Lsi04G002510 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G002510
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCLAVATA3/ESR (CLE)-related protein 27
Locationchr04 : 2578663 .. 2578992 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGTTTTTCTTCCGGCCGCCGGCAAGCCATGTTTACCAGAAGAATCGCCACTTCCTCCTCCTCTGCCTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCGCTGCCAAGTTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCACACGGCGGACAAATCACTTGCTAGCGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGCCACCGTCCCGATGAAGGATTCGAAGACAGCAAACGGAAAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

mRNA sequence

ATGTGGGGTTTTTCTTCCGGCCGCCGGCAAGCCATGTTTACCAGAAGAATCGCCACTTCCTCCTCCTCTGCCTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCGCTGCCAAGTTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCACACGGCGGACAAATCACTTGCTAGCGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGCCACCGTCCCGATGAAGGATTCGAAGACAGCAAACGGAAAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Coding sequence (CDS)

ATGTGGGGTTTTTCTTCCGGCCGCCGGCAAGCCATGTTTACCAGAAGAATCGCCACTTCCTCCTCCTCTGCCTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCGCTGCCAAGTTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCACACGGCGGACAAATCACTTGCTAGCGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGCCACCGTCCCGATGAAGGATTCGAAGACAGCAAACGGAAAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Protein sequence

MWGFSSGRRQAMFTRRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKSLASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN
Homology
[Close]
BLAST of Lsi04G002510 vs. Swiss-Prot
Match: CLE43_ARATH (CLAVATA3/ESR (CLE)-related protein 43 OS=Arabidopsis thaliana GN=CLE43 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.2e-06
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 1 

Query: 25  FAILILILWVSQIWVCCRCQVRASRIFPPPPHTA---DKSLASEEKDNAKNE----LLQK 84
           F++ +L++ + QIW+      R  R  P         D++     K+  KNE    L Q+
Sbjct: 10  FSVALLLISLFQIWL-----FREGRQVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLFQR 69

Query: 85  YFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           YF GR+F  +  +  FEDS R+IPS PD LHN
Sbjct: 70  YFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]
BLAST of Lsi04G002510 vs. TrEMBL
Match: A0A0A0KR66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.5e-41
Identity = 89/107 (83.18%), Postives = 91/107 (85.05%), Query Frame = 1 

Query: 12  MFTRRIATSSSS----AFAILILILWVSQIWVCCRCQVRASRIFPPPP-----HTADKSL 71
           MF RRI TSSSS    AFAILILILWVSQIWVCC CQ RASRIFPPPP     H ADKSL
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 72  ASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           + EEKDNAKN+LLQKYFNGRAFDRHR DEGFEDSKRKIPSCPDPLHN
Sbjct: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]
BLAST of Lsi04G002510 vs. TrEMBL
Match: A0A061E6F8_THECC (Clavata3/esr-related 43, putative OS=Theobroma cacao GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-14
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1 

Query: 2   WGFSSGRRQAMFTRRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKS 61
           W FSS        R++  SS     +++LI++  QIWVCC C+  A RI P         
Sbjct: 4   WFFSS--------RKLLYSS----VVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTE 63

Query: 62  LASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
               + +  K +L QKYFNGR+F  ++ D GFE+SKR++PSCPDPLHN
Sbjct: 64  SQGMKDNKGKGDLFQKYFNGRSFSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]
BLAST of Lsi04G002510 vs. TrEMBL
Match: A0A067GNI3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046114mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.7e-14
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1 

Query: 15  RRIATSSSSAF----AILILILWVSQIWVCCRCQVRASRIFPPPPHTADKSLASEEKDNA 74
           R + +SSSS+F    A+L++I+ V QIWVC  CQV A RIF  P     + + ++   + 
Sbjct: 10  RIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTPNEVEKQQMVTKNNKSY 69

Query: 75  KN-ELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           K  +L++KYF G AF+  R ++G  D KR++PSCPDPLHN
Sbjct: 70  KEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]
BLAST of Lsi04G002510 vs. TrEMBL
Match: F6HEW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03550 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-13
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 1 

Query: 15  RRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKSLASEEKDNAKNEL 74
           RRI  SS     +++LI+ +  IW+CC CQ  A RIFP      +K     +   +  +L
Sbjct: 7   RRIMFSS----LVVLLIISLLHIWLCCDCQAGAMRIFPGNGVGEEKGRHQMKARKSNEDL 66

Query: 75  LQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
            +K+FNGRAF  +R  +GF++SKR++PSCPDPLHN
Sbjct: 67  FRKFFNGRAFAFNRTAKGFDESKRRVPSCPDPLHN 97

[Close]
BLAST of Lsi04G002510 vs. TrEMBL
Match: A0A0D2PVJ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G190400 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-12
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 1 

Query: 1   MWGFSSGRRQAMFTRRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADK 60
           MW FSS        RR+  SS     +++LI+ V QIW+C  C+  A R+FP        
Sbjct: 3   MWFFSS--------RRVLNSSM----VVMLIISVLQIWICSDCRAGAIRVFPGN------ 62

Query: 61  SLASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
                 K   + EL Q YFNG +F     D+GFEDSKR++PSCPDPLHN
Sbjct: 63  ---EMRKMIERQELFQTYFNGTSFSFKGSDKGFEDSKRRVPSCPDPLHN 90

[Close]
BLAST of Lsi04G002510 vs. TAIR10
Match: AT1G25425.1 (AT1G25425.1 CLAVATA3/ESR-RELATED 43)

HSP 1 Score: 51.2 bits (121), Expect = 4.6e-07
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 1 

Query: 25  FAILILILWVSQIWVCCRCQVRASRIFPPPPHTA---DKSLASEEKDNAKNE----LLQK 84
           F++ +L++ + QIW+      R  R  P         D++     K+  KNE    L Q+
Sbjct: 10  FSVALLLISLFQIWL-----FREGRQVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLFQR 69

Query: 85  YFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           YF GR+F  +  +  FEDS R+IPS PD LHN
Sbjct: 70  YFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]
BLAST of Lsi04G002510 vs. NCBI nr
Match: gi|700196906|gb|KGN52083.1| (hypothetical protein Csa_5G609690 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 3.5e-41
Identity = 89/107 (83.18%), Postives = 91/107 (85.05%), Query Frame = 1 

Query: 12  MFTRRIATSSSS----AFAILILILWVSQIWVCCRCQVRASRIFPPPP-----HTADKSL 71
           MF RRI TSSSS    AFAILILILWVSQIWVCC CQ RASRIFPPPP     H ADKSL
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 72  ASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           + EEKDNAKN+LLQKYFNGRAFDRHR DEGFEDSKRKIPSCPDPLHN
Sbjct: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]
BLAST of Lsi04G002510 vs. NCBI nr
Match: gi|659092326|ref|XP_008447013.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-39
Identity = 90/115 (78.26%), Postives = 90/115 (78.26%), Query Frame = 1 

Query: 12  MFTRRIATSSSS--------AFAILILILWVSQIWVCCRCQVRASRIFPPPP-------H 71
           MF RRIATSSSS        AFAILILILWVSQIWVCC CQ RASRIFPPPP       H
Sbjct: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPH 60

Query: 72  TADKSLASEEKDNAKNELLQKYFNGRAFDR--HRPDEGFEDSKRKIPSCPDPLHN 110
           T DKSL  EEKDNAKNELLQKYFNGR FDR  HR DEGFEDSKRKIPSCPDPLHN
Sbjct: 61  TTDKSLPGEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 115

[Close]
BLAST of Lsi04G002510 vs. NCBI nr
Match: gi|590693483|ref|XP_007044346.1| (Clavata3/esr-related 43, putative [Theobroma cacao])

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-14
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1 

Query: 2   WGFSSGRRQAMFTRRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKS 61
           W FSS        R++  SS     +++LI++  QIWVCC C+  A RI P         
Sbjct: 4   WFFSS--------RKLLYSS----VVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTE 63

Query: 62  LASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
               + +  K +L QKYFNGR+F  ++ D GFE+SKR++PSCPDPLHN
Sbjct: 64  SQGMKDNKGKGDLFQKYFNGRSFSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]
BLAST of Lsi04G002510 vs. NCBI nr
Match: gi|641858275|gb|KDO76997.1| (hypothetical protein CISIN_1g046114mg [Citrus sinensis])

HSP 1 Score: 85.1 bits (209), Expect = 8.2e-14
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1 

Query: 15  RRIATSSSSAF----AILILILWVSQIWVCCRCQVRASRIFPPPPHTADKSLASEEKDNA 74
           R + +SSSS+F    A+L++I+ V QIWVC  CQV A RIF  P     + + ++   + 
Sbjct: 10  RIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTPNEVEKQQMVTKNNKSY 69

Query: 75  KN-ELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           K  +L++KYF G AF+  R ++G  D KR++PSCPDPLHN
Sbjct: 70  KEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]
BLAST of Lsi04G002510 vs. NCBI nr
Match: gi|225423983|ref|XP_002282631.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Vitis vinifera])

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-13
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 1 

Query: 15  RRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKSLASEEKDNAKNEL 74
           RRI  SS     +++LI+ +  IW+CC CQ  A RIFP      +K     +   +  +L
Sbjct: 7   RRIMFSS----LVVLLIISLLHIWLCCDCQAGAMRIFPGNGVGEEKGRHQMKARKSNEDL 66

Query: 75  LQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
            +K+FNGRAF  +R  +GF++SKR++PSCPDPLHN
Sbjct: 67  FRKFFNGRAFAFNRTAKGFDESKRRVPSCPDPLHN 97

The following BLAST results are available for this feature:
BLAST of Lsi04G002510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CLE43_ARATH8.2e-0635.87CLAVATA3/ESR (CLE)-related protein 43 OS=Arabidopsis thaliana GN=CLE43 PE=2 SV=1[more]
BLAST of Lsi04G002510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR66_CUCSA2.5e-4183.18Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609690 PE=4 SV=1[more]
A0A061E6F8_THECC2.0e-1442.59Clavata3/esr-related 43, putative OS=Theobroma cacao GN=TCM_009879 PE=4 SV=1[more]
A0A067GNI3_CITSI5.7e-1445.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046114mg PE=4 SV=1[more]
F6HEW7_VITVI2.2e-1344.21Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03550 PE=4 SV=... [more]
A0A0D2PVJ5_GOSRA3.1e-1243.12Uncharacterized protein OS=Gossypium raimondii GN=B456_005G190400 PE=4 SV=1[more]
BLAST of Lsi04G002510 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G25425.14.6e-0735.87 CLAVATA3/ESR-RELATED 43[more]
BLAST of Lsi04G002510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196906|gb|KGN52083.1|3.5e-4183.18hypothetical protein Csa_5G609690 [Cucumis sativus][more]
gi|659092326|ref|XP_008447013.1|2.5e-3978.26PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Cucumis melo][more]
gi|590693483|ref|XP_007044346.1|2.8e-1442.59Clavata3/esr-related 43, putative [Theobroma cacao][more]
gi|641858275|gb|KDO76997.1|8.2e-1445.00hypothetical protein CISIN_1g046114mg [Citrus sinensis][more]
gi|225423983|ref|XP_002282631.1|3.1e-1344.21PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G002510.1Lsi04G002510.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37184FAMILY NOT NAMEDcoord: 24..109
score: 9.1
NoneNo IPR availablePANTHERPTHR37184:SF1CLAVATA3/ESR (CLE)-RELATED PROTEIN 27-RELATEDcoord: 24..109
score: 9.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G002510Csa5G609690Cucumber (Chinese Long) v2culsiB368
Lsi04G002510CSPI05G25300Wild cucumber (PI 183967)cpilsiB372
Lsi04G002510Cucsa.283550Cucumber (Gy14) v1cgylsiB465
Lsi04G002510CmaCh04G015070Cucurbita maxima (Rimu)cmalsiB669
Lsi04G002510Cla020399Watermelon (97103) v1lsiwmB312
Lsi04G002510MELO3C012251Melon (DHL92) v3.5.1lsimeB281
Lsi04G002510ClCG05G022690Watermelon (Charleston Gray)lsiwcgB283
Lsi04G002510MELO3C012251.2Melon (DHL92) v3.6.1lsimedB297
Lsi04G002510Cla97C05G104560Watermelon (97103) v2lsiwmbB284
Lsi04G002510Bhi07G001102Wax gourdlsiwgoB380
Lsi04G002510Cp4.1LG01g13730Cucurbita pepo (Zucchini)cpelsiB352
Lsi04G002510Cp4.1LG09g03100Cucurbita pepo (Zucchini)cpelsiB032
Lsi04G002510Carg21593Silver-seed gourdcarlsiB953
Lsi04G002510Carg01842Silver-seed gourdcarlsiB767
Lsi04G002510CsaV3_5G034340Cucumber (Chinese Long) v3cuclsiB393
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G002510Wild cucumber (PI 183967)cpilsiB054
Lsi04G002510Wild cucumber (PI 183967)cpilsiB057
Lsi04G002510Cucumber (Chinese Long) v2culsiB054
Lsi04G002510Melon (DHL92) v3.5.1lsimeB288
Lsi04G002510Melon (DHL92) v3.5.1lsimeB294
Lsi04G002510Watermelon (Charleston Gray)lsiwcgB293
Lsi04G002510Watermelon (97103) v1lsiwmB329
Lsi04G002510Watermelon (97103) v1lsiwmB341
Lsi04G002510Cucumber (Gy14) v2cgyblsiB049
Lsi04G002510Cucumber (Gy14) v2cgyblsiB337
Lsi04G002510Melon (DHL92) v3.6.1lsimedB307
Lsi04G002510Silver-seed gourdcarlsiB539
Lsi04G002510Cucumber (Chinese Long) v3cuclsiB063
Lsi04G002510Cucumber (Chinese Long) v3cuclsiB060
Lsi04G002510Watermelon (97103) v2lsiwmbB282
Lsi04G002510Watermelon (97103) v2lsiwmbB294
Lsi04G002510Wax gourdlsiwgoB356
Lsi04G002510Bottle gourd (USVL1VR-Ls)lsilsiB103
Lsi04G002510Bottle gourd (USVL1VR-Ls)lsilsiB138
Lsi04G002510Cucumber (Gy14) v1cgylsiB340
Lsi04G002510Cucurbita maxima (Rimu)cmalsiB123
Lsi04G002510Cucurbita maxima (Rimu)cmalsiB283
Lsi04G002510Cucurbita maxima (Rimu)cmalsiB379
Lsi04G002510Cucurbita maxima (Rimu)cmalsiB675
Lsi04G002510Cucurbita maxima (Rimu)cmalsiB683
Lsi04G002510Cucurbita moschata (Rifu)cmolsiB111
Lsi04G002510Cucurbita moschata (Rifu)cmolsiB272
Lsi04G002510Cucurbita moschata (Rifu)cmolsiB364
Lsi04G002510Cucurbita moschata (Rifu)cmolsiB660
Lsi04G002510Cucurbita moschata (Rifu)cmolsiB668
Lsi04G002510Cucurbita moschata (Rifu)cmolsiB677
Lsi04G002510Cucurbita pepo (Zucchini)cpelsiB148
Lsi04G002510Cucurbita pepo (Zucchini)cpelsiB549