Carg21593 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21593
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_118 : 387436 .. 390664 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTACCAGAAGAATCGCCGCTTCCTCTTCTTTTGCCATCCTAATTTTGATCCTCTGGGTGTCGCAGATTTGGGTTTTTTGTTGTTTCTCTCAAGCTAGAGCTTCAAGGATTTTCCCACCACCACCGCCGCCTCCGCCGCCGCTCCACACGACGGACAAAACAGACCACGCCAACCGCCGATATGAACTACTTCAAAAATACTTCAAGGACAGAGCCTTCCTCGATCCCCACCGCCATCATGAAGGATTCGTAGATAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAGTAGGATTAATTCATTTTTCCATCCAAAATACCCCCGTTTTTCTCTTTCTTTTCTGTTTTTTCTGCTCGTTCTCTGAGATTCAACGGAGAAAACCGGGGTTATTTTGGTTCTCCTCTTTGTTATATATGAAATCATAAAGTTTCTTCTTTTCAATTCATTCCACTTCAGAAAACAATGTGTAGTAGCAGCAGTAGTGGCGACTAGTGATTTCTTCTTCCATGTTCTTTTGTTCTATTGTCTTTGACTTGAATCAAAACACCAACTTTTTAACTGCAAAAAACCAGAGGCCAGAAGAGAATTAAACTGGTGTATAATATGTCCTTTCAGTGTCCAATCTGAATGATCTGTCAGTCATTACAGAAATATCCGTTTATCACTTCGGACTTGTCTCCTTATTGGGCCTACTGGGCCTTCATCACCAGGCCCAACCCTATAAAATCAGATGCCGTTGGTTGAGAGAGGAGAAATTTTGATATGGACAAGGGTTTACTGAAATTTTAAAAATGATTTTATTGTTCTCATCAAGTCATTTAAAAAATGACCAATTGTACTCTGGGTAACTTAATCATGAGCTGAAGTCTTTTTTTAATGGATTCATGAAAAAGAGGGAAGTGCTTGAAGGGGACAAATCTAAAGTTAAAATGAGTCATATAAATAGTAGGAAGAAGTAGAATGGTGGTTGGATTTTAGTGTTTGTTTGGTTTAGGAAAGGGAGATTTGGAAATCTCTGTGGTTGTTGGTTTGTGCCATAATTTATTTGTCATACATTGGAACACCCACCGATAAGAAAAAACAAACCTAGTAATGAGTACGAACCCTCTAGTTAAAAAAGTTGATGACCTAATAATAGGGAAGAATATGACCGAACCCCGCTGCTAGTAGTAGTAAATGGTTAGGTAACAAGGTTTACATTTTTTTCAATTTTAATTTAATTTTTATTATTTTGGTGGTTTTATTGGAAAATTAGGAGGAAGGAAAAAAAAAACAGAGAAATCGAGATATGAGAATACGGCGGGTATTGCGCGGCGAAGAAGTTAAGAAACCTGCAATTTATTTATGCACTTAGCGGCCTGCTTTCTTTGTCTGCTTGCAATTTGGATTTTGGAATAAAATTGACCATTTATCTCTCTTTTTCTAAATTAAATTCAAATTTCTTCATAAAACAAAGGAAAAAACCCATAGATTATTGAAAGTTGGTGAAAGAATTTATGGGTAAACAAAATCTGTGACAACAAATATTTATAGAGAAAAATTAGTAAGAAATTTGAAGCGAAAAAAATATAATAATTTCTTGTTAGGTGTTGAGAATTGTTGGGAGTGAGTCTCCTATTGACTAATTTATGGATTTAGGAATGATCATGGGTTTAAAAGTATAGGAATACATCTCTATTGGTATTAGGTCTATTGGGGAAGCCTTTATACTCAACGTGGATGAACAGTTAGGAATTGATTATTTTAATTATAAGTTGAAGATTTAAATTTTGAAATATATATATAATAGCTTTTATAAGCTGTCTTTTTATTTATGAGGTAGGATGGGTAGGTTTGTAAATTTAATATTTCTTTGAACTTTGAATATTAAATTTAATATTTCAATTTATATTCCAGCATATGGTAGGTGTGAGTATTATTACTATTATTCAAATTTTGATAGCTCATATATGGTTTTTTTTTTTTTCTGAAATTAAATTGAATAGCGTAATTACATATAAAGTTTGGGTACCCGGCCCATTGATAGAGTAACGGACCCTACCGGCCCATTAAGGTATATTGGGCCATCTCCCCGACCCATTGACAGACCGTGGATCGTACCACTAGCCCATTTATGAGCTAGCGGGCCCAAAATTGATGAAACGGGCTTTGCTACCAAAATTTATGGATCCATATAGACTATTTTTCAAATTTAAAACTAATACATAAAAAACGAGGACCATTTGAGAAAACCCTAGAGGGATTTCAATTTCAATATCAAGATTAATTACAATGGATATAGAAACGTATGGTCATGATTGATAGTAATAATAATATTTTGAAGACGATTAAAAACGCGCCTCGTCTCCAAAGCTTAGGTGGTTGAATTACATTCAGAAACATGTCACGATGATTCAGACTACCAATAAAAAGTTAAACAATATGAATATTGGACCATTAATCAATGTGAGGACAACTCTAAGACTAACCTAACGTGCAAACTTGGTCTCATCTTTACTTTTAAAAAGAAAGCCATAAAATAATTGAAGTATTAGAGTAGCTTACACATATATCATGCTAGTGTCGGTTGAGCCTACAAACGTTTCTTTTCCCTATTTTGTTGACTACTCGATCTTTTAAATGATGAAACGTAAGCTTATTGCCTTGAAATATATGTGCACATAAAAATCAACCCGAGCACTATTTTCTAAGTTTAGCTTTTTTAGTAAGTTTATGGTAATTAAACAAAAAACCTATTTGATTGAAACGATAAAAAGAAGCCCTAATGGAAGTGTACATTTAGGGCATGAAACAATATACTTAAATTAGCAAATCCAAAGGGGAAAAAAGGGATTAATTATGGGTAAGAGTATCAAGTTTAATGAGACAACAAAATCCCCACATTAATCAGAGAATCAAAGTCATAAGCCCAAAAAATGGAAACCACTTAATACTTAATTAACTTCACTCATCCTCTCCCCCACACAAACCATTTGCTCCTCAGCGGTTTCTATATTCCAATGGCTGCATTATTTATCTCTTCCAACGCTTTGACTTTTTAATTTATAATATATTTTATTACGTTAAACTCATTGTATTCGTGTCACCTATAGTCAGACAACTTATGCTCAAGCCTCTGATCCCGTTTGAGAAGAAGCTTTTAGAAAACTGTTTGAGAGCTCTAGAGAAAGGAGTCAAGCCTCGATTAAGGGGAGGTTGTTTGAGAGCTCCATAA

mRNA sequence

ATGTGTACCAGAAGAATCGCCGCTTCCTCTTCTTTTGCCATCCTAATTTTGATCCTCTGGGTGTCGCAGATTTGGGTTTTTTGTTGTTTCTCTCAAGCTAGAGCTTCAAGGATTTTCCCACCACCACCGCCGCCTCCGCCGCCGCTCCACACGACGGACAAAACAGACCACGCCAACCGCCGATATGAACTACTTCAAAAATACTTCAAGGACAGAGCCTTCCTCGATCCCCACCGCCATCATGAAGGATTCGTAGATATCAGACAACTTATGCTCAAGCCTCTGATCCCGTTTGAGAAGAAGCTTTTAGAAAACTGTTTGAGAGCTCTAGAGAAAGGAGTCAAGCCTCGATTAAGGGGAGGTTGTTTGAGAGCTCCATAA

Coding sequence (CDS)

ATGTGTACCAGAAGAATCGCCGCTTCCTCTTCTTTTGCCATCCTAATTTTGATCCTCTGGGTGTCGCAGATTTGGGTTTTTTGTTGTTTCTCTCAAGCTAGAGCTTCAAGGATTTTCCCACCACCACCGCCGCCTCCGCCGCCGCTCCACACGACGGACAAAACAGACCACGCCAACCGCCGATATGAACTACTTCAAAAATACTTCAAGGACAGAGCCTTCCTCGATCCCCACCGCCATCATGAAGGATTCGTAGATATCAGACAACTTATGCTCAAGCCTCTGATCCCGTTTGAGAAGAAGCTTTTAGAAAACTGTTTGAGAGCTCTAGAGAAAGGAGTCAAGCCTCGATTAAGGGGAGGTTGTTTGAGAGCTCCATAA

Protein sequence

MCTRRIAASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPLHTTDKTDHANRRYELLQKYFKDRAFLDPHRHHEGFVDIRQLMLKPLIPFEKKLLENCLRALEKGVKPRLRGGCLRAP

Homology

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BLAST of Carg21593 vs. NCBI nr
Match: XP_022150497.1 (uncharacterized protein LOC111018633 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-09
Identity = 49/93 (52.69%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1  MCTRRIAA----SSSFAILILILWVSQIWVFCCFSQARASRIFXXXXXXXXXXXTTDKTD 60
          MCTRRIAA    +SSFAILILILWVSQIWV CC  QARASRI            T D   
Sbjct: 1  MCTRRIAAVSSSASSFAILILILWVSQIWV-CCHCQARASRIL-------PPPLTGDAKH 60

Query: 61 HANRRYELLQKYFKDRAFLDPHRHHEGFVDIRQ 90
           A+ + EL+QKY + RA       HEGF D ++
Sbjct: 61 DASGKNELVQKYLRGRA----SDRHEGFEDSKR 81

The following BLAST results are available for this feature:

BLAST of Carg21593 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150497.1	2.1e-09	52.69	uncharacterized protein LOC111018633 [Momordica charantia]	[more]

BLAST of Carg21593 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg21593 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg21593 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21593-RA	Carg21593-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21593	Cla020399	Watermelon (97103) v1	carwmB1044
Carg21593	Csa5G609690	Cucumber (Chinese Long) v2	carcuB1057
Carg21593	MELO3C012251	Melon (DHL92) v3.5.1	carmeB1010
Carg21593	ClCG05G022690	Watermelon (Charleston Gray)	carwcgB1016
Carg21593	CSPI05G25300	Wild cucumber (PI 183967)	carcpiB1079
Carg21593	Cucsa.283550	Cucumber (Gy14) v1	carcgyB1159
Carg21593	CmaCh04G015070	Cucurbita maxima (Rimu)	carcmaB1443
Carg21593	Lsi04G002510	Bottle gourd (USVL1VR-Ls)	carlsiB953
Carg21593	Cp4.1LG01g13730	Cucurbita pepo (Zucchini)	carcpeB1452
Carg21593	Cp4.1LG09g03100	Cucurbita pepo (Zucchini)	carcpeB1448
Carg21593	MELO3C012251.2	Melon (DHL92) v3.6.1	carmedB1022
Carg21593	CsaV3_5G034340	Cucumber (Chinese Long) v3	carcucB1090
Carg21593	Cla97C05G104560	Watermelon (97103) v2	carwmbB1102
Carg21593	Bhi07G001102	Wax gourd	carwgoB1222

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21593	Carg01842	Silver-seed gourd	carcarB627

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21593	Cucumber (Gy14) v2	carcgybB1025
Carg21593	Cucumber (Gy14) v2	carcgybB1026
Carg21593	Cucumber (Gy14) v1	carcgyB1158
Carg21593	Cucurbita maxima (Rimu)	carcmaB1441
Carg21593	Cucurbita maxima (Rimu)	carcmaB1444
Carg21593	Cucurbita moschata (Rifu)	carcmoB1395
Carg21593	Cucurbita moschata (Rifu)	carcmoB1397
Carg21593	Cucurbita moschata (Rifu)	carcmoB1398
Carg21593	Wild cucumber (PI 183967)	carcpiB1078
Carg21593	Cucumber (Chinese Long) v2	carcuB1056
Carg21593	Cucumber (Chinese Long) v3	carcucB1089
Carg21593	Melon (DHL92) v3.5.1	carmeB1011
Carg21593	Melon (DHL92) v3.6.1	carmedB1023
Carg21593	Watermelon (Charleston Gray)	carwcgB1017
Carg21593	Watermelon (97103) v1	carwmB1045
Carg21593	Watermelon (97103) v2	carwmbB1103
Carg21593	Wax gourd	carwgoB1221
Carg21593	Silver-seed gourd	carcarB462