MELO3C008633 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008633
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Regulator of chromosome condensation (RCC1) family protein
Location	chr5 : 15827374 .. 15827586 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAGAGAGAAAAAGAGAGGAAGGAGAAAGAAGAGGAAGAGAAAGCGAGAAGAGAAAGAAATAGAAGAAGAAAAGGAAGAAAGGAAAAGGCAAAAGAAAAGAGAGAAACAAGGCAAGAAAGATCAAGAAACAATTTCCTTGCTTATTTCCCCAAAAGAATTCAAGAAGTTTGCGAAGAAAGCTGAAGAGAAGCACGAGAAAGTTAAATAA

mRNA sequence

ATGCAAAGAGAGAAAAAGAGAGGAAGGAGAAAGAAGAGGAAGAGAAAGCGAGAAGAGAAAGAAATAGAAGAAGAAAAGGAAGAAAGGAAAAGGCAAAAGAAAAGAGAGAAACAAGGCAAGAAAGATCAAGAAACAATTTCCTTGCTTATTTCCCCAAAAGAATTCAAGAAGTTTGCGAAGAAAGCTGAAGAGAAGCACGAGAAAGTTAAATAA

Coding sequence (CDS)

ATGCAAAGAGAGAAAAAGAGAGGAAGGAGAAAGAAGAGGAAGAGAAAGCGAGAAGAGAAAGAAATAGAAGAAGAAAAGGAAGAAAGGAAAAGGCAAAAGAAAAGAGAGAAACAAGGCAAGAAAGATCAAGAAACAATTTCCTTGCTTATTTCCCCAAAAGAATTCAAGAAGTTTGCGAAGAAAGCTGAAGAGAAGCACGAGAAAGTTAAATAA

Protein sequence

MQREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFAKKAEEKHEKVK*

Homology

[Close]

BLAST of MELO3C008633 vs. Swiss-Prot
Match: Y5G8_ENCCU (UPF0329 protein ECU05_1680/ECU11_0050 OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU05_1680 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 27/71 (38.03%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 1   MQREKKRGRRKKRKRKREEKEIEE---EKEERKRQKKREKQGKKDQETISLLISPKEFKK 60
           M+++++  ++++ K+K EEK  EE   +KEE+K +KK++K+ KK+++        KE KK
Sbjct: 309 MEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKK 368

Query: 61  FAKKAEEKHEK 69
             KK E+K EK
Sbjct: 369 EEKKEEKKEEK 379

HSP 2 Score: 43.5 bits (101), Expect = 1.1e-03
Identity = 17/43 (39.53%), Postives = 32/43 (74.42%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQE 45
           +++KK  +++++K +++E++ EE+KEE+K +KK EK GK  +E
Sbjct: 344 KKKKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKSGKSLRE 386

[Close]

BLAST of MELO3C008633 vs. TrEMBL
Match: A0A158PKC6_ANGCS (Uncharacterized protein OS=Angiostrongylus costaricensis PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.5e-07
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRK--REEKEIEEEKEERKRQKKREKQG-KKDQETISLLISPKEFKKF 61
           ++E+K+G +K+ K++  REEK+ EE+KEE+K +KK EKQG KKD++        KE KK 
Sbjct: 105 KKEEKQGEKKEEKKEEVREEKKEEEKKEEKKEEKKEEKQGEKKDEKKDEKKEEKKEEKKE 164

Query: 62  AKKAEEKHEK 69
            KK E+K EK
Sbjct: 165 EKKEEKKEEK 174

[Close]

BLAST of MELO3C008633 vs. TrEMBL
Match: A0A158PKC6_ANGCS (Uncharacterized protein OS=Angiostrongylus costaricensis PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-05
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFAKK 61
           + EKK   ++++K +++E++ EE+KEE+K +KK EKQG+K +E        K+ +K  KK
Sbjct: 199 KEEKKEENKEEKKEEKKEEKKEEKKEEKKEEKKEEKQGEKKEEKKEENKEEKKDEKDEKK 258

Query: 62  AEEKHEK 69
            E+K EK
Sbjct: 259 DEKKDEK 265

HSP 2 Score: 52.8 bits (125), Expect = 2.0e-04
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1


Query: 2   QREKKRGRRKKRKR--KREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFA 61
           ++E+K+G +K  K+  K+EEK+ EE+KEE+K +KK EKQG+K  E        KE  K  
Sbjct: 138 KKEEKQGEKKDEKKDEKKEEKK-EEKKEEKKEEKKEEKQGEKQGEKKE---EKKEENKEE 197

Query: 62  KKAEEKHEK 69
           KK E K EK
Sbjct: 198 KKEENKEEK 202

HSP 3 Score: 48.1 bits (113), Expect = 5.0e-03
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 1


Query: 5   KKRGRRKKRKRKREEKEI--EEEKEERKRQKKREKQGKKDQETISLLISPK--EFKKFAK 64
           +K   +KK  +K E+KE   EE+KEE+  +KK EKQG+K +E    +   K  E KK  K
Sbjct: 75  RKADEKKKEGKKPEQKEDKKEEKKEEKPEEKKEEKQGEKKEEKKEEVREEKKEEEKKEEK 134

Query: 65  KAEEKHEK 69
           K E+K EK
Sbjct: 135 KEEKKEEK 142

HSP 4 Score: 47.0 bits (110), Expect = 1.1e-02
Identity = 24/68 (35.29%), Postives = 46/68 (67.65%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREK-QGKKDQETISLLISPKEFKKFAK 61
           ++E+K+G +K+ K++  ++E ++EK+E+K +KK EK + KKD+       + KE +K A+
Sbjct: 230 KKEEKQGEKKEEKKEENKEEKKDEKDEKKDEKKDEKEEDKKDERKDEKSDAKKEDEKQAE 289

Query: 62  KAEEKHEK 69
             E++ EK
Sbjct: 290 GKEKEDEK 297

HSP 5 Score: 47.0 bits (110), Expect = 1.1e-02
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 1


Query: 2   QREKKRGRRK-KRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFAK 61
           ++E+K+G ++ ++K +++E+  EE+KEE K +KK E + +K +E        KE KK  K
Sbjct: 170 KKEEKQGEKQGEKKEEKKEENKEEKKEENKEEKKEENKEEKKEE-------KKEEKKEEK 229

Query: 62  KAEEKHEK 69
           K E+K EK
Sbjct: 230 KEEKKEEK 230

HSP 6 Score: 57.8 bits (138), Expect = 6.4e-06
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFK--KFA 61
           +  KK+GRRK+RK++R+++  +E K+ERKR++K+EK+GKK +         KE K  K  
Sbjct: 40  KERKKKGRRKERKKERKKERKKERKKERKRERKKEKEGKKKRRKEKKKERKKERKKEKEG 99

Query: 62  KKAEEKHEKVK 71
           KK E K E+ K
Sbjct: 100 KKKEGKKERKK 110

[Close]

BLAST of MELO3C008633 vs. TrEMBL
Match: A0A0L8I3P4_OCTBM (Uncharacterized protein (Fragment) OS=Octopus bimaculoides GN=OCBIM_22036271mg PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.5e-04
Identity = 24/69 (34.78%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFAKK 61
           +R+K+R R +K++++ ++K  +E+K+ERK+++K+EK+GKK +         K+ +K  +K
Sbjct: 62  ERKKERKRERKKEKEGKKKRRKEKKKERKKERKKEKEGKKKEGKKERKKERKKRRKEGRK 121

Query: 62  AEEKHEKVK 71
            E K E+ K
Sbjct: 122 KERKEEERK 130

HSP 2 Score: 45.4 bits (106), Expect = 3.3e-02
Identity = 24/67 (35.82%), Postives = 42/67 (62.69%), Query Frame = 1


Query: 2  QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFAKK 61
          +REK+R + K+ K+KR +    E K+ERK++K+R+K+G++ +         K+ +K  +K
Sbjct: 13 EREKERKKEKEGKKKRRK----ERKKERKKKKERKKKGRRKERKKERKKERKKERKKERK 72

Query: 62 AEEKHEK 69
           E K EK
Sbjct: 73 RERKKEK 75

HSP 3 Score: 41.6 bits (96), Expect = 4.7e-01
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 1


Query: 16 KREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFAKKAEEKHEK 69
          +R E+E E E EER++++K+EK+GKK +         KE KK  KK +E+ +K
Sbjct: 1  QRREREKEREGEEREKERKKEKEGKKKRR--------KERKKERKKKKERKKK 45

HSP 4 Score: 30.0 bits (66), Expect = 1.4e+03
Identity = 18/58 (31.03%), Postives = 33/58 (56.90%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFA 60
           ++ +K GR+K+RK           +EERK++KK++++ K+    + +L     FK FA
Sbjct: 113 KKRRKEGRKKERK-----------EEERKKEKKKKERRKECYGIVRVL---PHFKTFA 156

[Close]

BLAST of MELO3C008633 vs. NCBI nr
Match: gi|944207621|gb|KQK74690.1| (hypothetical protein AAES_154774 [Amazona aestiva])

HSP 1 Score: 58.2 bits (139), Expect = 7.0e-06
Identity = 27/68 (39.71%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFAKK 61
           ++E+K+ R+K+RK++R+++  +E K+ERK++K+R+K+G+K +E        KE K+  KK
Sbjct: 163 KKERKKERKKERKKERKKERRKERKKERKKKKERKKEGRKRKEKKRKEKKRKEKKRKEKK 222

Query: 62  AEEKHEKV 70
            +EK EK+
Sbjct: 223 RKEKKEKI 230

[Close]

BLAST of MELO3C008633 vs. NCBI nr
Match: gi|918333261|gb|KOF96117.1| (hypothetical protein OCBIM_22036271mg, partial [Octopus bimaculoides])

HSP 1 Score: 57.8 bits (138), Expect = 9.1e-06
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFK--KFA 61
           +  KK+GRRK+RK++R+++  +E K+ERKR++K+EK+GKK +         KE K  K  
Sbjct: 40  KERKKKGRRKERKKERKKERKKERKKERKRERKKEKEGKKKRRKEKKKERKKERKKEKEG 99

Query: 62  KKAEEKHEKVK 71
           KK E K E+ K
Sbjct: 100 KKKEGKKERKK 110

[Close]

BLAST of MELO3C008633 vs. NCBI nr
Match: gi|918333261|gb|KOF96117.1| (hypothetical protein OCBIM_22036271mg, partial [Octopus bimaculoides])

HSP 1 Score: 52.0 bits (123), Expect = 5.0e-04
Identity = 24/69 (34.78%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFAKK 61
           +R+K+R R +K++++ ++K  +E+K+ERK+++K+EK+GKK +         K+ +K  +K
Sbjct: 62  ERKKERKRERKKEKEGKKKRRKEKKKERKKERKKEKEGKKKEGKKERKKERKKRRKEGRK 121

Query: 62  AEEKHEKVK 71
            E K E+ K
Sbjct: 122 KERKEEERK 130

HSP 2 Score: 45.4 bits (106), Expect = 4.7e-02
Identity = 24/67 (35.82%), Postives = 42/67 (62.69%), Query Frame = 1


Query: 2  QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFAKK 61
          +REK+R + K+ K+KR +    E K+ERK++K+R+K+G++ +         K+ +K  +K
Sbjct: 13 EREKERKKEKEGKKKRRK----ERKKERKKKKERKKKGRRKERKKERKKERKKERKKERK 72

Query: 62 AEEKHEK 69
           E K EK
Sbjct: 73 RERKKEK 75

HSP 3 Score: 41.6 bits (96), Expect = 6.8e-01
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 1


Query: 16 KREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFAKKAEEKHEK 69
          +R E+E E E EER++++K+EK+GKK +         KE KK  KK +E+ +K
Sbjct: 1  QRREREKEREGEEREKERKKEKEGKKKRR--------KERKKERKKKKERKKK 45

HSP 4 Score: 30.0 bits (66), Expect = 2.0e+03
Identity = 18/58 (31.03%), Postives = 33/58 (56.90%), Query Frame = 1


Query: 2   QREKKRGRRKKRKRKREEKEIEEEKEERKRQKKREKQGKKDQETISLLISPKEFKKFA 60
           ++ +K GR+K+RK           +EERK++KK++++ K+    + +L     FK FA
Sbjct: 113 KKRRKEGRKKERK-----------EEERKKEKKKKERRKECYGIVRVL---PHFKTFA 156

The following BLAST results are available for this feature:

BLAST of MELO3C008633 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5G8_ENCCU	1.8e-06	38.03	UPF0329 protein ECU05_1680/ECU11_0050 OS=Encephalitozoon cuniculi (strain GB-M1)...	[more]

BLAST of MELO3C008633 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A158PKC6_ANGCS	7.5e-07	48.57	Uncharacterized protein OS=Angiostrongylus costaricensis PE=4 SV=1	[more]
A0A158PKC6_ANGCS	5.4e-05	40.30	Uncharacterized protein OS=Angiostrongylus costaricensis PE=4 SV=1	[more]
A0A0L8I3P4_OCTBM	3.5e-04	34.78	Uncharacterized protein (Fragment) OS=Octopus bimaculoides GN=OCBIM_22036271mg P...	[more]

BLAST of MELO3C008633 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|944207621\|gb\|KQK74690.1\|	7.0e-06	39.71	hypothetical protein AAES_154774 [Amazona aestiva]	[more]
gi\|918333261\|gb\|KOF96117.1\|	9.1e-06	43.66	hypothetical protein OCBIM_22036271mg, partial [Octopus bimaculoides]	[more]
gi\|918333261\|gb\|KOF96117.1\|	5.0e-04	34.78	hypothetical protein OCBIM_22036271mg, partial [Octopus bimaculoides]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU66534	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008633T1	MELO3C008633T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU66534	MU66534	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 1..43 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008633	Cucumber (Gy14) v1	cgymeB321
MELO3C008633	Cucurbita maxima (Rimu)	cmameB178
MELO3C008633	Cucurbita maxima (Rimu)	cmameB739
MELO3C008633	Cucurbita moschata (Rifu)	cmomeB167
MELO3C008633	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008633	Wild cucumber (PI 183967)	cpimeB142
MELO3C008633	Cucumber (Chinese Long) v2	cumeB137
MELO3C008633	Watermelon (Charleston Gray)	mewcgB369
MELO3C008633	Watermelon (97103) v1	mewmB428
MELO3C008633	Cucurbita pepo (Zucchini)	cpemeB106
MELO3C008633	Cucurbita pepo (Zucchini)	cpemeB780
MELO3C008633	Bottle gourd (USVL1VR-Ls)	lsimeB117
MELO3C008633	Cucumber (Gy14) v2	cgybmeB125
MELO3C008633	Silver-seed gourd	carmeB0487
MELO3C008633	Cucumber (Chinese Long) v3	cucmeB144
MELO3C008633	Watermelon (97103) v2	mewmbB372
MELO3C008633	Wax gourd	mewgoB458