Cla007883 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007883
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	INO80 complex subunit C (AHRD V1 ***- Q8RWS0_ARATH)
Location	Chr11 : 10045643 .. 10046319 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTGAATTTCAAACGAATTCAAATGTACGAGAAGTATCCTAAAGGCCAATCCAGAGGTAGGCACTGGAAACATCTGAAGCAAATTCTTCAAGCCGAGAACTACCACAATTACTCCCCTGATGAACCCAACTGTAAGTTTTCCCTTTTTAATTTCAATCATTTGTCTCTTACTGTTTCTCCATGATTTGATTACACCTTTAACTTGAGAAGGAGTTCGTCTGTAAATTTATTTTTGTTACTGCTCTGATGCATGGACTGCGATTTTTTTTGTTCGATAATCATTGAAGAGGTTAACGATAAACTTCTTTTTGTTCCAATTTAGTTCATTTTTTTTACAAACTTTCAATTTAGTTCTTGGTGAATGTTAGAATTGGTTAACGATAAATTTACACGAACAGAATATTTAATGAATTGGTGAAAATTTAGAAGAGAAAAAAAATGTCATCTAATATAAGAAAACTCAAATTTCTATCAATTCTTAGAAATTTGTTGCTTTCCTCTGATTTTTTTCTCTAAATGTTGCCAGTTTGCTTATCGATTTGTTTCTCTTTTTGGAAGCTTTTGAAGTATTTTTGGTGTGGAATAGGGATTGCAGGGTTTCCTCCTTTTAGAGAGAAGGGCCATATTCTATGA

mRNA sequence

ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTGAATTTCAAACGAATTCAAATGTACGAGAAGTATCCTAAAGGCCAATCCAGAGGTAGGCACTGGAAACATCTGAAGCAAATTCTTCAAGCCGAGAACTACCACAATTACTCCCCTGATGAACCCAACTGGATTGCAGGGTTTCCTCCTTTTAGAGAGAAGGGCCATATTCTATGA

Coding sequence (CDS)

ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGATCCACCTGAATTTCAAACGAATTCAAATGTACGAGAAGTATCCTAAAGGCCAATCCAGAGGTAGGCACTGGAAACATCTGAAGCAAATTCTTCAAGCCGAGAACTACCACAATTACTCCCCTGATGAACCCAACTGGATTGCAGGGTTTCCTCCTTTTAGAGAGAAGGGCCATATTCTATGA

Protein sequence

MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWIAGFPPFREKGHIL

Homology

[Close]

BLAST of Cla007883 vs. TrEMBL
Match: A0A0A0LJN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077540 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-26
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWI 60
          ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPN++
Sbjct: 1  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60

[Close]

BLAST of Cla007883 vs. TrEMBL
Match: A0A068UZW1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038949001 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-23
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWI 60
          ME EV+EAE+VLP HLNFKR+QMYEKYPKGQ+RGRHWKHLKQI+QAENY NY+PDEPN++
Sbjct: 1  MEAEVVEAEIVLPTHLNFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYAPDEPNYV 60

[Close]

BLAST of Cla007883 vs. TrEMBL
Match: A0A067LEK3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17270 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-23
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 1   MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWI 60
           MEPEVI+AELVLP HL+FKRIQMYEKYPKGQ+RGRHWKHLKQILQAEN+ NY PDEPN++
Sbjct: 107 MEPEVIKAELVLPTHLSFKRIQMYEKYPKGQARGRHWKHLKQILQAENFQNYPPDEPNYV 166

[Close]

BLAST of Cla007883 vs. TrEMBL
Match: M5VTH2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024988mg PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-23
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1   MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWI 60
           MEPEV+ AELVLP HL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY P+EPN++
Sbjct: 121 MEPEVVHAELVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPNEPNYV 180

[Close]

BLAST of Cla007883 vs. TrEMBL
Match: W9QBU4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006062 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-23
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWI 60
          ME EVI+AELVLP HL+FK+IQMYEKYPKGQSRGRHWKHLKQI+QAENY NY PDEPN++
Sbjct: 1  MEAEVIQAELVLPTHLSFKKIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPNYV 60

[Close]

BLAST of Cla007883 vs. NCBI nr
Match: gi|659082319|ref|XP_008441777.1| (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 57/60 (95.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWI 60
          MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPN++
Sbjct: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYV 60

[Close]

BLAST of Cla007883 vs. NCBI nr
Match: gi|449470210|ref|XP_004152811.1| (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWI 60
          ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPN++
Sbjct: 1  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60

[Close]

BLAST of Cla007883 vs. NCBI nr
Match: gi|694380660|ref|XP_009366445.1| (PREDICTED: chromatin-remodeling complex subunit ies6 [Pyrus x bretschneideri])

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-24
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWI 60
          MEPEV++AELVLP HL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY PDEPN++
Sbjct: 1  MEPEVVDAELVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPNYV 60

[Close]

BLAST of Cla007883 vs. NCBI nr
Match: gi|1009150865|ref|XP_015893252.1| (PREDICTED: chromatin-remodeling complex subunit ies6 [Ziziphus jujuba])

HSP 1 Score: 117.9 bits (294), Expect = 7.6e-24
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWI 60
          MEPEVI+AE+VLP HL+FKRIQMYEKYPKGQSRGRHWKHLKQI+QAENY NY PDEPN++
Sbjct: 1  MEPEVIQAEMVLPTHLSFKRIQMYEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPNYV 60

[Close]

BLAST of Cla007883 vs. NCBI nr
Match: gi|661882528|emb|CDP13842.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 1  MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNWI 60
          ME EV+EAE+VLP HLNFKR+QMYEKYPKGQ+RGRHWKHLKQI+QAENY NY+PDEPN++
Sbjct: 1  MEAEVVEAEIVLPTHLNFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYAPDEPNYV 60

The following BLAST results are available for this feature:

BLAST of Cla007883 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJN6_CUCSA	1.5e-26	95.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G077540 PE=4 SV=1	[more]
A0A068UZW1_COFCA	1.2e-23	81.67	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038949001 PE=4 SV=1	[more]
A0A067LEK3_JATCU	1.5e-23	85.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17270 PE=4 SV=1	[more]
M5VTH2_PRUPE	2.6e-23	83.33	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024988mg PE=4 S...	[more]
W9QBU4_9ROSA	5.9e-23	83.33	Uncharacterized protein OS=Morus notabilis GN=L484_006062 PE=4 SV=1	[more]

BLAST of Cla007883 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082319\|ref\|XP_008441777.1\|	1.6e-26	95.00	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]	[more]
gi\|449470210\|ref\|XP_004152811.1\|	2.1e-26	95.00	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus]	[more]
gi\|694380660\|ref\|XP_009366445.1\|	5.8e-24	85.00	PREDICTED: chromatin-remodeling complex subunit ies6 [Pyrus x bretschneideri]	[more]
gi\|1009150865\|ref\|XP_015893252.1\|	7.6e-24	85.00	PREDICTED: chromatin-remodeling complex subunit ies6 [Ziziphus jujuba]	[more]
gi\|661882528\|emb\|CDP13842.1\|	1.7e-23	81.67	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0031011	Ino80 complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007883	Cla007883.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31200	FAMILY NOT NAMED	coord: 1..58 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007883	Cla97C11G216590	Watermelon (97103) v2	wmwmbB364
Cla007883	Csa2G077540	Cucumber (Chinese Long) v2	cuwmB156
Cla007883	MELO3C008634	Melon (DHL92) v3.5.1	mewmB428
Cla007883	ClCG11G010360	Watermelon (Charleston Gray)	wcgwmB109
Cla007883	CSPI02G07560	Wild cucumber (PI 183967)	cpiwmB158
Cla007883	Cucsa.178270	Cucumber (Gy14) v1	cgywmB342
Cla007883	CmaCh12G009770	Cucurbita maxima (Rimu)	cmawmB173
Cla007883	CmoCh12G009800	Cucurbita moschata (Rifu)	cmowmB160
Cla007883	Lsi11G009020	Bottle gourd (USVL1VR-Ls)	lsiwmB110
Cla007883	Cp4.1LG07g08120	Cucurbita pepo (Zucchini)	cpewmB811
Cla007883	CsGy2G007800	Cucumber (Gy14) v2	cgybwmB148
Cla007883	MELO3C008634.2	Melon (DHL92) v3.6.1	medwmB416
Cla007883	Carg23460	Silver-seed gourd	carwmB0478
Cla007883	CsaV3_2G009990	Cucumber (Chinese Long) v3	cucwmB167

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007883	Wax gourd	wgowmB148
Cla007883	Cucurbita maxima (Rimu)	cmawmB767
Cla007883	Cucurbita moschata (Rifu)	cmowmB760
Cla007883	Melon (DHL92) v3.5.1	mewmB423
Cla007883	Cucurbita pepo (Zucchini)	cpewmB118
Cla007883	Melon (DHL92) v3.6.1	medwmB413
Cla007883	Silver-seed gourd	carwmB0155