Carg23460 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23460
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	INO80 complex subunit C
Location	Cucurbita_argyrosperma_scaffold_196 : 86905 .. 88621 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCAAAAGGCCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAGATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTGTAAGATTTCTCTTTCAGTTTCAATCATTTTATTTGATTACATCTTTTGCTTGAGAAGGTGTTCGTCTGTAAATTTATTTGTTGTGAGATCCCACATCGGTTGGAGAGGAGAACGGAACACTTTATAAGAGTGTGGAAACCTCTCACTAGGAGATGCATTGTGAAAACCTTGAGGGGAAGTGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCCGTCGGACGATGTGCCAGTGAGGAAGCTAAGCCCCGAAGGAGCGGACACGAGGCGGTGTGCCAGCAAGGACGTTGGGCCCAAAGGGGATAGATTGGGGGTTCTACATCGATTGGAGAGGGGAACTAGTGTCAGCGAGGACGCTGGACCCCAAAGGAGGTGGATTGTAAGATCCCACATCGGTTGGGGAGGAGAACGAAACACTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACTCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTCGAGTCATCGGGCGATGTGCCAACGAGGAGACTAAGCCCCGAAGGGGTGGACACGAGGCGGTGTGCCAGCAAAGACGCTGGGTCCCAAAGGGGGTGGATTGGGGGTTCTACATCGATTGGAGAAGGGAACGAGTGTTAGCGAGGACGTTGGACCTCGAATGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAAAGAAACACCCTTTATAGCGGTGTGGAAACCTCTCCCTAGCATACGTTTTTTAAAAACCTTGAGGGAAAGTCTGAAAGGGAAAGCCTAAAGAGAACAATATCTGCTAGTTGTGGGTTTGGGCTGTTACATTTTTGTTGTTGCTTTGATGCGTGGACTGAGAGGTTTTTGTTTGATAATTATTTAATAGGTTAGATGTATGAATTAGTTCTTGATGTTGGAGTGTTTTTTAAATTTAGTTTATGTTCTTTAAAGCTTATTGGTTGATTATAAACTCATATGGACGTTAGAATTGGTAGAGAGTTGAGAGGAGAAAAACAAGGTCATCTAAGACGAGCAATATCAAAGTTCTACCAATTCTTAGAAGTTTGAAGTGAATTTGAAGCTTTCGTCATCTTTTATCTCCAAAGGTTGCTAGACTGCTCAGTCGACTTGGACCTTTTATGGAGGCTTTTGAAGTGTCTTTTTGGAAATGTTGCTTGTGAAATCCTACATCGGTTGGGGAGGAGAATGAAACATCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATATGCGTTTTAAAAACTTTGAGGGAAAGTCCGAAAGGAAAAGCCCAAAAAGGATAATATTTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAAAGTCAAATACCGGGCGATGTGCCAGCGAGGAGGCTGAGCCTCAAAGGGGGTGGATACAAGGCGGCGTGCTAACGAGGAAGCTAAGTCCCGAAGGGGGTGGATTAGGGGGTCCCACATCGATTGGAGAAGGGAATGAGTGTCAGCGAGGACGCTAG

mRNA sequence

ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCAAAAGGCCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAGATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTGTAAGATTTCTCTTTCAGTTTCAATCATTTTATTTGATTACATCTTTTGCTTGAGAAGGAGATGCATTGTGAAAACCTTGAGGGGAAGTGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCCGTCGGACGATGTGCCAGTGAGGAAGCTAAGCCCCGAAGGAGCGGACACGAGGCGGTGTGCCAGCAAGGACGTTGGGCCCAAAGGGGATAGATTGGGGGTTCTACATCGATTGGAGAGGGGAACTAGTGTCAGCGAGGACGCTGGACCCCAAAGGAGGTGGATTACTCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTCGAGTCATCGGGCGATGTGCCAACGAGGAGACTAAGCCCCGAAGGGGTGGACACGAGGCGGTGTGCCAGCAAAGACGCTGGGTCCCAAAGGGGGTGGATTGGGGGTTCTACATCGATTGGAGAAGGGAACGACGAGGAGGCTGAGCCTCAAAGGGGGTGGATACAAGGCGGCGTGCTAACGAGGAAGCTAAGTCCCGAAGGGGGTGGATTAGGGGGTCCCACATCGATTGGAGAAGGGAATGAGTGTCAGCGAGGACGCTAG

Coding sequence (CDS)

ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCAAAAGGCCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAGATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTGTAAGATTTCTCTTTCAGTTTCAATCATTTTATTTGATTACATCTTTTGCTTGAGAAGGAGATGCATTGTGAAAACCTTGAGGGGAAGTGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCCGTCGGACGATGTGCCAGTGAGGAAGCTAAGCCCCGAAGGAGCGGACACGAGGCGGTGTGCCAGCAAGGACGTTGGGCCCAAAGGGGATAGATTGGGGGTTCTACATCGATTGGAGAGGGGAACTAGTGTCAGCGAGGACGCTGGACCCCAAAGGAGGTGGATTACTCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTCGAGTCATCGGGCGATGTGCCAACGAGGAGACTAAGCCCCGAAGGGGTGGACACGAGGCGGTGTGCCAGCAAAGACGCTGGGTCCCAAAGGGGGTGGATTGGGGGTTCTACATCGATTGGAGAAGGGAACGACGAGGAGGCTGAGCCTCAAAGGGGGTGGATACAAGGCGGCGTGCTAACGAGGAAGCTAAGTCCCGAAGGGGGTGGATTAGGGGGTCCCACATCGATTGGAGAAGGGAATGAGTGTCAGCGAGGACGCTAG

Protein sequence

MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCKISLSVSIILFDYIFCLRRRCIVKTLRGSERESPKRTISASGGLEPSDDVPVRKLSPEGADTRRCASKDVGPKGDRLGVLHRLERGTSVSEDAGPQRRWITRFKNLEGKPERESPKRTISASGGLESSGDVPTRRLSPEGVDTRRCASKDAGSQRGWIGGSTSIGEGNDEEAEPQRGWIQGGVLTRKLSPEGGGLGGPTSIGEGNECQRGR

Homology

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BLAST of Carg23460 vs. NCBI nr
Match: XP_022937916.1 (INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937917.1 INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937918.1 INO80 complex subunit C isoform X2 [Cucurbita moschata] >XP_022966011.1 INO80 complex subunit C isoform X1 [Cucurbita maxima] >XP_022966012.1 INO80 complex subunit C isoform X1 [Cucurbita maxima] >XP_022966013.1 INO80 complex subunit C isoform X2 [Cucurbita maxima] >XP_023536867.1 INO80 complex subunit C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN 59
          MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN
Sbjct: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN 58

[Close]

BLAST of Carg23460 vs. NCBI nr
Match: XP_022144563.1 (INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144565.1 INO80 complex subunit C isoform X2 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 3.8e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN 59
          MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+S DEPN
Sbjct: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPN 58

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BLAST of Carg23460 vs. NCBI nr
Match: OIW01816.1 (hypothetical protein TanjilG_28879 [Lupinus angustifolius])

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-23
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCK 60
          MEPE++EAELVLP+H +FKR+ MYEKYPKGQ+RGRHWKHLKQI+QAENY NY  DEPNC+
Sbjct: 1  MEPEIVEAELVLPSHFSFKRVHMYEKYPKGQARGRHWKHLKQIVQAENYQNYPPDEPNCE 60

Query: 61 ISLSVSIILFDYIF 75
          IS+    ILF   F
Sbjct: 61 ISVPCLFILFFSFF 74

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BLAST of Carg23460 vs. NCBI nr
Match: RDX73699.1 (hypothetical protein CR513_46654, partial [Mucuna pruriens])

HSP 1 Score: 114.8 bits (286), Expect = 4.7e-22
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCK 60
          ME EV+EAELVLP++L+FKR+QMYEKYPKGQ+RGRHWKHLKQI+QAENY NY  DEPNC+
Sbjct: 19 MEAEVVEAELVLPSYLSFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYPPDEPNCE 78

Query: 61 ISLSVSIILF 71
          +S S  + +F
Sbjct: 79 LSHSHPLSVF 88

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BLAST of Carg23460 vs. NCBI nr
Match: XP_010690324.1 (PREDICTED: INO80 complex subunit C [Beta vulgaris subsp. vulgaris] >XP_010690325.1 PREDICTED: INO80 complex subunit C [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-21
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN 59
          ME EVIEAELVLPTHLNFK+IQMYEKYPKGQSRGRHWKHLKQILQAENY NY  DEPN
Sbjct: 1  MEREVIEAELVLPTHLNFKKIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPLDEPN 58

[Close]

BLAST of Carg23460 vs. TAIR10
Match: AT4G38495.1 (YL1 nuclear, C-terminal (InterPro:IPR013272))

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEP 58
          ME E++EA++V+ + L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +   D P
Sbjct: 1  MERELMEADIVVASRLSFKKKQAYEKYPKAQSSSRRWKHLKQILQAENFPDLPPDLP 57

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BLAST of Carg23460 vs. TrEMBL
Match: tr|A0A1J7GMT1|A0A1J7GMT1_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_28879 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.6e-24
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNCK 60
          MEPE++EAELVLP+H +FKR+ MYEKYPKGQ+RGRHWKHLKQI+QAENY NY  DEPNC+
Sbjct: 1  MEPEIVEAELVLPSHFSFKRVHMYEKYPKGQARGRHWKHLKQIVQAENYQNYPPDEPNCE 60

Query: 61 ISLSVSIILFDYIF 75
          IS+    ILF   F
Sbjct: 61 ISVPCLFILFFSFF 74

[Close]

BLAST of Carg23460 vs. TrEMBL
Match: tr|A0A068UZW1|A0A068UZW1_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00038949001 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN 59
          ME EV+EAE+VLPTHLNFKR+QMYEKYPKGQ+RGRHWKHLKQI+QAENY NY+ DEPN
Sbjct: 1  MEAEVVEAEIVLPTHLNFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYAPDEPN 58

[Close]

BLAST of Carg23460 vs. TrEMBL
Match: tr|A0A067LEK3|A0A067LEK3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17270 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN 59
           MEPEVI+AELVLPTHL+FKRIQMYEKYPKGQ+RGRHWKHLKQILQAEN+ NY  DEPN
Sbjct: 107 MEPEVIKAELVLPTHLSFKRIQMYEKYPKGQARGRHWKHLKQILQAENFQNYPPDEPN 164

[Close]

BLAST of Carg23460 vs. TrEMBL
Match: tr|A0A251JU07|A0A251JU07_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G097800 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.8e-21
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN 59
          MEPEV+ AELVLPTHL+FKR+QMYEKYPKGQ+RGRHWKHLKQILQAEN+ NY  DEPN
Sbjct: 1  MEPEVVRAELVLPTHLSFKRMQMYEKYPKGQARGRHWKHLKQILQAENFQNYPPDEPN 58

[Close]

BLAST of Carg23460 vs. TrEMBL
Match: tr|A0A161ZLQ4|A0A161ZLQ4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025267 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.6e-21
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPN 59
           ME EVIEAELVLPTHL+FK++QMYEK+PKGQSRGRHWKHLKQI+QAENY NY +DEPN
Sbjct: 321 MEHEVIEAELVLPTHLSFKKVQMYEKFPKGQSRGRHWKHLKQIIQAENYQNYPADEPN 378

The following BLAST results are available for this feature:

BLAST of Carg23460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937916.1	2.6e-25	100.00	INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937917.1 INO80 co...	[more]
XP_022144563.1	3.8e-24	96.55	INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 c...	[more]
OIW01816.1	1.4e-23	71.62	hypothetical protein TanjilG_28879 [Lupinus angustifolius]	[more]
RDX73699.1	4.7e-22	72.86	hypothetical protein CR513_46654, partial [Mucuna pruriens]	[more]
XP_010690324.1	1.0e-21	91.38	PREDICTED: INO80 complex subunit C [Beta vulgaris subsp. vulgaris] >XP_010690325...	[more]

BLAST of Carg23460 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38495.1	1.1e-12	57.89	YL1 nuclear, C-terminal (InterPro:IPR013272)	[more]

BLAST of Carg23460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1J7GMT1\|A0A1J7GMT1_LUPAN	9.6e-24	71.62	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_28879 PE=4 S...	[more]
tr\|A0A068UZW1\|A0A068UZW1_COFCA	1.2e-21	84.48	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00038949001 PE=4 ...	[more]
tr\|A0A067LEK3\|A0A067LEK3_JATCU	1.5e-21	87.93	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17270 PE=4 SV=1	[more]
tr\|A0A251JU07\|A0A251JU07_MANES	5.8e-21	84.48	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G097800 PE=4 SV=...	[more]
tr\|A0A161ZLQ4\|A0A161ZLQ4_DAUCA	7.6e-21	84.48	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025267 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23460-RA	Carg23460-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..270
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..175

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23460	Cla007883	Watermelon (97103) v1	carwmB0478
Carg23460	Csa2G077540	Cucumber (Chinese Long) v2	carcuB0514
Carg23460	MELO3C008634	Melon (DHL92) v3.5.1	carmeB0487
Carg23460	ClCG11G010360	Watermelon (Charleston Gray)	carwcgB0466
Carg23460	CSPI02G07560	Wild cucumber (PI 183967)	carcpiB0521
Carg23460	Cucsa.178270	Cucumber (Gy14) v1	carcgyB0554
Carg23460	CmaCh12G009770	Cucurbita maxima (Rimu)	carcmaB0670
Carg23460	CmoCh12G009800	Cucurbita moschata (Rifu)	carcmoB0652
Carg23460	Lsi11G009020	Bottle gourd (USVL1VR-Ls)	carlsiB436
Carg23460	Cp4.1LG07g08120	Cucurbita pepo (Zucchini)	carcpeB0676
Carg23460	CsGy2G007800	Cucumber (Gy14) v2	carcgybB0490
Carg23460	MELO3C008634.2	Melon (DHL92) v3.6.1	carmedB0493
Carg23460	CsaV3_2G009990	Cucumber (Chinese Long) v3	carcucB0519
Carg23460	Cla97C11G216590	Watermelon (97103) v2	carwmbB0505

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23460	Wax gourd	carwgoB0585
Carg23460	Cucurbita pepo (Zucchini)	carcpeB0675
Carg23460	Cucurbita maxima (Rimu)	carcmaB0671
Carg23460	Cucurbita moschata (Rifu)	carcmoB0653
Carg23460	Melon (DHL92) v3.5.1	carmeB0486
Carg23460	Melon (DHL92) v3.6.1	carmedB0492