRTHDNGFEESKRKVPSCPDPLHN 92

[Close]
BLAST of MELO3C012251.2 vs. TrEMBL
Match: tr|A0A0B2Q4C9|A0A0B2Q4C9_GLYSO (CLAVATA3/ESR (CLE)-related protein 27 OS=Glycine soja OX=3848 GN=glysoja_049334 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 68  GEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 116
           G E +  K +LL K+FNGRTF  ++    +GF++SKR++PSCPDPLHN
Sbjct: 53  GVEDEKVKEDLLHKHFNGRTFGLNNGT-QKGFDESKRRVPSCPDPLHN 99

The following BLAST results are available for this feature:
BLAST of MELO3C012251.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52083.11.1e-1790.38hypothetical protein Csa_5G609690 [Cucumis sativus][more]
EOY00178.13.4e-0656.25Clavata3/esr-related 43, putative [Theobroma cacao][more]
POE61314.14.4e-0660.42clavata3/esr (cle)-related protein 27 [Quercus suber][more]
KHN14843.12.9e-0554.17CLAVATA3/ESR (CLE)-related protein 27 [Glycine soja][more]
ADW77284.14.9e-0552.17CLE30 protein [Glycine max] >KRH35953.1 hypothetical protein GLYMA_10G274200 [Gl... [more]
BLAST of MELO3C012251.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G25425.13.9e-0443.86CLAVATA3/ESR-RELATED 43[more]
BLAST of MELO3C012251.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C012251.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KR66|A0A0A0KR66_CUCSA7.4e-1890.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1[more]
tr|A0A2N9G6I6|A0A2N9G6I6_FAGSY1.3e-0656.52Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22693 PE=4 SV=1[more]
tr|A0A061E6F8|A0A061E6F8_THECC2.2e-0656.25Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 ... [more]
tr|A0A2P4HYI3|A0A2P4HYI3_QUESU2.9e-0660.42Clavata3/esr (Cle)-related protein 27 OS=Quercus suber OX=58331 GN=CFP56_51616 P... [more]
tr|A0A0B2Q4C9|A0A0B2Q4C9_GLYSO1.9e-0554.17CLAVATA3/ESR (CLE)-related protein 27 OS=Glycine soja OX=3848 GN=glysoja_049334 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012251.2.1MELO3C012251.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..115
NoneNo IPR availablePANTHERPTHR37184FAMILY NOT NAMEDcoord: 9..115

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C012251.2Csa5G609690Cucumber (Chinese Long) v2cumedB359
MELO3C012251.2CSPI05G25300Wild cucumber (PI 183967)cpimedB363
MELO3C012251.2Cucsa.283550Cucumber (Gy14) v1cgymedB471
MELO3C012251.2CmaCh04G015070Cucurbita maxima (Rimu)cmamedB726
MELO3C012251.2Lsi04G002510Bottle gourd (USVL1VR-Ls)lsimedB297
MELO3C012251.2Cp4.1LG01g13730Cucurbita pepo (Zucchini)cpemedB423
MELO3C012251.2Cp4.1LG09g03100Cucurbita pepo (Zucchini)cpemedB028
MELO3C012251.2Cla020399Watermelon (97103) v1medwmB061
MELO3C012251.2ClCG05G022690Watermelon (Charleston Gray)medwcgB061
MELO3C012251.2Cla97C05G104560Watermelon (97103) v2medwmbB056
MELO3C012251.2Bhi07G001102Wax gourdmedwgoB071
MELO3C012251.2Carg01842Silver-seed gourdcarmedB0846
MELO3C012251.2Carg21593Silver-seed gourdcarmedB1022
MELO3C012251.2CsaV3_5G034340Cucumber (Chinese Long) v3cucmedB375
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012251.2Watermelon (Charleston Gray)medwcgB063
MELO3C012251.2Watermelon (97103) v1medwmB067
MELO3C012251.2Watermelon (97103) v1medwmB079
MELO3C012251.2Silver-seed gourdcarmedB0604
MELO3C012251.2Cucumber (Chinese Long) v3cucmedB004
MELO3C012251.2Cucumber (Chinese Long) v3cucmedB006
MELO3C012251.2Watermelon (97103) v2medwmbB054
MELO3C012251.2Watermelon (97103) v2medwmbB059
MELO3C012251.2Wax gourdmedwgoB059
MELO3C012251.2Wax gourdmedwgoB069
MELO3C012251.2Cucumber (Gy14) v2cgybmedB006
MELO3C012251.2Cucurbita moschata (Rifu)cmomedB195
MELO3C012251.2Cucumber (Gy14) v2cgybmedB318
MELO3C012251.2Cucurbita maxima (Rimu)cmamedB206
MELO3C012251.2Cucumber (Gy14) v1cgymedB353
MELO3C012251.2Cucurbita maxima (Rimu)cmamedB090
MELO3C012251.2Cucurbita maxima (Rimu)cmamedB301
MELO3C012251.2Cucurbita maxima (Rimu)cmamedB408
MELO3C012251.2Cucurbita maxima (Rimu)cmamedB733
MELO3C012251.2Cucurbita maxima (Rimu)cmamedB747
MELO3C012251.2Cucurbita moschata (Rifu)cmomedB082
MELO3C012251.2Cucurbita moschata (Rifu)cmomedB288
MELO3C012251.2Cucurbita moschata (Rifu)cmomedB395
MELO3C012251.2Cucurbita moschata (Rifu)cmomedB720
MELO3C012251.2Cucurbita moschata (Rifu)cmomedB728
MELO3C012251.2Cucurbita moschata (Rifu)cmomedB744
MELO3C012251.2Cucurbita pepo (Zucchini)cpemedB187
MELO3C012251.2Cucurbita pepo (Zucchini)cpemedB432
MELO3C012251.2Cucurbita pepo (Zucchini)cpemedB706
MELO3C012251.2Wild cucumber (PI 183967)cpimedB004
MELO3C012251.2Wild cucumber (PI 183967)cpimedB006
MELO3C012251.2Cucumber (Chinese Long) v2cumedB005
MELO3C012251.2Cucumber (Chinese Long) v2cumedB006
MELO3C012251.2Melon (DHL92) v3.6.1medmedB022
MELO3C012251.2Melon (DHL92) v3.6.1medmedB025
MELO3C012251.2Bottle gourd (USVL1VR-Ls)lsimedB177
MELO3C012251.2Bottle gourd (USVL1VR-Ls)lsimedB411