MU66534 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU66534
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA/RNA polymerases superfamily protein
Location	chr5 : 15739665 .. 15854407 (-)
Sequence length	745

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATTTAATTCAGTATTAAACAAGAGTTTATTAAGATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTTAATTTCAAACGAATTCAAATGTACGAAAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTGGAAACATTTGAAGCAAATTCTTCAAGCCGAGAACTATAACAATTACTCCCCTGATGAACCCAACTCTAGATTCAAGTACAAGGGGGTAGGGACCAGGGACTGTGGTCCTACCCAAAGTTAGCTCAGCCATAAAGGCCAATAAGCTACTTAACCAAGGTACCTAGAGTATCTTGGCTAGTGTAGTAGACCCTAGAGAGCCCGAGGTTTTCTTATCATCTGAACCAGTGGTAAGGGAATACCATGATGTTTTTCCAGAAGAGCTTCCAGGACTTCCGCCTCACAGAGAGATTGATTTTGGTATTGAGTTAGAGCCAGACACTTTTCCCATATCGGAGCTCCATACAGAATGTCCCCAGATAAGCTGAAGGTCCAGTTGCAGGAGTTGCTGGACAAGGGTTTCTTCCGAGTCGGTCTTCTCATGTGCGAGCCCCTTTAGTGTTCGAGCCTCTCCCCTCAAACGCTTAAGCCGAGTTGATTTCTCCCTACTCCGAGTCGAATGCGTAGACATAAGCCAAACCCAAGCAGAGTCCACATTTAGTCGAGTCATAAACTGCTCCTCGGTCATGAAAAAGAAGCTCCCCCTCTCACTGATTGCCTTCATC

Library


Library category	ESTs
melon CM-TEa library	1

Homology

[Close]

BLAST of MU66534 vs. TrEMBL
Match: A0A0A0LJN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077540 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 34  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 93
           ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPN
Sbjct: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPN 58

Query: 94   153
           
Sbjct: 61   58

Query: 154  208
           
Sbjct: 121  58

[Close]

BLAST of MU66534 vs. TrEMBL
Match: E5GBB7_CUCME (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.1e-24
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 2


Query: 200 NPTLDSSTRG*GPGTVVLPKVSSAIKANKLLNQGT*SILASVVDPREPEVFLSSEPVVRE 259
           NP   +S +  G G+  LP+V SAI+A+KLL+QGT  ILASVVD RE +V LSSEPVVR+
Sbjct: 736 NPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRD 795

Query: 260 YHDVFPEELPGLPPHREIDFGIELEPDTFPIS 319
           Y DVFPEELPGLPPHRE++F IELEP T PIS
Sbjct: 796 YPDVFPEELPGLPPHREVEFAIELEPGTVPIS 827

Query: 320  379
           
Sbjct: 856  827

Query: 380  439
           
Sbjct: 916  827

Query: 440  476
           
Sbjct: 976  827

[Close]

BLAST of MU66534 vs. TrEMBL
Match: E5GBB7_CUCME (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 8.2e+00
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 1


Query: 478 APYRMSP---DKLKVQLQELLDKGFFR 537
           APYRM+P    +LKVQLQELLDKGF R
Sbjct: 829 APYRMAPAELKELKVQLQELLDKGFIR 855

Query: 538  550
           
Sbjct: 889  855

HSP 2 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 10  SIKQEFIKMEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNY 69
           S+ QE  KMEPEVI+AELVLP HL+FKRIQMYEKYPKGQ+RGRHWKHLKQILQAEN+ NY
Sbjct: 101 SVNQE--KMEPEVIKAELVLPTHLSFKRIQMYEKYPKGQARGRHWKHLKQILQAENFQNY 160

Query: 70  SPDEPN 129
            PDEPN
Sbjct: 161 PPDEPN 164

Query: 130  189
           
Sbjct: 221  164

Query: 190  208
           
Sbjct: 281  164

[Close]

BLAST of MU66534 vs. TrEMBL
Match: A0A068UZW1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038949001 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 34  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 93
           ME EV+EAE+VLP HLNFKR+QMYEKYPKGQ+RGRHWKHLKQI+QAENY NY+PDEPN
Sbjct: 1   MEAEVVEAEIVLPTHLNFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYAPDEPN 58

Query: 94   153
           
Sbjct: 61   58

Query: 154  208
           
Sbjct: 121  58

[Close]

BLAST of MU66534 vs. TrEMBL
Match: M5VTH2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024988mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.4e-22
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1


Query: 34  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 93
           MEPEV+ AELVLP HL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY P+EPN
Sbjct: 121 MEPEVVHAELVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPNEPN 178

Query: 94   153
           
Sbjct: 181  178

Query: 154  208
           
Sbjct: 241  178

[Close]

BLAST of MU66534 vs. TAIR10
Match: AT4G38495.1 (AT4G38495.1 YL1 nuclear, C-terminal (InterPro:IPR013272))

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-13
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 34  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEP 93
           ME E++EA++V+   L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +  PD P
Sbjct: 1   MERELMEADIVVASRLSFKKKQAYEKYPKAQSSSRRWKHLKQILQAENFPDLPPDLP 57

Query: 94   153
           
Sbjct: 61   57

Query: 154  205
           
Sbjct: 121  57

[Close]

BLAST of MU66534 vs. NCBI nr
Match: gi|659082319|ref|XP_008441777.1| (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 34  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 93
           MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN
Sbjct: 1   MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 58

Query: 94   153
           
Sbjct: 61   58

Query: 154  208
           
Sbjct: 121  58

[Close]

BLAST of MU66534 vs. NCBI nr
Match: gi|449470210|ref|XP_004152811.1| (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 6.8e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 34  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 93
           ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPN
Sbjct: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPN 58

Query: 94   153
           
Sbjct: 61   58

Query: 154  208
           
Sbjct: 121  58

[Close]

BLAST of MU66534 vs. NCBI nr
Match: gi|307135903|gb|ADN33767.1| (gag protease polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 2


Query: 200 NPTLDSSTRG*GPGTVVLPKVSSAIKANKLLNQGT*SILASVVDPREPEVFLSSEPVVRE 259
           NP   +S +  G G+  LP+V SAI+A+KLL+QGT  ILASVVD RE +V LSSEPVVR+
Sbjct: 736 NPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSSEPVVRD 795

Query: 260 YHDVFPEELPGLPPHREIDFGIELEPDTFPIS 319
           Y DVFPEELPGLPPHRE++F IELEP T PIS
Sbjct: 796 YPDVFPEELPGLPPHREVEFAIELEPGTVPIS 827

Query: 320  379
           
Sbjct: 856  827

Query: 380  439
           
Sbjct: 916  827

Query: 440  476
           
Sbjct: 976  827

[Close]

BLAST of MU66534 vs. NCBI nr
Match: gi|643739977|gb|KDP45663.1| (hypothetical protein JCGZ_17270 [Jatropha curcas])

HSP 1 Score: 116.7 bits (291), Expect = 5.8e-23
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 10  SIKQEFIKMEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNY 69
           S+ QE  KMEPEVI+AELVLP HL+FKRIQMYEKYPKGQ+RGRHWKHLKQILQAEN+ NY
Sbjct: 101 SVNQE--KMEPEVIKAELVLPTHLSFKRIQMYEKYPKGQARGRHWKHLKQILQAENFQNY 160

Query: 70  SPDEPN 129
            PDEPN
Sbjct: 161 PPDEPN 164

Query: 130  189
           
Sbjct: 221  164

Query: 190  208
           
Sbjct: 281  164

[Close]

BLAST of MU66534 vs. NCBI nr
Match: gi|694380660|ref|XP_009366445.1| (PREDICTED: chromatin-remodeling complex subunit ies6 [Pyrus x bretschneideri])

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 34  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPN 93
           MEPEV++AELVLP HL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY PDEPN
Sbjct: 1   MEPEVVDAELVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPN 58

Query: 94   153
           
Sbjct: 61   58

Query: 154  208
           
Sbjct: 121  58

The following BLAST results are available for this feature:

BLAST of MU66534 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJN6_CUCSA	1.3e-24	96.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077540 PE=4 SV=1	[more]
E5GBB7_CUCME	8.1e-24	67.39	Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB7_CUCME	8.2e+00	74.07	Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A068UZW1_COFCA	1.5e-22	84.48	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038949001 PE=4 SV=1	[more]
M5VTH2_PRUPE	3.4e-22	86.21	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024988mg PE=4 S...	[more]

BLAST of MU66534 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38495.1	1.2e-13	59.65	YL1 nuclear, C-terminal (InterPro:IPR013272)	[more]

BLAST of MU66534 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082319\|ref\|XP_008441777.1\|	2.1e-25	100.00	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]	[more]
gi\|449470210\|ref\|XP_004152811.1\|	6.8e-24	96.55	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus]	[more]
gi\|307135903\|gb\|ADN33767.1\|	1.2e-23	67.39	gag protease polyprotein [Cucumis melo subsp. melo]	[more]
gi\|643739977\|gb\|KDP45663.1\|	5.8e-23	83.33	hypothetical protein JCGZ_17270 [Jatropha curcas]	[more]
gi\|694380660\|ref\|XP_009366445.1\|	2.9e-22	87.93	PREDICTED: chromatin-remodeling complex subunit ies6 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C008632	MELO3C008632	gene
MELO3C008634	MELO3C008634	gene
MELO3C008631	MELO3C008631	gene
MELO3C008633	MELO3C008633	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
TEa0017M19	TEa0017M19	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31200	FAMILY NOT NAMED	coord: 1..58 score: 2.4