Bhi06G000932 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G000932
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	chromatin-remodeling complex subunit ies6
Location	chr6 : 29435688 .. 29436396 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGTTTGAAACTTTTGGTAGTTTATAACTCAGCTTTGCTTTCTAAACTAGAATAGCAATGAATTACGGATTCCCTTCTTTATAGCTCATGATTTTTGTAATGGTTCTAGAGTATAATGAATCTGAACTACTGATGTATAGAGTGAATTGCATGCATTAGCTTTGCTTTCAGCCCTAACCATATTAATTTCTCTGTCTATTTTCGTAGTATTTTAAGAAATACCACTCTTGTTTTTCTATATTTTCACCTAAATATTTTCAAGTAATTAATTAATTATGTACATTTGTCCAAACCTCTTTGATTTTTTTTTTTTGCTTGTCTGCAATCAAAATTTCTTGCGGATATCACGTCATTCTAAACTTGTTGAGAGGCATCGTGACTTAAACATTAACAAATTTTTTTATTAGGTATAATACAAATAAGAAGTAAAAAACAGTTATTACCCTTAGCTCTGGTCGTGTCTTTACAAGACCTTTCTTTGTTTTCACCCAAATAACCGTTTGATTTCACTTCAGTAAGTCTCGACGTTGTTATTATTCAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAACGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTTCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAG

mRNA sequence

ATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAACGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTTCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAG

Coding sequence (CDS)

ATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAACGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTTCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAG

Protein sequence

MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Homology

[Close]

BLAST of Bhi06G000932 vs. Swiss-Prot
Match: sp|Q9UTE8|IES6_SCHPO (Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ies6 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-07
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 3   PCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           P  + CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ VVL
Sbjct: 63  PQPKYCDVTGLLAIYTDPKTRLRYHNKEIYGLIRELPSGADQEYLKLRSSDVVL 116

[Close]

BLAST of Bhi06G000932 vs. TAIR10
Match: AT4G38495.1 (YL1 nuclear, C-terminal (InterPro:IPR013272))

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-18
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 3   PCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           PCKR+CDITGYEAPY DPRT LRYANA +F+ +RSL ++ V +YL++RNAAVVL
Sbjct: 70  PCKRLCDITGYEAPYVDPRTNLRYANAHVFQTVRSLSSDQVHQYLSIRNAAVVL 123

[Close]

BLAST of Bhi06G000932 vs. TAIR10
Match: AT2G36740.1 (sequence-specific DNA binding transcription factors;DNA binding;DNA binding)

HSP 1 Score: 42.0 bits (97), Expect = 1.4e-04
Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 0


Query: 2   HPCKRICDITGYEAPYYDPRTTLRYANADIFKVIR 37
           +P K +C ITG  A Y DP+T L YA  D FK IR
Sbjct: 265 YPEKAVCVITGLPAKYRDPKTGLPYATRDAFKAIR 299

[Close]

BLAST of Bhi06G000932 vs. TrEMBL
Match: tr|A0A1S3B479|A0A1S3B479_CUCME (INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.8e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 123

[Close]

BLAST of Bhi06G000932 vs. TrEMBL
Match: tr|A0A0A0LJN6|A0A0A0LJN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.8e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 123

[Close]

BLAST of Bhi06G000932 vs. TrEMBL
Match: tr|A0A251N6I8|A0A251N6I8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G004000 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-23
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRT LRYANADIFK+IRSLPNEYVQRYLA+RNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTGLRYANADIFKLIRSLPNEYVQRYLALRNAAVVL 123

[Close]

BLAST of Bhi06G000932 vs. TrEMBL
Match: tr|M5VTH2|M5VTH2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa024988mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-23
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRT LRYANADIFK+IRSLPNEYVQRYLA+RNAAVVL
Sbjct: 188 MHPCKRICDITGYEAPYYDPRTGLRYANADIFKLIRSLPNEYVQRYLALRNAAVVL 243

[Close]

BLAST of Bhi06G000932 vs. TrEMBL
Match: tr|I3SJK2|I3SJK2_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-23
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRTTLRYAN D+FK+IR+LPN+YVQRYLA+RNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTTLRYANTDVFKIIRALPNDYVQRYLALRNAAVVL 123

[Close]

BLAST of Bhi06G000932 vs. NCBI nr
Match: XP_004152811.1 (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus] >XP_011649021.1 PREDICTED: INO80 complex subunit C isoform X2 [Cucumis sativus] >KGN61299.1 hypothetical protein Csa_2G077540 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 123

[Close]

BLAST of Bhi06G000932 vs. NCBI nr
Match: XP_008441777.1 (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo] >XP_008441778.1 PREDICTED: INO80 complex subunit C isoform X2 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 123

[Close]

BLAST of Bhi06G000932 vs. NCBI nr
Match: XP_022937916.1 (INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937917.1 INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937918.1 INO80 complex subunit C isoform X2 [Cucurbita moschata] >XP_022966011.1 INO80 complex subunit C isoform X1 [Cucurbita maxima] >XP_022966012.1 INO80 complex subunit C isoform X1 [Cucurbita maxima] >XP_022966013.1 INO80 complex subunit C isoform X2 [Cucurbita maxima] >XP_023536867.1 INO80 complex subunit C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 68  MHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 123

[Close]

BLAST of Bhi06G000932 vs. NCBI nr
Match: XP_023537972.1 (chromatin-remodeling complex subunit ies6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
          MHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 12 MHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 67

[Close]

BLAST of Bhi06G000932 vs. NCBI nr
Match: XP_022144563.1 (INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144565.1 INO80 complex subunit C isoform X2 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-24
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCK+ICDITGYEAPYYDPRTTLRYANAD+FKVIRSLPNEYVQRYLAMRNAAV+L
Sbjct: 68  MHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAAVIL 123

The following BLAST results are available for this feature:

BLAST of Bhi06G000932 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9UTE8\|IES6_SCHPO	3.0e-07	48.15	Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 9...	[more]

BLAST of Bhi06G000932 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38495.1	1.8e-18	70.37	YL1 nuclear, C-terminal (InterPro:IPR013272)	[more]
AT2G36740.1	1.4e-04	54.29	sequence-specific DNA binding transcription factors;DNA binding;DNA binding	[more]

BLAST of Bhi06G000932 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B479\|A0A1S3B479_CUCME	6.8e-25	100.00	INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 ...	[more]
tr\|A0A0A0LJN6\|A0A0A0LJN6_CUCSA	6.8e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 SV=1	[more]
tr\|A0A251N6I8\|A0A251N6I8_PRUPE	2.2e-23	94.64	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G004000 PE=4 SV=1	[more]
tr\|M5VTH2\|M5VTH2_PRUPE	2.2e-23	94.64	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa024988m...	[more]
tr\|I3SJK2\|I3SJK2_LOTJA	3.7e-23	89.29	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]

BLAST of Bhi06G000932 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152811.1	1.0e-24	100.00	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus] >XP_011649021.1 ...	[more]
XP_008441777.1	1.0e-24	100.00	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo] >XP_008441778.1 PRE...	[more]
XP_022937916.1	2.3e-24	98.21	INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937917.1 INO80 co...	[more]
XP_023537972.1	2.3e-24	98.21	chromatin-remodeling complex subunit ies6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022144563.1	3.9e-24	94.64	INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 c...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0031011	Ino80 complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006338	chromatin remodeling

Vocabulary: **INTERPRO**
Term	Definition
IPR029525	INO80C/Ies6
IPR013272	Vps72/YL1_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0031011	Ino80 complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000932	Bhi06M000932	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013272	Vps72/YL1, C-terminal	SMART	SM00993	YL1_C_2	coord: 6..35 e-value: 2.1E-12 score: 57.2
IPR013272	Vps72/YL1, C-terminal	PFAM	PF08265	YL1_C	coord: 7..35 e-value: 4.3E-15 score: 55.0
IPR029525	INO80 complex, subunit Ies6	PANTHER	PTHR31200	FAMILY NOT NAMED	coord: 1..55

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi06G000932	Csa2G077540	Cucumber (Chinese Long) v2	cuwgoB139
Bhi06G000932	ClCG11G010360	Watermelon (Charleston Gray)	wcgwgoB142
Bhi06G000932	CSPI02G07560	Wild cucumber (PI 183967)	cpiwgoB139
Bhi06G000932	Cucsa.178270	Cucumber (Gy14) v1	cgywgoB366
Bhi06G000932	CmaCh12G009770	Cucurbita maxima (Rimu)	cmawgoB0183
Bhi06G000932	CmoCh12G009800	Cucurbita moschata (Rifu)	cmowgoB0180
Bhi06G000932	Lsi11G009020	Bottle gourd (USVL1VR-Ls)	lsiwgoB110
Bhi06G000932	Cp4.1LG07g08120	Cucurbita pepo (Zucchini)	cpewgoB1016
Bhi06G000932	CsGy2G007800	Cucumber (Gy14) v2	cgybwgoB132
Bhi06G000932	MELO3C008634.2	Melon (DHL92) v3.6.1	medwgoB460
Bhi06G000932	Carg23461	Silver-seed gourd	carwgoB0585
Bhi06G000932	CsaV3_2G009990	Cucumber (Chinese Long) v3	cucwgoB146
Bhi06G000932	Cla97C11G216590	Watermelon (97103) v2	wgowmbB115

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G000932	Cucurbita maxima (Rimu)	cmawgoB0930
Bhi06G000932	Cucurbita moschata (Rifu)	cmowgoB0933
Bhi06G000932	Cucurbita pepo (Zucchini)	cpewgoB0127
Bhi06G000932	Melon (DHL92) v3.6.1	medwgoB468
Bhi06G000932	Melon (DHL92) v3.5.1	mewgoB458
Bhi06G000932	Melon (DHL92) v3.5.1	mewgoB467
Bhi06G000932	Watermelon (97103) v1	wgowmB148
Bhi06G000932	Silver-seed gourd	carwgoB0215