Cp4.1LG01g13730 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g13730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	CLAVATA3/ESR (CLE)-related protein 27
Location	Cp4.1LG01 : 8071318 .. 8071671 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGTTTTCTTCCCGCCGCCGGGCAGCCATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAAAGCTTCACGGATTTTTCCTCCGCCGCCGCCGTCGCACACGGCGGACAAAACACTCACTGTCGACCAAAAACACAACGCCAACGCCGAAAGCGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACACCGCCACGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

mRNA sequence

ATGTCGGCGTTTTCTTCCCGCCGCCGGGCAGCCATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAAAGCTTCACGGATTTTTCCTCCGCCGCCGCCGTCGCACACGGCGGACAAAACACTCACTGTCGACCAAAAACACAACGCCAACGCCGAAAGCGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACACCGCCACGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Coding sequence (CDS)

ATGTCGGCGTTTTCTTCCCGCCGCCGGGCAGCCATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAAAGCTTCACGGATTTTTCCTCCGCCGCCGCCGTCGCACACGGCGGACAAAACACTCACTGTCGACCAAAAACACAACGCCAACGCCGAAAGCGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACACCGCCACGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Protein sequence

MSAFSSRRRAAMCTRRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVDQKHNANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN

Homology

[Close]

BLAST of Cp4.1LG01g13730 vs. TrEMBL
Match: A0A0A0KR66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.9e-37
Identity = 80/109 (73.39%), Postives = 94/109 (86.24%), Query Frame = 1


Query: 12  MCTRRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPS---HTADKTL 71
           M  RRI TSSSSSS+S+FA+LI ILWVSQIWVC HCQA+ASRIFPPPPP    H ADK+L
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 72  TVDQKHNANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 118
           + ++K NA  +++LL+KYF G+AFDRHRHDEGFEDSKR+IPSCPDPLHN
Sbjct: 61  SGEEKDNA--KNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Cp4.1LG01g13730 vs. TrEMBL
Match: A0A067GNI3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046114mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 15  RRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVDQKH 74
           R + +SSSSS S   A+L+ I+ V QIWVC  CQ  A RIF  P   +  +K   V + +
Sbjct: 10  RIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTP---NEVEKQQMVTKNN 69

Query: 75  NANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 118
            +  E +L+RKYF G AF+  R ++G  D KRR+PSCPDPLHN
Sbjct: 70  KSYKEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]

BLAST of Cp4.1LG01g13730 vs. TrEMBL
Match: V4UC54_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017355mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.4e-12
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 38  VSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVDQKHNANAESELLRKYFKGKAFDRHRH 97
           ++ IWVC  CQ  A RIF  P   +  +K   V   + ++ E +L+RKYF G AF+  R 
Sbjct: 3   IATIWVCRDCQVGAIRIFSTP---NEVEKQQMVTNNNKSHKEGDLVRKYFGGSAFNFSRT 62

Query: 98  DEGFEDSKRRIPSCPDPLHN 118
           ++G  D KRR+PSCPDPLHN
Sbjct: 63  EKGIADDKRRVPSCPDPLHN 79

[Close]

BLAST of Cp4.1LG01g13730 vs. TrEMBL
Match: B9T057_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0030040 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.5e-12
Identity = 40/101 (39.60%), Postives = 64/101 (63.37%), Query Frame = 1


Query: 24  SSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTA------DKTLTVDQKHNAN 83
           SSS    + + ++++ QIW+CS C+A+A R FP    S+ +      ++   +   HNA 
Sbjct: 12  SSSMMMVVAVLLIFLLQIWICSDCKAEAIRAFPDNSNSNNSNMEKLRERRRNIPADHNA- 71

Query: 84  AESELLRKYFKGKAFD-RHRHDEGFEDSKRRIPSCPDPLHN 118
           ++ +L RK+F G+     +R ++GFED+KRR+PSCPDPLHN
Sbjct: 72  SKVDLFRKFFDGRVSSFNNRTEKGFEDNKRRVPSCPDPLHN 111

[Close]

BLAST of Cp4.1LG01g13730 vs. TrEMBL
Match: A0A061E6F8_THECC (Clavata3/esr-related 43, putative OS=Theobroma cacao GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.3e-11
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 21  SSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVDQKHNANAES 80
           SS     S  +++ I++  QIWVC  C+A A RI P        +     D K     + 
Sbjct: 7   SSRKLLYSSVVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTESQGMKDNK----GKG 66

Query: 81  ELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 118
           +L +KYF G++F  ++ D GFE+SKRR+PSCPDPLHN
Sbjct: 67  DLFQKYFNGRSFSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]

BLAST of Cp4.1LG01g13730 vs. NCBI nr
Match: gi|700196906|gb|KGN52083.1| (hypothetical protein Csa_5G609690 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 5.7e-37
Identity = 80/109 (73.39%), Postives = 94/109 (86.24%), Query Frame = 1


Query: 12  MCTRRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPS---HTADKTL 71
           M  RRI TSSSSSS+S+FA+LI ILWVSQIWVC HCQA+ASRIFPPPPP    H ADK+L
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 72  TVDQKHNANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 118
           + ++K NA  +++LL+KYF G+AFDRHRHDEGFEDSKR+IPSCPDPLHN
Sbjct: 61  SGEEKDNA--KNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Cp4.1LG01g13730 vs. NCBI nr
Match: gi|659092326|ref|XP_008447013.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-34
Identity = 83/117 (70.94%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 12  MCTRRIATSSSSSSSSS----FALLIFILWVSQIWVCSHCQAKASRIFPPPPPS-----H 71
           M  RRIATSSSSSSSSS    FA+LI ILWVSQIWVC HCQA+ASRIFPPPPP      H
Sbjct: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPH 60

Query: 72  TADKTLTVDQKHNANAESELLRKYFKGKAFDR--HRHDEGFEDSKRRIPSCPDPLHN 118
           T DK+L  ++K NA  ++ELL+KYF G+ FDR  HRHDEGFEDSKR+IPSCPDPLHN
Sbjct: 61  TTDKSLPGEEKDNA--KNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 115

[Close]

BLAST of Cp4.1LG01g13730 vs. NCBI nr
Match: gi|641858275|gb|KDO76997.1| (hypothetical protein CISIN_1g046114mg [Citrus sinensis])

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-15
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 15  RRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVDQKH 74
           R + +SSSSS S   A+L+ I+ V QIWVC  CQ  A RIF  P   +  +K   V + +
Sbjct: 10  RIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTP---NEVEKQQMVTKNN 69

Query: 75  NANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 118
            +  E +L+RKYF G AF+  R ++G  D KRR+PSCPDPLHN
Sbjct: 70  KSYKEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]

BLAST of Cp4.1LG01g13730 vs. NCBI nr
Match: gi|567912323|ref|XP_006448475.1| (hypothetical protein CICLE_v10017355mg [Citrus clementina])

HSP 1 Score: 79.0 bits (193), Expect = 6.3e-12
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 38  VSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVDQKHNANAESELLRKYFKGKAFDRHRH 97
           ++ IWVC  CQ  A RIF  P   +  +K   V   + ++ E +L+RKYF G AF+  R 
Sbjct: 3   IATIWVCRDCQVGAIRIFSTP---NEVEKQQMVTNNNKSHKEGDLVRKYFGGSAFNFSRT 62

Query: 98  DEGFEDSKRRIPSCPDPLHN 118
           ++G  D KRR+PSCPDPLHN
Sbjct: 63  EKGIADDKRRVPSCPDPLHN 79

[Close]

BLAST of Cp4.1LG01g13730 vs. NCBI nr
Match: gi|223528744|gb|EEF30754.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 40/101 (39.60%), Postives = 64/101 (63.37%), Query Frame = 1


Query: 24  SSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTA------DKTLTVDQKHNAN 83
           SSS    + + ++++ QIW+CS C+A+A R FP    S+ +      ++   +   HNA 
Sbjct: 12  SSSMMMVVAVLLIFLLQIWICSDCKAEAIRAFPDNSNSNNSNMEKLRERRRNIPADHNA- 71

Query: 84  AESELLRKYFKGKAFD-RHRHDEGFEDSKRRIPSCPDPLHN 118
           ++ +L RK+F G+     +R ++GFED+KRR+PSCPDPLHN
Sbjct: 72  SKVDLFRKFFDGRVSSFNNRTEKGFEDNKRRVPSCPDPLHN 111

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g13730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g13730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66_CUCSA	3.9e-37	73.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609690 PE=4 SV=1	[more]
A0A067GNI3_CITSI	3.2e-15	47.57	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046114mg PE=4 SV=1	[more]
V4UC54_9ROSI	4.4e-12	46.25	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017355mg PE=4 SV=1	[more]
B9T057_RICCO	7.5e-12	39.60	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0030040 PE=4 SV=1	[more]
A0A061E6F8_THECC	6.3e-11	41.24	Clavata3/esr-related 43, putative OS=Theobroma cacao GN=TCM_009879 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g13730 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g13730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196906\|gb\|KGN52083.1\|	5.7e-37	73.39	hypothetical protein Csa_5G609690 [Cucumis sativus]	[more]
gi\|659092326\|ref\|XP_008447013.1\|	1.5e-34	70.94	PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Cucumis melo]	[more]
gi\|641858275\|gb\|KDO76997.1\|	4.7e-15	47.57	hypothetical protein CISIN_1g046114mg [Citrus sinensis]	[more]
gi\|567912323\|ref\|XP_006448475.1\|	6.3e-12	46.25	hypothetical protein CICLE_v10017355mg [Citrus clementina]	[more]
gi\|223528744\|gb\|EEF30754.1\|	1.1e-11	39.60	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g13730.1	Cp4.1LG01g13730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37184	FAMILY NOT NAMED	coord: 28..117 score: 6.7
None	No IPR available	PANTHER	PTHR37184:SF1	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27-RELATED	coord: 28..117 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g13730	Cucsa.283550	Cucumber (Gy14) v1	cgycpeB0750
Cp4.1LG01g13730	CmaCh04G015070	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g13730	Cla020399	Watermelon (97103) v1	cpewmB427
Cp4.1LG01g13730	Csa5G609690	Cucumber (Chinese Long) v2	cpecuB439
Cp4.1LG01g13730	MELO3C012251	Melon (DHL92) v3.5.1	cpemeB363
Cp4.1LG01g13730	ClCG05G022690	Watermelon (Charleston Gray)	cpewcgB388
Cp4.1LG01g13730	CSPI05G25300	Wild cucumber (PI 183967)	cpecpiB439
Cp4.1LG01g13730	Lsi04G002510	Bottle gourd (USVL1VR-Ls)	cpelsiB352
Cp4.1LG01g13730	MELO3C012251.2	Melon (DHL92) v3.6.1	cpemedB423
Cp4.1LG01g13730	CsaV3_5G034340	Cucumber (Chinese Long) v3	cpecucB0543
Cp4.1LG01g13730	Bhi07G001102	Wax gourd	cpewgoB0557
Cp4.1LG01g13730	Carg01842	Silver-seed gourd	carcpeB1177
Cp4.1LG01g13730	Carg21593	Silver-seed gourd	carcpeB1452

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g13730	Cp4.1LG09g03100	Cucurbita pepo (Zucchini)	cpecpeB040

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g13730	Cucumber (Chinese Long) v3	cpecucB0474
Cp4.1LG01g13730	Wax gourd	cpewgoB0514
Cp4.1LG01g13730	Cucurbita pepo (Zucchini)	cpecpeB205
Cp4.1LG01g13730	Cucurbita pepo (Zucchini)	cpecpeB399
Cp4.1LG01g13730	Cucurbita maxima (Rimu)	cmacpeB323
Cp4.1LG01g13730	Cucurbita maxima (Rimu)	cmacpeB429
Cp4.1LG01g13730	Cucurbita maxima (Rimu)	cmacpeB737
Cp4.1LG01g13730	Cucurbita moschata (Rifu)	cmocpeB115
Cp4.1LG01g13730	Cucurbita moschata (Rifu)	cmocpeB285
Cp4.1LG01g13730	Cucurbita moschata (Rifu)	cmocpeB392
Cp4.1LG01g13730	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g13730	Cucurbita moschata (Rifu)	cmocpeB691
Cp4.1LG01g13730	Wild cucumber (PI 183967)	cpecpiB381
Cp4.1LG01g13730	Cucumber (Chinese Long) v2	cpecuB381
Cp4.1LG01g13730	Bottle gourd (USVL1VR-Ls)	cpelsiB371
Cp4.1LG01g13730	Watermelon (Charleston Gray)	cpewcgB401
Cp4.1LG01g13730	Watermelon (97103) v1	cpewmB470
Cp4.1LG01g13730	Melon (DHL92) v3.5.1	cpemeB395
Cp4.1LG01g13730	Cucumber (Gy14) v2	cgybcpeB063
Cp4.1LG01g13730	Cucumber (Gy14) v2	cgybcpeB648
Cp4.1LG01g13730	Melon (DHL92) v3.6.1	cpemedB458