Cp4.1LG07g08120 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g08120
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	INO80 complex subunit C
Location	Cp4.1LG07 : 7294676 .. 7301808 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACGGTCGTCTTGATTATAACAGGTAGGAGAGTTTTCGGCCGGCCGCTAATGGAGTCGAGCAATGCGTAGGGTTTATGCTTCTATAGAGCTTTGTTTCTTTGAAATTTCTTCATAACCTTTGAATGTCGTAAAAGATTTCAGAAACCAGAAGGCGTTAATAGAAGTTGACGATGGAGCCGGAGGTGATAGAAGCCGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAGGCCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAAATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTGTAAGATTTCTCTCTTTCAGTTTTAATCATTTTGTCTCTTACAGTTTCTCTCATATTTGATTACACCGTGGTCTGTAAATTTATTTGTTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACACTTTATAAGGGTGTGGAAACCTCTCACTAGAAGACGCATTTTAAAAACCTTGAGGGAAAGTTTGAAAGGGAATATTTGCTAGCGGTGGGCTTGGGCCGTCGGGCGATGTGCCAGCTAGGAGGCTGAGCCCCAAAGGGGTGGATACAAGGCGGTGTGCCAGCAACGACGCTGGCCCCAAAGGGGGTGAATTGAGGGTTCCACATCGATTGGAGAAAAGAACGAGTGTCAGTGAGGACGCTAAGACCTCGAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAAGGTGTGGAAACCTCTCCCTAGCCGCCATTGTTTATAAGGGTGTGGAAACCTCTCTTTAGCAGACCCTGTTTATAAGGGGGAGGAAACCTCTCCCTAACAGACGCTGTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCTTTTTAAAACCTTGAGGGGAAGCCCGAAAGGAAAAGTCTAAAGAGAACAATATCTGCTACTGGTGGGCTTGGGCTGTTACATTTTTGTCGTTGCTTTGATGTGTGGACTGTGATGTTTTTGTTTGATAATTATTTAAGAGGTTAAATGTATGATTTAGTTCTTGATGTTGGAGTGTTTTTTAGATTTAGTTTATGTTCTTTAAAGCTTTCAATTTAGTATGTTGATATTGGTTGATTATAAACTCATATGGACATAATATTGAATTGGTAGAAAGTTAAGAGGGGAAAAACAAGGTCATCTAAGACGAGCAATATCAAAGTTCTACCAATTCTTAGAAGTTTGAAGCTCAGTCGATTTGGACATTTTCTGGAAACTTTTGAACTGTCTTTGGGCACAATATTTTCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACACTGGGCGATGTGCCAGCGAGGAGATTGAGCCCCGAAGGGGGGTGGACACGAGACGGTGTGCCTGCGAGGAACTTGAGCCCCGAAGGGAGGTGGACATGAGGCGGTGTGCCAGCAAGGATGCTGGGCTCGAAAGGGGAATAGATTGGGGGTCCTTGAAGTAGAGTTCGATTATTTTAGATAGCCATCTGTTGGGATTCTCACCTAAAATGATTGGCATCTCTACTTTGTTGAAGTTACTCCAATCTAGATGCTCATTATTTTTTTCTTCTCGCGGTTCTCTCCTTTCTGTATTCTCGAGGTCTTCCGTGGTTTGTGTACTCTCCCTTTTGTGTGTTTCTCCTCTTCTACCAACTGTTTCTCCTACCCTAAGTACGCCATTGATTTCTGTTTTATTATGGGTTATTTGAGAATATTATAGCTTTAGTTTACTGTCGCGCGATGTGGTTAGTACCGTCACCTCGACACATTTTTTGCGAGGTGAAAAAGTAACGGCCCAAGTTCACCGTTAGCAGATAATGTCCTCTTTGGGCTTTTCCTTTCGGGCTTTCTCTCAAGGTTGTTTTTAAAACGCGTATGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCATTCCCCTCTCCAACCGATGTGGGATCTCACATCACTTTTTTTATTCGTAGGAGTCTTTGCAATTCCTCATTCATTTCTTGCATTTTCTTCTACATGGTCTCATTCTTTCCTCCCATTTTCTTTGAGCCATTTTGATCTCCTACTCGGTTCGAAATGTGTGGACACCAAATTTTGAGGAACTAACTATGGTACGTCTGTGCGCCCAACGGTGCAATAGAGCACCATACTTGAATAACCCTTCCAAATTCAGGAAGGCTAGCTACTCTCATACCTAAACATTTTGTAAAACCATAAACTGTCTTGCTTCATGCTCATGACATTTATGGCTACATATGCATACCTATACTGTGTTAATGGCTACATATACATATACATACCTCAAGGAGGCAGTTTGCTGTTGATCAATAGGATTCCAGTCAAGATCATNTGCCAGCGAGGAGATTGAGCCCCGAAGGGGGGTGGACACGAGACGGTGTGCCTGCGAGGAACTTGAGCCCCGAAGGGAGGTGGACATGAGGCGGTGTGCCAGCAAGGATGCTGGGCTCGAAAGGGGAATAGATTGGGGGTCCTTGAAGTAGAGTTCGATTATTTTAGATAGCCATCTGTTGGGATTCTCACCTAAAATGATTGGCATCTCTACTTTGTTGAAGTTACTCCAATCTAGATGCTCATTATTTTTTTCTTCTCGCGGTTCTCTCCTTTCTGTATTCTCGAGGTCTTCCGTGGTTTGTGTACTCTCCCTTTTGTGTGTTTCTCCTCTTCTACCAACTGTTTCTCCTACCCTAAGTACGCCATTGATTTCTGTTTTATTATGGGTTATTTGAGAATATTATAGCTTTAGTTTACTGTCGCGCGATGTGGTTAGTACCGTCACCTCGACACATTTTTTGCGAGGTGAAAAAGTAACGGCCCAAGTTCACCGTTAGCAGATAATGTCCTCTTTGGGCTTTTCCTTTCGGGCTTTCTCTCAAGGTTGTTTTTAAAACGCGTATGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCATTCCCCTCTCCAACCGATGTGGGATCTCACATCACTTTTTTTATTCGTAGGAGTCTTTGCAATTCCTCATTCATTTCTTGCATTTTCTTCTACATGGTCTCATTCTTTCCTCCCATTTTCTTTGAGCCATTTTGATCTCCTACTCGGTTCGAAATGTGTGGACACCAAATTTTGAGGAACTAACTATGGTACGTCTGTGCGCCCAACGGTGCAATAGAGCACCATACTTGAATAACCCTTCCAAATTCAGGAAGGCTAGCTACTCTCATACCTAAACATTTTGTAAAACCATAAACTGTCTTGCTTCATGCTCATGACATTTATGGCTACATATGCATACCTATACTGTGTTAATGGCTACATATACATATACATACCTCAAGGAGGCAGTTTGCTGTTGATCAATAGGATTCCAGTCAAGATCATGGGGAAAGTCGTAGAGGGCACTGTCCTTTGTGTATAAGGACGTGTAAAAGGACACAAATTCTGATACGATTTCTTCTTCGTTTACTAAACAACTTCTGCCTTGTGTGGTTAGAATTTCCATGATGGTATTCTTTCGTTTCTTTAGCCAATCTGGAGTTTATGTCACCTTCCTCTGACCATCGTTTTTTACATTTTTATCTCCAAGATTGCTCTTCCTTTACTGCCAACGAAATAAGTTCTGCTTTCATGAGCTTTTTCCGTGTGTTGAACTAGTGTGATGGAGCTAGTTTCCTCCCTCTGATCAAGGAGGCACCAACCCAGTAAGAGAGAGCAATAAATGAGCGGTTTTTGGGTCTCTTCACGAGTATTGATGTTTTCATTGGCAATAATTCATTAAAAAACTAATAGTCTTGGAATTTTATACTTTATACCCCTTATTGATAGTTTTGAATTTTATACTTCATGAGTATTAATTGTTCCTTTTATTCGTTTTTCAGATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGTATGTGACTTTTGGTAGTTTATGACTCAACATTGCTTTCTAAACTCGAACAACAATTAATTTCTTTGTTTTCTTCAAAAAATAAAAAAAAATAAAAAATAAAAAAAATAAAAAAATAAAAAGAACCCTTTTTGAAATCACTTCAGGAAGTGACGTTGTTATTATTCAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTAATTTCTGAAGTTTCTTTTTATAAGATCACTTCATCTTTAATCATTACCGTTGTCACCGTCTTTGAACGTGAAATTTAGATGATGTCACATGCNCGTGTAAAAGGACACAAATTCTGATACGATTTCTTCTTCGTTTACTAAACAACTTCTGCCTTGTGTGGTTAGAATTTCCATGATGGTATTCTTTCGTTTCTTTAGCCAATCTGGAGTTTATGTCACCTTCCTCTGACCATCGTTTTTTACATTTTTATCTCCAAGATTGCTCTTCCTTTACTGCCAACGAAATAAGTTCTGCTTTCATGAGCTTTTTCCGTGTGTTGAACTAGTGTGATGGAGCTAGTTTCCTCCCTCTGATCAAGGAGGCACCAACCCAGTAAGAGAGAGCAATAAATGAGCGGTTTTTGGGTCTCTTCACGAGTATTGATGTTTTCATTGGCAATAATTCATTAAAAAACTAATAGTCTTGGAATTTTATACTTTATACCCCTTATTGATAGTTTTGAATTTTATACTTCATGAGTATTAATTGTTCCTTTTATTCGTTTTTCAGATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGTATGTGACTTTTGGTAGTTTATGACTCAACATTGCTTTCTAAACTCGAACAACAATTAATTTCTTTGTTTTCTTCAAAAAATAAAAAAAAATAAAAAATAAAAAAAATAAAAAAATAAAAAGAACCCTTTTTGAAATCACTTCAGGAAGTGACGTTGTTATTATTCAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTAATTTCTGAAGTTTCTTTTTATAAGATCACTTCATCTTTAATCATTACCGTTGTCACCGTCTTTGAACGTGAAATTTAGATGATGTCACATGCCCTGGTAGCTAGTTGAACACATTAAATTTCATTCAGTTTTGAGTAGTCTTTTCCTAAATTACTTGAAAGTTGCAGTTTGTACTATATATAAGGGATTCCTAGATTTAAGCTGAAAAAACAATCACTTATTGACTGCCATCTTCTTTCATCTATGCGGATCCCAAAGAGGCGGATTCCATTTTTTTAATCTGATCTAGCTAAAGATTCGAGGTATTAAGAATTCAATGGTGAAGTGATGAGGAGTTTTTGCCGGTATAAACTATGCATCCGGGCACTATATGTGAGATCCTACATCGGTTGGGGAGGAGAATGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAGAAAACCTTGAGGGAAACCCCGAAAGGGAAAGTCCAAAGAGGACAATATTTGCTAGCCGTGGGCTTGAGTCGTTACAAATGGTATCAGAGTCAGACACCGGGCGATGTGCCAGCGAGGAGGCTGAGCTCCAAAGGGGGTGGACACGAGGTGGTGTGCCAGCAAGGACACTGGGCTCTGAAGGGGGGTGGATGAGGGGTCCCACATCGACTGGAGAAGGGAACGAGTGCCAGTGAGGATGCTGGGCCTCGAAGGGGGTGGGTTGTGAGATCTCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAAATGCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAAGGAAAGCCCAAAGAGGACAATATCTGCTAGTAGTGGGCTTGAGCCGTTACAAATAATATCAGAGATAGACATCGGACGATGTGCTAGCGAGGAGGCTGAGCTCTGAAGGCGGGTGGACACAAGGCGGTGTGCTAGCAAGGATGCTGAGCCCCAAAAGGGGGTAGATTGTAGGGTCCCACATCGATTGGAGAAGGAAACGAGTGCCAGCGATGACGCTGAGCCCCGAAAGGAGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGTACGAAACATTCTTTATAAGGGTGTGAAAACCTCTTCTAGCATACGCATTTTAAAAACTTTGAGGGAAAGTCCGAAGAGGACAATATCTGCTAACGGTGTGCTTGAGCCGTTAAACCATACACCAACTAGTGCCCAAATAACTTTTAAGGAATCGATATGAATATTGGTCTCAAAACCCCACGCAGTTCTATAGTTGATGTGTTCGATATTCAACCAATAATCTAGGCTGTTTCTTTGTTTTGTTTCATAAGTAGAAATCATGTCACGTCGAGCCCTGAAAAGCATCATATTATTTAGTGCTATGAATGGTTCTGAAATACTGAGGTTTCATTAGGACAACTTCCTGCTTAACTGCTTCTTGGAGTTTTATCTCACAAGTTCTATGTTTGGCTGAGTACTTCAATCCGATGCATCTAACTCTTACAGGTGAAGAGATACTGCTTTTCTATTGCCGATTAGCTCGGTGTCGAGCGAGCCCTCCATCTCGTGGCAGAAAATGCAGTGTGAATACTTAAAATGTATCATTTGTGTATTGATTCAATCATTTTGTGTATTAAATGGTCTTGGAATACATTTTATGTTTGCCTTTGGAACTATTAGCCAAAGTTGATTCATTTGGTTAAAACTCTCCAAGCTGAAAACATCCCCTAATGGGATTGCAGTTGAAGAAAATTTAAGGCTTAAAACTCGTTTGGTTCTATACCTCGAATCTTGAATGATTTCTATGTACGGTTGATATCGGTAACTGAATAATGATGTCACGTTTATTGTACAAATATTGTTTGATCATGCATGATTCGATGAACAAATGAC

mRNA sequence

TCACGGTCGTCTTGATTATAACAGATTTCAGAAACCAGAAGGCGTTAATAGAAGTTGACGATGGAGCCGGAGGTGATAGAAGCCGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAGGCCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAAATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTGAAGAGATACTGCTTTTCTATTGCCGATTAGCTCGGTGTCGAGCGAGCCCTCCATCTCGTGGCAGAAAATGCAGTGTGAATACTTAAAATGTATCATTTGTGTATTGATTCAATCATTTTGTGTATTAAATGGTCTTGGAATACATTTTATGTTTGCCTTTGGAACTATTAGCCAAAGTTGATTCATTTGGTTAAAACTCTCCAAGCTGAAAACATCCCCTAATGGGATTGCAGTTGAAGAAAATTTAAGGCTTAAAACTCGTTTGGTTCTATACCTCGAATCTTGAATGATTTCTATGTACGGTTGATATCGGTAACTGAATAATGATGTCACGTTTATTGTACAAATATTGTTTGATCATGCATGATTCGATGAACAAATGAC

Coding sequence (CDS)

ATGGAGCCGGAGGTGATAGAAGCCGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAGGCCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAAATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTGA

Protein sequence

MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

Homology

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BLAST of Cp4.1LG07g08120 vs. Swiss-Prot
Match: IN80C_MOUSE (INO80 complex subunit C OS=Mus musculus GN=Ino80c PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.6e-12
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 1


Query: 33  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYESPPSMHPCKKI 92
           + R WK+LKQIL AE    +  ++PNY +I+                  +PPS  P KK 
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSID------------------APPSFKPAKKY 159

Query: 93  CDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 142
            DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Sbjct: 160 SDISGLLANYTDPQSKLRFSTVEEFSYIRRLPSDVVTGYLALRKATSIV 190

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BLAST of Cp4.1LG07g08120 vs. Swiss-Prot
Match: IN80C_RAT (INO80 complex subunit C OS=Rattus norvegicus GN=Ino80c PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 1


Query: 33  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYESPPSMHPCKKI 92
           + R WK+LKQIL AE    +  ++PNY +I+                  +PPS  P KK 
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSID------------------APPSFKPAKKY 159

Query: 93  CDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 142
            D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A  ++
Sbjct: 160 SDVSGLLANYTDPQSKLRFSTVEEFSYIRRLPSDVVTGYLTLRKATSIV 190

[Close]

BLAST of Cp4.1LG07g08120 vs. Swiss-Prot
Match: IN80C_HUMAN (INO80 complex subunit C OS=Homo sapiens GN=INO80C PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 1


Query: 33  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYESPPSMHPCKKI 92
           + R WK+LKQIL +E    +  ++PNY +I+                  +PPS  P KK 
Sbjct: 101 KNRTWKNLKQILASERALPWQLNDPNYFSID------------------APPSFKPAKKY 160

Query: 93  CDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 142
            D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Sbjct: 161 SDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIV 191

[Close]

BLAST of Cp4.1LG07g08120 vs. Swiss-Prot
Match: IES6_SCHPO (Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ies6 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-10
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 1


Query: 28  PKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYESPPSMH 87
           P  +++ R  ++L+QI+Q +   N    EP+  +  S                E+PPS+ 
Sbjct: 22  PNYKAQPRRNRNLRQIIQNDPVQN----EPSKFSYSS---------------IEAPPSVL 81

Query: 88  PCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR 143
           P  K CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ VVL+
Sbjct: 82  PQPKYCDVTGLLAIYTDPKTRLRYHNKEIYGLIRELPSGADQEYLKLRSSDVVLK 117

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BLAST of Cp4.1LG07g08120 vs. TrEMBL
Match: A0A0A0LJN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077540 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-60
Identity = 120/142 (84.51%), Postives = 121/142 (85.21%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYV
Sbjct: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVI 120
           NI                  ESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVI
Sbjct: 61  NI------------------ESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVI 120

Query: 121 RSLPNEYVQRYLAMRNAAVVLR 143
           RSLPNEYVQRYLAMRNAAVVLR
Sbjct: 121 RSLPNEYVQRYLAMRNAAVVLR 124

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BLAST of Cp4.1LG07g08120 vs. TrEMBL
Match: M5VTH2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024988mg PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.1e-57
Identity = 111/142 (78.17%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           MEPEV+ AELVLPTHL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY  +EPNYV
Sbjct: 121 MEPEVVHAELVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPNEPNYV 180

Query: 61  NIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVI 120
           NI                  ESPPSMHPCK+ICDITGYEAPYYDPRT LRYANADIFK+I
Sbjct: 181 NI------------------ESPPSMHPCKRICDITGYEAPYYDPRTGLRYANADIFKLI 240

Query: 121 RSLPNEYVQRYLAMRNAAVVLR 143
           RSLPNEYVQRYLA+RNAAVVL+
Sbjct: 241 RSLPNEYVQRYLALRNAAVVLK 244

[Close]

BLAST of Cp4.1LG07g08120 vs. TrEMBL
Match: W9QBU4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006062 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.0e-56
Identity = 111/145 (76.55%), Postives = 122/145 (84.14%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           ME EVI+AELVLPTHL+FK+IQMYEKYPKGQSRGRHWKHLKQI+QAENY NY  DEPNYV
Sbjct: 1   MEAEVIQAELVLPTHLSFKKIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYESPPS---MHPCKKICDITGYEAPYYDPRTTLRYANADIF 120
           NIESPPSMHPCKKICDITGYE+      MH           +APY DPRT LRYANA++F
Sbjct: 61  NIESPPSMHPCKKICDITGYEASIETLYMH----------LQAPYSDPRTNLRYANAEVF 120

Query: 121 KVIRSLPNEYVQRYLAMRNAAVVLR 143
           K+IRSLPNEYVQRYLA+RNAAVVL+
Sbjct: 121 KIIRSLPNEYVQRYLAVRNAAVVLK 135

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BLAST of Cp4.1LG07g08120 vs. TrEMBL
Match: A0A067FL65_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033229mg PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.3e-55
Identity = 108/142 (76.06%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           ME EVIEAELVLPT+++FKRIQMYEKYPKGQSRGRHWKHLKQILQAENY NY  DEPNYV
Sbjct: 1   MEAEVIEAELVLPTYMSFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVI 120
           NI                  ESPPSMHPCK+ICDITG+EAPYYDPRT LRYANA++FK++
Sbjct: 61  NI------------------ESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLV 120

Query: 121 RSLPNEYVQRYLAMRNAAVVLR 143
           RSLPNEYVQRYLA+RNAAVVL+
Sbjct: 121 RSLPNEYVQRYLALRNAAVVLK 124

[Close]

BLAST of Cp4.1LG07g08120 vs. TrEMBL
Match: V4SAC9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029589mg PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.3e-55
Identity = 108/142 (76.06%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           ME EVIEAELVLPT+++FKRIQMYEKYPKGQSRGRHWKHLKQILQAENY NY  DEPNYV
Sbjct: 1   MEAEVIEAELVLPTYMSFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVI 120
           NI                  ESPPSMHPCK+ICDITG+EAPYYDPRT LRYANA++FK++
Sbjct: 61  NI------------------ESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLV 120

Query: 121 RSLPNEYVQRYLAMRNAAVVLR 143
           RSLPNEYVQRYLA+RNAAVVL+
Sbjct: 121 RSLPNEYVQRYLALRNAAVVLK 124

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BLAST of Cp4.1LG07g08120 vs. TAIR10
Match: AT4G38495.1 (AT4G38495.1 YL1 nuclear, C-terminal (InterPro:IPR013272))

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-39
Identity = 79/142 (55.63%), Postives = 100/142 (70.42%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           ME E++EA++V+ + L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +   D P YV
Sbjct: 1   MERELMEADIVVASRLSFKKKQAYEKYPKAQSSSRRWKHLKQILQAENFPDLPPDLPTYV 60

Query: 61  NIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVI 120
           NIESPPS  PCK                  ++CDITGYEAPY DPRT LRYANA +F+ +
Sbjct: 61  NIESPPSTQPCK------------------RLCDITGYEAPYVDPRTNLRYANAHVFQTV 120

Query: 121 RSLPNEYVQRYLAMRNAAVVLR 143
           RSL ++ V +YL++RNAAVVL+
Sbjct: 121 RSLSSDQVHQYLSIRNAAVVLK 124

[Close]

BLAST of Cp4.1LG07g08120 vs. NCBI nr
Match: gi|659082319|ref|XP_008441777.1| (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 120/142 (84.51%), Postives = 122/142 (85.92%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYS DEPNYV
Sbjct: 1   MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVI 120
           NI                  ESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVI
Sbjct: 61  NI------------------ESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVI 120

Query: 121 RSLPNEYVQRYLAMRNAAVVLR 143
           RSLPNEYVQRYLAMRNAAVVLR
Sbjct: 121 RSLPNEYVQRYLAMRNAAVVLR 124

[Close]

BLAST of Cp4.1LG07g08120 vs. NCBI nr
Match: gi|449470210|ref|XP_004152811.1| (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.5e-60
Identity = 120/142 (84.51%), Postives = 121/142 (85.21%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYV
Sbjct: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVI 120
           NI                  ESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVI
Sbjct: 61  NI------------------ESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVI 120

Query: 121 RSLPNEYVQRYLAMRNAAVVLR 143
           RSLPNEYVQRYLAMRNAAVVLR
Sbjct: 121 RSLPNEYVQRYLAMRNAAVVLR 124

[Close]

BLAST of Cp4.1LG07g08120 vs. NCBI nr
Match: gi|694380660|ref|XP_009366445.1| (PREDICTED: chromatin-remodeling complex subunit ies6 [Pyrus x bretschneideri])

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 112/142 (78.87%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           MEPEV++AELVLPTHL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY  DEPNYV
Sbjct: 1   MEPEVVDAELVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVI 120
           NI                  ESPPSMHPCKKICDITGYEAPYYDPRT LRYAN DIFK+I
Sbjct: 61  NI------------------ESPPSMHPCKKICDITGYEAPYYDPRTNLRYANTDIFKLI 120

Query: 121 RSLPNEYVQRYLAMRNAAVVLR 143
           RSLPNEYVQRYLA+RNAAVVL+
Sbjct: 121 RSLPNEYVQRYLALRNAAVVLK 124

[Close]

BLAST of Cp4.1LG07g08120 vs. NCBI nr
Match: gi|645270470|ref|XP_008240470.1| (PREDICTED: chromatin-remodeling complex subunit ies6 [Prunus mume])

HSP 1 Score: 228.0 bits (580), Expect = 1.0e-56
Identity = 111/142 (78.17%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           MEPEV+ AELVLPTHL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY  +EPNYV
Sbjct: 1   MEPEVVHAELVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPNEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVI 120
           NI                  ESPPSMHPCK+ICDITGYEAPYYDPRT LRYANADIFK+I
Sbjct: 61  NI------------------ESPPSMHPCKRICDITGYEAPYYDPRTGLRYANADIFKLI 120

Query: 121 RSLPNEYVQRYLAMRNAAVVLR 143
           RSLPNEYVQRYLA+RNAAVVL+
Sbjct: 121 RSLPNEYVQRYLALRNAAVVLK 124

[Close]

BLAST of Cp4.1LG07g08120 vs. NCBI nr
Match: gi|1009150865|ref|XP_015893252.1| (PREDICTED: chromatin-remodeling complex subunit ies6 [Ziziphus jujuba])

HSP 1 Score: 228.0 bits (580), Expect = 1.0e-56
Identity = 110/142 (77.46%), Postives = 118/142 (83.10%), Query Frame = 1


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60
           MEPEVI+AE+VLPTHL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY  DEPNYV
Sbjct: 1   MEPEVIQAEMVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPNYV 60

Query: 61  NIESPPSMHPCKKICDITGYESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVI 120
           NI                  ESPPSMHPCK+ICDITGYEAPYYDPRT LRYAN D+FK I
Sbjct: 61  NI------------------ESPPSMHPCKRICDITGYEAPYYDPRTNLRYANTDVFKQI 120

Query: 121 RSLPNEYVQRYLAMRNAAVVLR 143
           RSLPNEYVQRYLA+RNAAVVL+
Sbjct: 121 RSLPNEYVQRYLALRNAAVVLK 124

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g08120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IN80C_MOUSE	7.6e-12	36.70	INO80 complex subunit C OS=Mus musculus GN=Ino80c PE=1 SV=1	[more]
IN80C_RAT	2.9e-11	34.86	INO80 complex subunit C OS=Rattus norvegicus GN=Ino80c PE=2 SV=1	[more]
IN80C_HUMAN	2.9e-11	34.86	INO80 complex subunit C OS=Homo sapiens GN=INO80C PE=1 SV=1	[more]
IES6_SCHPO	5.5e-10	35.65	Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 9...	[more]

BLAST of Cp4.1LG07g08120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJN6_CUCSA	1.1e-60	84.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077540 PE=4 SV=1	[more]
M5VTH2_PRUPE	7.1e-57	78.17	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024988mg PE=4 S...	[more]
W9QBU4_9ROSA	6.0e-56	76.55	Uncharacterized protein OS=Morus notabilis GN=L484_006062 PE=4 SV=1	[more]
A0A067FL65_CITSI	1.3e-55	76.06	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033229mg PE=4 SV=1	[more]
V4SAC9_9ROSI	1.3e-55	76.06	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029589mg PE=4 SV=1	[more]

BLAST of Cp4.1LG07g08120 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38495.1	2.1e-39	55.63	YL1 nuclear, C-terminal (InterPro:IPR013272)	[more]

BLAST of Cp4.1LG07g08120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082319\|ref\|XP_008441777.1\|	1.2e-60	84.51	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]	[more]
gi\|449470210\|ref\|XP_004152811.1\|	1.5e-60	84.51	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus]	[more]
gi\|694380660\|ref\|XP_009366445.1\|	1.2e-57	78.87	PREDICTED: chromatin-remodeling complex subunit ies6 [Pyrus x bretschneideri]	[more]
gi\|645270470\|ref\|XP_008240470.1\|	1.0e-56	78.17	PREDICTED: chromatin-remodeling complex subunit ies6 [Prunus mume]	[more]
gi\|1009150865\|ref\|XP_015893252.1\|	1.0e-56	77.46	PREDICTED: chromatin-remodeling complex subunit ies6 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013272	Vps72/YL1_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0031011	Ino80 complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g08120.1	Cp4.1LG07g08120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013272	Vps72/YL1, C-terminal	PFAM	PF08265	YL1_C	coord: 92..120 score: 3.6
IPR013272	Vps72/YL1, C-terminal	SMART	SM00993	YL1_C_2	coord: 91..120 score: 6.3
None	No IPR available	PANTHER	PTHR31200	FAMILY NOT NAMED	coord: 1..70 score: 1.4E-57coord: 89..142 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g08120	Cucsa.178270	Cucumber (Gy14) v1	cgycpeB0492
Cp4.1LG07g08120	CmaCh12G009770	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g08120	CmoCh12G009800	Cucurbita moschata (Rifu)	cmocpeB175
Cp4.1LG07g08120	Cla007883	Watermelon (97103) v1	cpewmB811
Cp4.1LG07g08120	Csa2G077540	Cucumber (Chinese Long) v2	cpecuB811
Cp4.1LG07g08120	MELO3C008634	Melon (DHL92) v3.5.1	cpemeB780
Cp4.1LG07g08120	ClCG11G010360	Watermelon (Charleston Gray)	cpewcgB723
Cp4.1LG07g08120	CSPI02G07560	Wild cucumber (PI 183967)	cpecpiB812
Cp4.1LG07g08120	Lsi11G009020	Bottle gourd (USVL1VR-Ls)	cpelsiB654
Cp4.1LG07g08120	MELO3C008634.2	Melon (DHL92) v3.6.1	cpemedB916
Cp4.1LG07g08120	CsaV3_2G009990	Cucumber (Chinese Long) v3	cpecucB1005
Cp4.1LG07g08120	Bhi06G000932	Wax gourd	cpewgoB1016
Cp4.1LG07g08120	CsGy2G007800	Cucumber (Gy14) v2	cgybcpeB261
Cp4.1LG07g08120	Carg23460	Silver-seed gourd	carcpeB0676

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g08120	Melon (DHL92) v3.6.1	cpemedB911
Cp4.1LG07g08120	Melon (DHL92) v3.6.1	cpemedB913
Cp4.1LG07g08120	Silver-seed gourd	carcpeB0238
Cp4.1LG07g08120	Cucurbita pepo (Zucchini)	cpecpeB142
Cp4.1LG07g08120	Cucurbita maxima (Rimu)	cmacpeB790
Cp4.1LG07g08120	Cucurbita moschata (Rifu)	cmocpeB743
Cp4.1LG07g08120	Melon (DHL92) v3.5.1	cpemeB775