Csa5G609690 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G609690
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	CLAVATA3/ESR (CLE)-related protein 43
Location	Chr5 : 23619333 .. 23619974 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCTCTTATATCTCTAACCTAAGCCTCAAATCCATTTCCATACACAATACAATTTCCTCTCTATTTCTTTTTTCTTTTTTTCTTTTTTATACCAATCTCAATTTACTATGACATTCATACATGTCCACCCAGATAGAGGACGGATTTGAGTGTTTTTGAAATATTTCAAGTTTTTTTTGTTTTTTTTTTCTCTTTGTGGGTTTTTCTTCCGGCCGCCGGCAAAGCCACCATGTTTAACAGAAGAATCACCACTTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCTCCGCCGCCGCATCCAGCGGATAAATCACTGTCTGGTGAAGAAAAAGACAACGCCAAAAATGATCTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGTCACCGCCATGATGAAGGATTTGAAGACAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAGTAGGATTAATTATTCAATTTTACACTCTTTCCCGTCCAAAATACCCCCGTTTTTCTCTTCAATTTTTTCTTTGTTTTTGTTACACTC

mRNA sequence

ATGTTTAACAGAAGAATCACCACTTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCTCCGCCGCCGCATCCAGCGGATAAATCACTGTCTGGTGAAGAAAAAGACAACGCCAAAAATGATCTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGTCACCGCCATGATGAAGGATTTGAAGACAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG

Coding sequence (CDS)

ATGTTTAACAGAAGAATCACCACTTCCTCCTCCTCTTCCTCCACCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGTCAAGCTAGAGCATCACGGATTTTTCCTCCTCCTCCTCCTCCTCCGCCGCCGCATCCAGCGGATAAATCACTGTCTGGTGAAGAAAAAGACAACGCCAAAAATGATCTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGTCACCGCCATGATGAAGGATTTGAAGACAGTAAACGGAAAATACCCAGTTGTCCAGATCCTCTTCATAATTAG

Protein sequence

MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN*

Homology

[Close]

BLAST of Csa5G609690 vs. TrEMBL
Match: A0A0A0KR66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 2.9e-58
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60
           MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Csa5G609690 vs. TrEMBL
Match: A0A061E6F8_THECC (Clavata3/esr-related 43, putative OS=Theobroma cacao GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 10  SSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAK 69
           SS     +  +++LI++  QIWVCC C+A A RI P                G + +  K
Sbjct: 7   SSRKLLYSSVVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTES-----QGMKDNKGK 66

Query: 70  NDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            DL QKYFNGR+F  ++ D GFE+SKR++PSCPDPLHN
Sbjct: 67  GDLFQKYFNGRSFSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]

BLAST of Csa5G609690 vs. TrEMBL
Match: A0A067GNI3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046114mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-15
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 1


Query: 4   RRITTSSSSSSTSAFA-ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSG 63
           +RI  SSSSSS S  A +L++I+ V QIWVC  CQ  A RIF  P          K+   
Sbjct: 9   KRIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTPNEVEKQQMVTKN--- 68

Query: 64  EEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
             K   + DL++KYF G AF+  R ++G  D KR++PSCPDPLHN
Sbjct: 69  -NKSYKEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]

BLAST of Csa5G609690 vs. TrEMBL
Match: F6HEW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03550 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-13
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 20  ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDN-------AKNDL 79
           +++LI+ +  IW+CC CQA A RIFP             +  GEEK         +  DL
Sbjct: 15  VVLLIISLLHIWLCCDCQAGAMRIFPG------------NGVGEEKGRHQMKARKSNEDL 74

Query: 80  LQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            +K+FNGRAF  +R  +GF++SKR++PSCPDPLHN
Sbjct: 75  FRKFFNGRAFAFNRTAKGFDESKRRVPSCPDPLHN 97

[Close]

BLAST of Csa5G609690 vs. TrEMBL
Match: M5XRN8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013758mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 20  ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDN-AKNDLLQKYFN 79
           ++IL++ V QIWVCC C+A A R+FP          A+ S + + K N ++  L  KYF 
Sbjct: 15  VVILVISVLQIWVCCDCKAGAIRVFPGHTNALSKGEAESSNTMQSKSNRSREALFHKYFG 74

Query: 80  G--RAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           G  RA   ++ ++G+EDSKR++PSCPD LHN
Sbjct: 75  GSVRASKFNKTEQGYEDSKRRVPSCPDQLHN 105

[Close]

BLAST of Csa5G609690 vs. TAIR10
Match: AT3G25905.1 (AT3G25905.1 CLAVATA3/ESR-RELATED 27)

HSP 1 Score: 50.4 bits (119), Expect = 7.8e-07
Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = 1


Query: 12  SSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKND 71
           SS T+   ++IL+ ++  ++ C + +  A RIFP  P            SG+ ++    D
Sbjct: 9   SSLTTTLLMVILLSYMLHLF-CVYSRVGAIRIFPETPA-----------SGKRQEE---D 68

Query: 72  LLQKYFNGRAFDRHRH--DEGFEDSKRKIPSCPDPLHN 108
           L++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 69  LMKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

[Close]

BLAST of Csa5G609690 vs. TAIR10
Match: AT1G25425.1 (AT1G25425.1 CLAVATA3/ESR-RELATED 43)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-06
Identity = 32/94 (34.04%), Postives = 46/94 (48.94%), Query Frame = 1


Query: 18  FAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKND----LL 77
           F++ +L++ + QIW+      R  R    P         D++     K+  KN+    L 
Sbjct: 10  FSVALLLISLFQIWLF-----REGR--QVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLF 69

Query: 78  QKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           Q+YF GR+F  +  +  FEDS R+IPS PD LHN
Sbjct: 70  QRYFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]

BLAST of Csa5G609690 vs. NCBI nr
Match: gi|700196906|gb|KGN52083.1| (hypothetical protein Csa_5G609690 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 4.1e-58
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60
           MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
           SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Csa5G609690 vs. NCBI nr
Match: gi|659092326|ref|XP_008447013.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 7.0e-50
Identity = 101/115 (87.83%), Postives = 102/115 (88.70%), Query Frame = 1


Query: 1   MFNRRITTS----SSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPP--PPH 60
           MFNRRI TS    SSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPP  PPH
Sbjct: 1   MFNRRIATSSSSSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPSPPH 60

Query: 61  PADKSLSGEEKDNAKNDLLQKYFNGRAFDR--HRHDEGFEDSKRKIPSCPDPLHN 108
             DKSL GEEKDNAKN+LLQKYFNGR FDR  HRHDEGFEDSKRKIPSCPDPLHN
Sbjct: 61  TTDKSLPGEEKDNAKNELLQKYFNGRTFDRHHHRHDEGFEDSKRKIPSCPDPLHN 115

[Close]

BLAST of Csa5G609690 vs. NCBI nr
Match: gi|590693483|ref|XP_007044346.1| (Clavata3/esr-related 43, putative [Theobroma cacao])

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-15
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 10  SSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAK 69
           SS     +  +++LI++  QIWVCC C+A A RI P                G + +  K
Sbjct: 7   SSRKLLYSSVVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTES-----QGMKDNKGK 66

Query: 70  NDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            DL QKYFNGR+F  ++ D GFE+SKR++PSCPDPLHN
Sbjct: 67  GDLFQKYFNGRSFSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]

BLAST of Csa5G609690 vs. NCBI nr
Match: gi|641858275|gb|KDO76997.1| (hypothetical protein CISIN_1g046114mg [Citrus sinensis])

HSP 1 Score: 88.2 bits (217), Expect = 9.6e-15
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 1


Query: 4   RRITTSSSSSSTSAFA-ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSG 63
           +RI  SSSSSS S  A +L++I+ V QIWVC  CQ  A RIF  P          K+   
Sbjct: 9   KRIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTPNEVEKQQMVTKN--- 68

Query: 64  EEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
             K   + DL++KYF G AF+  R ++G  D KR++PSCPDPLHN
Sbjct: 69  -NKSYKEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]

BLAST of Csa5G609690 vs. NCBI nr
Match: gi|225423983|ref|XP_002282631.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Vitis vinifera])

HSP 1 Score: 82.4 bits (202), Expect = 5.3e-13
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 20  ILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDN-------AKNDL 79
           +++LI+ +  IW+CC CQA A RIFP             +  GEEK         +  DL
Sbjct: 15  VVLLIISLLHIWLCCDCQAGAMRIFPG------------NGVGEEKGRHQMKARKSNEDL 74

Query: 80  LQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 108
            +K+FNGRAF  +R  +GF++SKR++PSCPDPLHN
Sbjct: 75  FRKFFNGRAFAFNRTAKGFDESKRRVPSCPDPLHN 97

The following BLAST results are available for this feature:

BLAST of Csa5G609690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66_CUCSA	2.9e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G609690 PE=4 SV=1	[more]
A0A061E6F8_THECC	1.8e-15	44.90	Clavata3/esr-related 43, putative OS=Theobroma cacao GN=TCM_009879 PE=4 SV=1	[more]
A0A067GNI3_CITSI	6.7e-15	46.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046114mg PE=4 SV=1	[more]
F6HEW7_VITVI	3.7e-13	44.21	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03550 PE=4 SV=...	[more]
M5XRN8_PRUPE	2.4e-12	43.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013758mg PE=4 SV=1	[more]

BLAST of Csa5G609690 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25905.1	7.8e-07	33.67	CLAVATA3/ESR-RELATED 27	[more]
AT1G25425.1	1.7e-06	34.04	CLAVATA3/ESR-RELATED 43	[more]

BLAST of Csa5G609690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196906\|gb\|KGN52083.1\|	4.1e-58	100.00	hypothetical protein Csa_5G609690 [Cucumis sativus]	[more]
gi\|659092326\|ref\|XP_008447013.1\|	7.0e-50	87.83	PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Cucumis melo]	[more]
gi\|590693483\|ref\|XP_007044346.1\|	2.5e-15	44.90	Clavata3/esr-related 43, putative [Theobroma cacao]	[more]
gi\|641858275\|gb\|KDO76997.1\|	9.6e-15	46.67	hypothetical protein CISIN_1g046114mg [Citrus sinensis]	[more]
gi\|225423983\|ref\|XP_002282631.1\|	5.3e-13	44.21	PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU105238	cucumber EST collection version 3.0	transcribed_cluster
CU129005	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G609690.1	Csa5G609690.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105238	CU105238	transcribed_cluster
CU129005	CU129005	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37184	FAMILY NOT NAMED	coord: 17..107 score: 5.1
None	No IPR available	PANTHER	PTHR37184:SF1	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27-RELATED	coord: 17..107 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G609690	Cla020399	Watermelon (97103) v1	cuwmB401
Csa5G609690	MELO3C012251	Melon (DHL92) v3.5.1	cumeB377
Csa5G609690	ClCG05G022690	Watermelon (Charleston Gray)	cuwcgB394
Csa5G609690	Lsi04G002510	Bottle gourd (USVL1VR-Ls)	culsiB368
Csa5G609690	MELO3C012251.2	Melon (DHL92) v3.6.1	cumedB359
Csa5G609690	Cla97C05G104560	Watermelon (97103) v2	cuwmbB383
Csa5G609690	Bhi07G001102	Wax gourd	cuwgoB512
Csa5G609690	CSPI05G25300	Wild cucumber (PI 183967)	cpicuB239
Csa5G609690	Cucsa.283550	Cucumber (Gy14) v1	cgycuB410
Csa5G609690	CmaCh04G015070	Cucurbita maxima (Rimu)	cmacuB748
Csa5G609690	Cp4.1LG01g13730	Cucurbita pepo (Zucchini)	cpecuB439
Csa5G609690	Cp4.1LG09g03100	Cucurbita pepo (Zucchini)	cpecuB041
Csa5G609690	Carg01842	Silver-seed gourd	carcuB0857
Csa5G609690	Carg21593	Silver-seed gourd	carcuB1057

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G609690	Melon (DHL92) v3.6.1	cumedB375
Csa5G609690	Silver-seed gourd	carcuB0626
Csa5G609690	Watermelon (97103) v2	cuwmbB377
Csa5G609690	Watermelon (97103) v2	cuwmbB390
Csa5G609690	Wax gourd	cuwgoB482
Csa5G609690	Wax gourd	cuwgoB495
Csa5G609690	Cucumber (Chinese Long) v2	cucuB031
Csa5G609690	Cucumber (Chinese Long) v2	cucuB030
Csa5G609690	Cucumber (Gy14) v1	cgycuB304
Csa5G609690	Cucurbita maxima (Rimu)	cmacuB135
Csa5G609690	Cucurbita maxima (Rimu)	cmacuB295
Csa5G609690	Cucurbita maxima (Rimu)	cmacuB417
Csa5G609690	Cucurbita maxima (Rimu)	cmacuB735
Csa5G609690	Cucurbita maxima (Rimu)	cmacuB764
Csa5G609690	Cucurbita moschata (Rifu)	cmocuB282
Csa5G609690	Cucurbita moschata (Rifu)	cmocuB406
Csa5G609690	Cucurbita moschata (Rifu)	cmocuB738
Csa5G609690	Cucurbita moschata (Rifu)	cmocuB724
Csa5G609690	Cucurbita moschata (Rifu)	cmocuB755
Csa5G609690	Melon (DHL92) v3.5.1	cumeB392
Csa5G609690	Watermelon (Charleston Gray)	cuwcgB400
Csa5G609690	Watermelon (97103) v1	cuwmB425
Csa5G609690	Watermelon (97103) v1	cuwmB441
Csa5G609690	Cucurbita pepo (Zucchini)	cpecuB190
Csa5G609690	Cucurbita pepo (Zucchini)	cpecuB434
Csa5G609690	Cucurbita pepo (Zucchini)	cpecuB682
Csa5G609690	Bottle gourd (USVL1VR-Ls)	culsiB346
Csa5G609690	Bottle gourd (USVL1VR-Ls)	culsiB383
Csa5G609690	Cucumber (Gy14) v2	cgybcuB033
Csa5G609690	Cucumber (Gy14) v2	cgybcuB223