Cucsa.283550 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.283550
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 27
Locationscaffold02653 : 630560 .. 630969 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGGCAAAGCCACCATGTTTAACAGAAGAATCACCACTTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCTCCGCCGCCGCATCCAGCGGATAAATCACTGTCTGGTGAAGAAAAAGACAACGCCAAAAATGATCTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGTCACCGCCATGATGAAGGATTTGAAGACAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAGTAGGATTAATTATTCAATTTTACACTCTTTCCCGTCCAAAATACCCCCGTTTTTCTCTTCAATTTTTtCTTT

mRNA sequence

CCGGCAAAGCCACCATGTTTAACAGAAGAATCACCACTTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTtcctcctcctcctcctcctccGCCGCCGCATCCAGCGGATAAATCACTGTCTGGTGAAGAAAAAGACAACGCCAAAAATGATCTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGTCACCGCCATGATGAAGGATTTGAAGACAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAGTAGGATTAATTATTCAATTTTACACTCTTTCCCGTCCAAAATACCCCCGTTTTTCTCTTCAATTTTTTCTTT

Coding sequence (CDS)

ATGTTTAACAGAAGAATCACCACTTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCTCCGCCGCCGCATCCAGCGGATAAATCACTGTCTGGTGAAGAAAAAGACAACGCCAAAAATGATCTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGTCACCGCCATGATGAAGGATTTGAAGACAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG

Protein sequence

MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN*
Homology
[Close]
BLAST of Cucsa.283550 vs. TrEMBL
Match: A0A0A0KR66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 2.9e-58
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60
           MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]
BLAST of Cucsa.283550 vs. TrEMBL
Match: A0A061E6F8_THECC (Clavata3/esr-related 43, putative OS=Theobroma cacao GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 10  SSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAK 69
           SS     +  +++LI++  QIWVCC C+A A RI P                G + +  K
Sbjct: 7   SSRKLLYSSVVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTES-----QGMKDNKGK 66

Query: 70  NDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            DL QKYFNGR+F  ++ D GFE+SKR++PSCPDPLHN
Sbjct: 67  GDLFQKYFNGRSFSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]
BLAST of Cucsa.283550 vs. TrEMBL
Match: A0A067GNI3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046114mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-15
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 4   RRITTSSSSSSTSAFA-ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSG 63
           +RI  SSSSSS S  A +L++I+ V QIWVC  CQ  A RIF  P          K+   
Sbjct: 9   KRIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTPNEVEKQQMVTKN--- 68

Query: 64  EEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
             K   + DL++KYF G AF+  R ++G  D KR++PSCPDPLHN
Sbjct: 69  -NKSYKEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]
BLAST of Cucsa.283550 vs. TrEMBL
Match: F6HEW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03550 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-13
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1 

Query: 20  ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDN-------AKNDL 79
           +++LI+ +  IW+CC CQA A RIFP             +  GEEK         +  DL
Sbjct: 15  VVLLIISLLHIWLCCDCQAGAMRIFPG------------NGVGEEKGRHQMKARKSNEDL 74

Query: 80  LQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            +K+FNGRAF  +R  +GF++SKR++PSCPDPLHN
Sbjct: 75  FRKFFNGRAFAFNRTAKGFDESKRRVPSCPDPLHN 97

[Close]
BLAST of Cucsa.283550 vs. TrEMBL
Match: M5XRN8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013758mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 1 

Query: 20  ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDN-AKNDLLQKYFN 79
           ++IL++ V QIWVCC C+A A R+FP          A+ S + + K N ++  L  KYF 
Sbjct: 15  VVILVISVLQIWVCCDCKAGAIRVFPGHTNALSKGEAESSNTMQSKSNRSREALFHKYFG 74

Query: 80  G--RAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           G  RA   ++ ++G+EDSKR++PSCPD LHN
Sbjct: 75  GSVRASKFNKTEQGYEDSKRRVPSCPDQLHN 105

[Close]
BLAST of Cucsa.283550 vs. TAIR10
Match: AT3G25905.1 (AT3G25905.1 CLAVATA3/ESR-RELATED 27)

HSP 1 Score: 50.4 bits (119), Expect = 7.8e-07
Identity = 33/98 (33.67%), Postives = 51/98 (52.04%), Query Frame = 1 

Query: 12  SSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKND 71
           SS T+   ++IL+ ++  ++ C + +  A RIFP  P            SG+ ++    D
Sbjct: 9   SSLTTTLLMVILLSYMLHLF-CVYSRVGAIRIFPETPA-----------SGKRQEE---D 68

Query: 72  LLQKYFNGRAFDRHRH--DEGFEDSKRKIPSCPDPLHN 108
           L++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 69  LMKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

[Close]
BLAST of Cucsa.283550 vs. TAIR10
Match: AT1G25425.1 (AT1G25425.1 CLAVATA3/ESR-RELATED 43)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-06
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 1 

Query: 18  FAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKND----LL 77
           F++ +L++ + QIW+      R  R    P         D++     K+  KN+    L 
Sbjct: 10  FSVALLLISLFQIWLF-----REGR--QVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLF 69

Query: 78  QKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           Q+YF GR+F  +  +  FEDS R+IPS PD LHN
Sbjct: 70  QRYFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]
BLAST of Cucsa.283550 vs. NCBI nr
Match: gi|700196906|gb|KGN52083.1| (hypothetical protein Csa_5G609690 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 4.1e-58
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60
           MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]
BLAST of Cucsa.283550 vs. NCBI nr
Match: gi|659092326|ref|XP_008447013.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 7.0e-50
Identity = 101/115 (87.83%), Postives = 102/115 (88.70%), Query Frame = 1 

Query: 1   MFNRRITTS----SSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPP--PPH 60
           MFNRRI TS    SSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPP  PPH
Sbjct: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPH 60

Query: 61  PADKSLSGEEKDNAKNDLLQKYFNGRAFDR--HRHDEGFEDSKRKIPSCPDPLHN 108
             DKSL GEEKDNAKN+LLQKYFNGR FDR  HRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 61  TTDKSLPGEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 115

[Close]
BLAST of Cucsa.283550 vs. NCBI nr
Match: gi|590693483|ref|XP_007044346.1| (Clavata3/esr-related 43, putative [Theobroma cacao])

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-15
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 10  SSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAK 69
           SS     +  +++LI++  QIWVCC C+A A RI P                G + +  K
Sbjct: 7   SSRKLLYSSVVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTES-----QGMKDNKGK 66

Query: 70  NDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            DL QKYFNGR+F  ++ D GFE+SKR++PSCPDPLHN
Sbjct: 67  GDLFQKYFNGRSFSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]
BLAST of Cucsa.283550 vs. NCBI nr
Match: gi|641858275|gb|KDO76997.1| (hypothetical protein CISIN_1g046114mg [Citrus sinensis])

HSP 1 Score: 88.2 bits (217), Expect = 9.6e-15
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 4   RRITTSSSSSSTSAFA-ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSG 63
           +RI  SSSSSS S  A +L++I+ V QIWVC  CQ  A RIF  P          K+   
Sbjct: 9   KRIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTPNEVEKQQMVTKN--- 68

Query: 64  EEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
             K   + DL++KYF G AF+  R ++G  D KR++PSCPDPLHN
Sbjct: 69  -NKSYKEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]
BLAST of Cucsa.283550 vs. NCBI nr
Match: gi|225423983|ref|XP_002282631.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Vitis vinifera])

HSP 1 Score: 82.4 bits (202), Expect = 5.3e-13
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1 

Query: 20  ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDN-------AKNDL 79
           +++LI+ +  IW+CC CQA A RIFP             +  GEEK         +  DL
Sbjct: 15  VVLLIISLLHIWLCCDCQAGAMRIFPG------------NGVGEEKGRHQMKARKSNEDL 74

Query: 80  LQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            +K+FNGRAF  +R  +GF++SKR++PSCPDPLHN
Sbjct: 75  FRKFFNGRAFAFNRTAKGFDESKRRVPSCPDPLHN 97

The following BLAST results are available for this feature:
BLAST of Cucsa.283550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR66_CUCSA2.9e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609690 PE=4 SV=1[more]
A0A061E6F8_THECC1.8e-1544.90Clavata3/esr-related 43, putative OS=Theobroma cacao GN=TCM_009879 PE=4 SV=1[more]
A0A067GNI3_CITSI6.7e-1546.67Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046114mg PE=4 SV=1[more]
F6HEW7_VITVI3.7e-1344.21Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03550 PE=4 SV=... [more]
M5XRN8_PRUPE2.4e-1243.96Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013758mg PE=4 SV=1[more]
BLAST of Cucsa.283550 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G25905.17.8e-0733.67 CLAVATA3/ESR-RELATED 27[more]
AT1G25425.11.7e-0634.04 CLAVATA3/ESR-RELATED 43[more]
BLAST of Cucsa.283550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196906|gb|KGN52083.1|4.1e-58100.00hypothetical protein Csa_5G609690 [Cucumis sativus][more]
gi|659092326|ref|XP_008447013.1|7.0e-5087.83PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Cucumis melo][more]
gi|590693483|ref|XP_007044346.1|2.5e-1544.90Clavata3/esr-related 43, putative [Theobroma cacao][more]
gi|641858275|gb|KDO76997.1|9.6e-1546.67hypothetical protein CISIN_1g046114mg [Citrus sinensis][more]
gi|225423983|ref|XP_002282631.1|5.3e-1344.21PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.283550.1Cucsa.283550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37184FAMILY NOT NAMEDcoord: 17..107
score: 5.1
NoneNo IPR availablePANTHERPTHR37184:SF1CLAVATA3/ESR (CLE)-RELATED PROTEIN 27-RELATEDcoord: 17..107
score: 5.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.283550Cla020399Watermelon (97103) v1cgywmB524
Cucsa.283550Csa5G609690Cucumber (Chinese Long) v2cgycuB410
Cucsa.283550MELO3C012251Melon (DHL92) v3.5.1cgymeB474
Cucsa.283550ClCG05G022690Watermelon (Charleston Gray)cgywcgB498
Cucsa.283550CSPI05G25300Wild cucumber (PI 183967)cgycpiB432
Cucsa.283550CmaCh04G015070Cucurbita maxima (Rimu)cgycmaB0801
Cucsa.283550Lsi04G002510Bottle gourd (USVL1VR-Ls)cgylsiB465
Cucsa.283550Cp4.1LG01g13730Cucurbita pepo (Zucchini)cgycpeB0750
Cucsa.283550Cp4.1LG09g03100Cucurbita pepo (Zucchini)cgycpeB0745
Cucsa.283550MELO3C012251.2Melon (DHL92) v3.6.1cgymedB471
Cucsa.283550CsaV3_5G034340Cucumber (Chinese Long) v3cgycucB441
Cucsa.283550Cla97C05G104560Watermelon (97103) v2cgywmbB498
Cucsa.283550Bhi07G001102Wax gourdcgywgoB581
Cucsa.283550Carg01842Silver-seed gourdcarcgyB0968
Cucsa.283550Carg21593Silver-seed gourdcarcgyB1159
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.283550Watermelon (97103) v2cgywmbB497
Cucsa.283550Watermelon (97103) v2cgywmbB499
Cucsa.283550Wax gourdcgywgoB575
Cucsa.283550Wax gourdcgywgoB580
Cucsa.283550Cucumber (Gy14) v1cgycgyB114
Cucsa.283550Cucurbita maxima (Rimu)cgycmaB0790
Cucsa.283550Cucurbita maxima (Rimu)cgycmaB0796
Cucsa.283550Cucurbita maxima (Rimu)cgycmaB0797
Cucsa.283550Cucurbita maxima (Rimu)cgycmaB0803
Cucsa.283550Cucurbita maxima (Rimu)cgycmaB0807
Cucsa.283550Cucurbita moschata (Rifu)cgycmoB0788
Cucsa.283550Cucurbita moschata (Rifu)cgycmoB0789
Cucsa.283550Cucurbita moschata (Rifu)cgycmoB0793
Cucsa.283550Cucurbita moschata (Rifu)cgycmoB0795
Cucsa.283550Cucurbita moschata (Rifu)cgycmoB0800
Cucsa.283550Wild cucumber (PI 183967)cgycpiB426
Cucsa.283550Wild cucumber (PI 183967)cgycpiB428
Cucsa.283550Cucumber (Chinese Long) v2cgycuB405
Cucsa.283550Cucumber (Chinese Long) v2cgycuB406
Cucsa.283550Melon (DHL92) v3.5.1cgymeB476
Cucsa.283550Melon (DHL92) v3.5.1cgymeB478
Cucsa.283550Watermelon (Charleston Gray)cgywcgB499
Cucsa.283550Watermelon (97103) v1cgywmB529
Cucsa.283550Watermelon (97103) v1cgywmB530
Cucsa.283550Cucurbita pepo (Zucchini)cgycpeB0747
Cucsa.283550Cucurbita pepo (Zucchini)cgycpeB0753
Cucsa.283550Cucurbita pepo (Zucchini)cgycpeB0757
Cucsa.283550Cucurbita pepo (Zucchini)cgycpeB0763
Cucsa.283550Bottle gourd (USVL1VR-Ls)cgylsiB462
Cucsa.283550Bottle gourd (USVL1VR-Ls)cgylsiB466
Cucsa.283550Melon (DHL92) v3.6.1cgymedB473
Cucsa.283550Melon (DHL92) v3.6.1cgymedB475
Cucsa.283550Silver-seed gourdcarcgyB0676
Cucsa.283550Cucumber (Chinese Long) v3cgycucB434
Cucsa.283550Cucumber (Chinese Long) v3cgycucB436