MELO3C008634 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008634
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP synthase subunit a
Location	chr5 : 15854065 .. 15854373 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTTAATTTCAAACGAATTCAAATGTACGAAAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTGGAAACATTTGAAGCAAATTCTTCAAGCCGAGAACTATAACAATTACTCCCCTGATGAACCCAACTGTAAGATTTCCTTTTCTCATTTCCATCATTACTCTCTTGCTATTTCTCCTACATTTGATTACGCCTTTGACTTGAGAAGAACTTTGTTTCTTGCTGCTTTGATGCATGGGCTGCGACTTTTTTTTCTTTCATAA

mRNA sequence

ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTTAATTTCAAACGAATTCAAATGTACGAAAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTGGAAACATTTGAAGCAAATTCTTCAAGCCGAGAACTATAACAATTACTCCCCTGATGAACCCAACTGTAAGATTTCCTTTTCTCATTTCCATCATTACTCTCTTGCTATTTCTCCTACATTTGATTACGCCTTTGACTTGAGAAGAACTTTGTTTCTTGCTGCTTTGATGCATGGGCTGCGACTTTTTTTTCTTTCATAA

Coding sequence (CDS)

ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTTAATTTCAAACGAATTCAAATGTACGAAAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTGGAAACATTTGAAGCAAATTCTTCAAGCCGAGAACTATAACAATTACTCCCCTGATGAACCCAACTGTAAGATTTCCTTTTCTCATTTCCATCATTACTCTCTTGCTATTTCTCCTACATTTGATTACGCCTTTGACTTGAGAAGAACTTTGTTTCTTGCTGCTTTGATGCATGGGCTGCGACTTTTTTTTCTTTCATAA

Protein sequence

MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNCKISFSHFHHYSLAISPTFDYAFDLRRTLFLAALMHGLRLFFLS*

Homology

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BLAST of MELO3C008634 vs. TrEMBL
Match: A0A0A0LJN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077540 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.2e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 59
          ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPN
Sbjct: 1  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPN 58

[Close]

BLAST of MELO3C008634 vs. TrEMBL
Match: A0A068UZW1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038949001 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.4e-23
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 59
          ME EV+EAE+VLP HLNFKR+QMYEKYPKGQ+RGRHWKHLKQI+QAENY NY+PDEPN
Sbjct: 1  MEAEVVEAEIVLPTHLNFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYAPDEPN 58

[Close]

BLAST of MELO3C008634 vs. TrEMBL
Match: A0A067LEK3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17270 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.3e-23
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1   MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 59
           MEPEVI+AELVLP HL+FKRIQMYEKYPKGQ+RGRHWKHLKQILQAEN+ NY PDEPN
Sbjct: 107 MEPEVIKAELVLPTHLSFKRIQMYEKYPKGQARGRHWKHLKQILQAENFQNYPPDEPN 164

[Close]

BLAST of MELO3C008634 vs. TrEMBL
Match: M5VTH2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024988mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-22
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1


Query: 1   MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 59
           MEPEV+ AELVLP HL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY P+EPN
Sbjct: 121 MEPEVVHAELVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPNEPN 178

[Close]

BLAST of MELO3C008634 vs. TrEMBL
Match: A0A0K9RXK1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_018140 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-22
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 59
          ME EV+E++LVLP HL FK++QMYEKYPKGQSRGRHWKHLKQILQAENYNNY PDEPN
Sbjct: 1  MEREVLESDLVLPTHLKFKKVQMYEKYPKGQSRGRHWKHLKQILQAENYNNYPPDEPN 58

[Close]

BLAST of MELO3C008634 vs. TAIR10
Match: AT4G38495.1 (AT4G38495.1 YL1 nuclear, C-terminal (InterPro:IPR013272))

HSP 1 Score: 74.3 bits (181), Expect = 4.8e-14
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEP 58
          ME E++EA++V+   L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +  PD P
Sbjct: 1  MERELMEADIVVASRLSFKKKQAYEKYPKAQSSSRRWKHLKQILQAENFPDLPPDLP 57

[Close]

BLAST of MELO3C008634 vs. NCBI nr
Match: gi|659082319|ref|XP_008441777.1| (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 59
          MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN
Sbjct: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 58

[Close]

BLAST of MELO3C008634 vs. NCBI nr
Match: gi|449470210|ref|XP_004152811.1| (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 7.5e-25
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 59
          ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPN
Sbjct: 1  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPN 58

[Close]

BLAST of MELO3C008634 vs. NCBI nr
Match: gi|694380660|ref|XP_009366445.1| (PREDICTED: chromatin-remodeling complex subunit ies6 [Pyrus x bretschneideri])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-23
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 59
          MEPEV++AELVLP HL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY PDEPN
Sbjct: 1  MEPEVVDAELVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPN 58

[Close]

BLAST of MELO3C008634 vs. NCBI nr
Match: gi|1009150865|ref|XP_015893252.1| (PREDICTED: chromatin-remodeling complex subunit ies6 [Ziziphus jujuba])

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 59
          MEPEVI+AE+VLP HL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY PDEPN
Sbjct: 1  MEPEVIQAEMVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPN 58

[Close]

BLAST of MELO3C008634 vs. NCBI nr
Match: gi|661882528|emb|CDP13842.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 114.8 bits (286), Expect = 9.1e-23
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 59
          ME EV+EAE+VLP HLNFKR+QMYEKYPKGQ+RGRHWKHLKQI+QAENY NY+PDEPN
Sbjct: 1  MEAEVVEAEIVLPTHLNFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYAPDEPN 58

The following BLAST results are available for this feature:

BLAST of MELO3C008634 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJN6_CUCSA	5.2e-25	96.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077540 PE=4 SV=1	[more]
A0A068UZW1_COFCA	6.4e-23	84.48	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038949001 PE=4 SV=1	[more]
A0A067LEK3_JATCU	8.3e-23	87.93	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17270 PE=4 SV=1	[more]
M5VTH2_PRUPE	1.4e-22	86.21	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024988mg PE=4 S...	[more]
A0A0K9RXK1_SPIOL	3.2e-22	84.48	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_018140 PE=4 SV=1	[more]

BLAST of MELO3C008634 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38495.1	4.8e-14	59.65	YL1 nuclear, C-terminal (InterPro:IPR013272)	[more]

BLAST of MELO3C008634 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082319\|ref\|XP_008441777.1\|	2.3e-26	100.00	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]	[more]
gi\|449470210\|ref\|XP_004152811.1\|	7.5e-25	96.55	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus]	[more]
gi\|694380660\|ref\|XP_009366445.1\|	3.1e-23	87.93	PREDICTED: chromatin-remodeling complex subunit ies6 [Pyrus x bretschneideri]	[more]
gi\|1009150865\|ref\|XP_015893252.1\|	4.1e-23	87.93	PREDICTED: chromatin-remodeling complex subunit ies6 [Ziziphus jujuba]	[more]
gi\|661882528\|emb\|CDP13842.1\|	9.1e-23	84.48	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0006338	chromatin remodeling
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0031011	Ino80 complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0031011	Ino80 complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU50354	melon EST collection version 4.0	transcribed_cluster
MU66534	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008634T1	MELO3C008634T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU66534	MU66534	transcribed_cluster
MU50354	MU50354	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31200	FAMILY NOT NAMED	coord: 1..58 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008634	Csa2G077540	Cucumber (Chinese Long) v2	cumeB137
MELO3C008634	Cla007883	Watermelon (97103) v1	mewmB428
MELO3C008634	ClCG11G010360	Watermelon (Charleston Gray)	mewcgB369
MELO3C008634	Cla97C11G216590	Watermelon (97103) v2	mewmbB372
MELO3C008634	CSPI02G07560	Wild cucumber (PI 183967)	cpimeB142
MELO3C008634	Cucsa.178270	Cucumber (Gy14) v1	cgymeB321
MELO3C008634	CmaCh12G009770	Cucurbita maxima (Rimu)	cmameB178
MELO3C008634	CmoCh12G009800	Cucurbita moschata (Rifu)	cmomeB167
MELO3C008634	Lsi11G009020	Bottle gourd (USVL1VR-Ls)	lsimeB117
MELO3C008634	Cp4.1LG07g08120	Cucurbita pepo (Zucchini)	cpemeB780
MELO3C008634	CsGy2G007800	Cucumber (Gy14) v2	cgybmeB125
MELO3C008634	Carg23460	Silver-seed gourd	carmeB0487
MELO3C008634	CsaV3_2G009990	Cucumber (Chinese Long) v3	cucmeB144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008634	Wax gourd	mewgoB458
MELO3C008634	Cucurbita maxima (Rimu)	cmameB739
MELO3C008634	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008634	Cucurbita pepo (Zucchini)	cpemeB106