MELO3C008212 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008212
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Actin-related protein 2/3 complex subunit 5
Location	chr3 : 1932949 .. 1937083 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAAAACCATCGCACCTCAAAAGACCATTCGGCGGCGAGAAAACCTGTCATCTCTTCTTTTCACAAATCACAATTCACATTTAGCTCCGATTTCATTCATACAACTGTTGGGTTATCGATCTGTATTGGTATGATCAGTTTTTAGTTAAGCTCGAGAAAATCCTACTGGAAGTAGGGTGATAACGCAAGGCGAAAATGGCGACTACATGTGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAAAGCTTACTCAAACAGTAATGAATTCTGTACCTTCTCTTTGATTTACACCATTTAATTCATTTAACTCTCTTATTGAAGACGCCCCAATTTGTTAACTTTTTTTACTCTTACAAGGTCTAAACCAGTCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGTTGTAAGGTATCCTTTCTTTCTTACTGCCTACCGAGCTGTCGTGTCTTGTTCAGAGCTAATGACGGTGTAGGATCGATATTCATGTTGGTTCCTTGCATTTTTCTGTGATAAGTGTTTTATTTTGATTATTTAGTTTGTGGGTGATGCTAGAAATGTTAAGGGAAATTATTGGAGAATCCTTGTTTTTTAGTCATCATTAAATTTATTTGTTATGCTTTTCCTATATTTTCTTAATGACGATGCCAATTAGGACTGTTGGATGTTGATTTAATTTTTGGAAAGAGTTTGCTGTGTTTGTTTGCAGCTACTGAAAATGAATGGGCTTGCTGTTTCTTTCATGTTTATGTTTTGTTGGTCTGCTTGACATTGGGAGGATGAGTTAATCTGATGTGATTATTTGGACTTCTTCAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTACGATATTCTAATGAAGTGAGTTTATGCGGTATTTAACTGCTAAAATATCAATTCTCATTGCTTCTACTTATCTCATTCTCAGCAGGAACGTTTAATTAGTTCCAAGTTTACTTTCTGATATTATTCTTTTGCTATGAAATTTATACTTAAGTGGTTGGGTTGATCCTACTGCTTTGTAAACAAACATTCTGTTTTCCATTTTTCCTAATCTCTTCAGATTTCTACTGCTAGCTGTGTTCGTGTCAGTAGGACATATGGTAGTCTTTAGATACTTGGAAGATTGCTTCGCTGATATGAATTTTTTTTGCTTTTGTAAGGAGTCTTCAATGGTTTATCCTTGGCAATCTTGTATTGCTTCACCCCTTTATGGTTTGGTTTTTGTCCATTGGAATGTAGAGACTTGTTCATGGCATCCCACTTTTTGAAAAGCTAGGTGGTTGGCCTTTGAACGCCTTTGGAAATATATCAGGTTTTATGAAATTCTAAAAGTTCCAAGTGATTCAATGTTTTGGAGTGGAGAATGTTCCCCTCCTGTCTTCAAGATCTCATTTTAATGGTTCAATGAACTCAAAAGTCTTCCTTCAGAGATTTGGTTTGATTGTAATTAGAGGGCTCCTTCTCTCCTACCAGTTGTCCTCACCAAATGGTTACTTGTTTTGAGAGTTTCAATTTCAGTGGTGTTTGTATTTGCTTTTATTTTCTGAGCAAGTACAGTGTTGGGATATATTCCGATGCCTTTGCTTTATCTTGCTTTTTATGTCTTTCTATTTCAAGCATTAGCCTCTTTTCATTTCATTCTTTCAGTGAAAAGTTTTGTTTATGTTAAAAAACTAAAATTATTTTTTTGCTAGGAGTCTTTGTAAAAGTGGAAATCTCTCTAACCATCATGCTTGAAATATCTCATTACATCTTCTGAATCTAGCAAGTCATGTCCAACCCTTCTGCCAATGGGTCTTGCAAAATTTATTATTCTTGTCCTATATTCGTATGTGTCTATTTAGCATGCTTAACAAGTGTTCAATACATGTCTAATAATGTTAGACATATATTGACTTTGTAGTTTGTATAAGTATAACTAATTTGTAACACATGCTAACAAACGTCTGACACATCCAACAAGTGTGGAGTGTCCGAATGTCGGACATAGACATATTAGTCAAATTAAAGTGTTTATGTTTCTTTAAGGCCTTGTCTTCCAGCAGTCTCTCAATTTGTTTTCCAACACATTCCCTAATATACAAGGATTATGAACACCAACAAGAAGTAAGTGAGGATACTTGACAATACTCATTTGGCCAATGGTAATCCTTCCCTTTGGAACATCAGGACTGTTTTCTTGTGGAGCATCTTTTGAGATTAATGACAGGGTTTCAAAAGCCAATTGGCCTCAATTAGTCTCCAAGCATAGGCACCATGTGAATCATTTGTGGGGAAGTAGTGGCGGATCACCTTTTCTGAGATTAATGACAGGGTTTCAAAAGCCCATGACCTCGATTGTCCTCCAAGCATCAAATGGAAGGGCTTTTCTCCTGAGTATATGTCTGTTCCTCTTGTCTTAAGTACCACCAAGAATATCTGTTCATGCGATCTTATAACACTTAACCTTTTCTTTTCTTTAAAAGGATTCACCAAGAGAGATATCCACAGACTCCTTAATATTTCAAGAATAGCTGGAAACCAGCCAAAACTAAAAGAACTAACAAAAAGCCTGCATTTTAAGCATGGTTGCAATTAGAATAAAATATGATCTTTGTTTTCTTCTTACTATATGCATATGGCATCATACCAACTGGACGAAATGGAGAATTAGGTTTCTAGCTTGGATTTCTATCTTATAGAAGATTTAAAAAATTACTCCAAATGGTGTATTTTTCAGTAGAGTTCTCCAAAGCCACTTGGCCGTGAACGTGATATTTTTTTTTTTCCTTGAGATTACCAAGATTAAACTCTCCAAGATGAAGAGGAAGCTTACTCTTTTCCAAATGACAATGTATGATCGACCTTCAGTACCAGATCCATTAAAACTCAAGCAGAAAAAGCACTTTGGAAGATGGTTATTTCCAGTAAAAATGGGGTGAAACTCAGCGCTTGAAAAAGTAAAGTTCCATAGAAAATCAAGTTCTTCCTTTGGCCCTTGCTTGAAGAGGTTTAAACACAAAAAAGCTTGTAGGAGACGAATCCAAAATACGTTCTTTCTTCACTTGATTGTGGCTTATGACTTGATGGAAAAAATTATTCTTCCACTGTCAGTTTTGTACTGGCTTAATTATTCAGCCTTTTCAATGTCTTCTTATGCCTTCCCAGGAACCTCCAAGATTGGTTATACAAAGTGTTCTACAATTGGTGGTTGAAAGGGGAAACTGGACATCTTGGGACATGCACCTTTTGATTGCCCTACACAAAGCATTATTTGATAACCATAATGTTTCTTTTATCATCCTTTCCAACTTGAACGCCATCCATGTAAAACCTGTGAGTAGGCCTCTAGGAAGGAGCATGATGAAACAATTAGATGCTAAAATGAATAGGAAGTGCAGAAAAGATTTCCATTAACTCATCTCAAGGCAAGCGTTTTCTTTATAGGGTTGCTGCTAGTATGATGGAATAACTATCTTCCAAAACATTAGCATGAATTTGCCTCCTTCAACAAGTGCAAAAGCTACTTCAAGATAGTATCTAGAAACTTCCACTAAACAAGCATTCACGGATTTTGAATCCAAATATTATGCCACATCCAACATTTATCTATGTTGTTTTCTTTCCAAAACTTGAGTATTTATATGTATAACCATTTGCAGGTACTTGTATAGAGGGTTGTCAACTGGTGATCGTCCCACATGTGATCAATGTCTCAGGATACATGAAAAGTTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCCGATACTATTAATACTGTTTGATTTTTCTTTTGAGCAACTTTTGGTTGATGTTGGATATATGTCATACTAAGAGCTGAAAATGTACTCAGTTCCATCGAGTTTTGACAGGTGTAAATTGCTTTCCAGATTGTGGATTTATGTCAACCAGATTTAATTTCTAAATGTACTTGTAATTTGTAATTTGAACAATTGAATGTAGACTGAAATTGAATATAACCTATGGACTAGACGAAGTTAGAGCGTGGGTTAGTGACTCTAATACC

mRNA sequence

AAACAAAACCATCGCACCTCAAAAGACCATTCGGCGGCGAGAAAACCTGTCATCTCTTCTTTTCACAAATCACAATTCACATTTAGCTCCGATTTCATTCATACAACTGTTGGGTTATCGATCTGTATTGGTATGATCAGTTTTTAGTTAAGCTCGAGAAAATCCTACTGGAAGTAGGGTGATAACGCAAGGCGAAAATGGCGACTACATGTGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAAAGCTTACTCAAACAGTCTAAACCAGTCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGTTGTAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTACGATATTCTAATGAAGTACTTGTATAGAGGGTTGTCAACTGGTGATCGTCCCACATGTGATCAATGTCTCAGGATACATGAAAAGTTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCCGATACTATTAATACTGTTTGATTTTTCTTTTGAGCAACTTTTGGTTGATGTTGGATATATGTCATACTAAGAGCTGAAAATGTACTCAGTTCCATCGAGTTTTGACAGGTGTAAATTGCTTTCCAGATTGTGGATTTATGTCAACCAGATTTAATTTCTAAATGTACTTGTAATTTGTAATTTGAACAATTGAATGTAGACTGAAATTGAATATAACCTATGGACTAGACGAAGTTAGAGCGTGGGTTAGTGACTCTAATACC

Coding sequence (CDS)

ATGGCGACTACATGTGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAAAGCTTACTCAAACAGTCTAAACCAGTCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGTTGTAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTACGATATTCTAATGAAGTACTTGTATAGAGGGTTGTCAACTGGTGATCGTCCCACATGTGATCAATGTCTCAGGATACATGAAAAGTTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCCGATACTATTAATACTGTTTGA

Protein sequence

MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV*

Homology

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BLAST of MELO3C008212 vs. Swiss-Prot
Match: ARC5A_ARATH (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 236.1 bits (601), Expect = 2.2e-61
Identity = 117/130 (90.00%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 6   EFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVH 65
           EFVEADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3   EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCIL 125
           RALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCIL
Sbjct: 63  RALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 122

Query: 126 RSLADTINTV 136
           R L DTINTV
Sbjct: 123 RCLTDTINTV 132

[Close]

BLAST of MELO3C008212 vs. Swiss-Prot
Match: ARC5B_ARATH (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-55
Identity = 107/135 (79.26%), Postives = 114/135 (84.44%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

[Close]

BLAST of MELO3C008212 vs. Swiss-Prot
Match: ARPC5_HUMAN (Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-09
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1


Query: 26  KIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of MELO3C008212 vs. Swiss-Prot
Match: ARPC5_PONAB (Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii GN=ARPC5 PE=2 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-09
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1


Query: 26  KIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of MELO3C008212 vs. Swiss-Prot
Match: ARPC5_RAT (Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus GN=Arpc5 PE=1 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-09
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1


Query: 26  KIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of MELO3C008212 vs. TrEMBL
Match: A0A0A0KD59_CUCSA (Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus GN=Csa_6G008040 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-69
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTC+FVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MELO3C008212 vs. TrEMBL
Match: W9R3V7_9ROSA (Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis GN=L484_021833 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-67
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T  FVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MELO3C008212 vs. TrEMBL
Match: A5AQ06_VITVI (Actin-related protein 2/3 complex subunit 5 OS=Vitis vinifera GN=VIT_15s0021g01870 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-66
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T EFVEADNAEAIITRIEHKSRKIESLLKQ KP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTKEFVEADNAEAIITRIEHKSRKIESLLKQHKPIEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVD +FSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAMMAIKDVDSLFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MELO3C008212 vs. TrEMBL
Match: M5WAX3_PRUPE (Actin-related protein 2/3 complex subunit 5 OS=Prunus persica GN=PRUPE_ppa013215mg PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.7e-66
Identity = 128/135 (94.81%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T EFVEADNAEAIITRIE KSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTEEFVEADNAEAIITRIEQKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI+VHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIMVHRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MELO3C008212 vs. TrEMBL
Match: A0A061DUG1_THECC (Actin-related protein 2/3 complex subunit 5 OS=Theobroma cacao GN=TCM_005690 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.1e-66
Identity = 128/135 (94.81%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA   +FVEADNAEAIITRIEHKSRKIESLLKQ+KPVEALKTALEGSPP TRDERCKSAN
Sbjct: 1   MAGVEKFVEADNAEAIITRIEHKSRKIESLLKQNKPVEALKTALEGSPPMTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MELO3C008212 vs. TAIR10
Match: AT4G01710.1 (AT4G01710.1 ARP2/3 complex 16 kDa subunit (p16-Arc))

HSP 1 Score: 236.1 bits (601), Expect = 1.3e-62
Identity = 117/130 (90.00%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 6   EFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVH 65
           EFVEADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3   EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCIL 125
           RALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCIL
Sbjct: 63  RALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 122

Query: 126 RSLADTINTV 136
           R L DTINTV
Sbjct: 123 RCLTDTINTV 132

[Close]

BLAST of MELO3C008212 vs. TAIR10
Match: AT5G65274.1 (AT5G65274.1 ARP2/3 complex 16 kDa subunit (p16-Arc))

HSP 1 Score: 216.5 bits (550), Expect = 1.0e-56
Identity = 107/135 (79.26%), Postives = 114/135 (84.44%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

[Close]

BLAST of MELO3C008212 vs. NCBI nr
Match: gi|659081508|ref|XP_008441367.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of MELO3C008212 vs. NCBI nr
Match: gi|449441438|ref|XP_004138489.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 2.2e-69
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTC+FVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MELO3C008212 vs. NCBI nr
Match: gi|703072505|ref|XP_010089302.1| (Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-67
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T  FVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MELO3C008212 vs. NCBI nr
Match: gi|1009143859|ref|XP_015889484.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba])

HSP 1 Score: 263.1 bits (671), Expect = 2.7e-67
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T EFVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of MELO3C008212 vs. NCBI nr
Match: gi|359489190|ref|XP_003633894.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Vitis vinifera])

HSP 1 Score: 259.6 bits (662), Expect = 3.0e-66
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T EFVEADNAEAIITRIEHKSRKIESLLKQ KP+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTKEFVEADNAEAIITRIEHKSRKIESLLKQHKPIEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVD +FSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAMMAIKDVDSLFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

The following BLAST results are available for this feature:

BLAST of MELO3C008212 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARC5A_ARATH	2.2e-61	90.00	Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana GN=ARPC5A P...	[more]
ARC5B_ARATH	1.8e-55	79.26	Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana GN=ARPC5B P...	[more]
ARPC5_HUMAN	9.9e-09	32.38	Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3	[more]
ARPC5_PONAB	9.9e-09	32.38	Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii GN=ARPC5 PE=2 SV=3	[more]
ARPC5_RAT	9.9e-09	32.38	Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus GN=Arpc5 PE=1 S...	[more]

BLAST of MELO3C008212 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD59_CUCSA	1.6e-69	97.78	Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus GN=Csa_6G008040 P...	[more]
W9R3V7_9ROSA	1.1e-67	97.04	Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis GN=L484_021833 PE...	[more]
A5AQ06_VITVI	2.1e-66	94.07	Actin-related protein 2/3 complex subunit 5 OS=Vitis vinifera GN=VIT_15s0021g018...	[more]
M5WAX3_PRUPE	4.7e-66	94.81	Actin-related protein 2/3 complex subunit 5 OS=Prunus persica GN=PRUPE_ppa013215...	[more]
A0A061DUG1_THECC	6.1e-66	94.81	Actin-related protein 2/3 complex subunit 5 OS=Theobroma cacao GN=TCM_005690 PE=...	[more]

BLAST of MELO3C008212 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01710.1	1.3e-62	90.00	ARP2/3 complex 16 kDa subunit (p16-Arc)	[more]
AT5G65274.1	1.0e-56	79.26	ARP2/3 complex 16 kDa subunit (p16-Arc)	[more]

BLAST of MELO3C008212 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081508\|ref\|XP_008441367.1\|	1.6e-70	100.00	PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo]	[more]
gi\|449441438\|ref\|XP_004138489.1\|	2.2e-69	97.78	PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis sativus]	[more]
gi\|703072505\|ref\|XP_010089302.1\|	1.6e-67	97.04	Actin-related protein 2/3 complex subunit 5 [Morus notabilis]	[more]
gi\|1009143859\|ref\|XP_015889484.1\|	2.7e-67	96.30	PREDICTED: actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba]	[more]
gi\|359489190\|ref\|XP_003633894.1\|	3.0e-66	94.07	PREDICTED: actin-related protein 2/3 complex subunit 5A [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006789	ARPC5

Vocabulary: **Cellular Component**
Term	Definition
GO:0005885	Arp2/3 protein complex
GO:0015629	actin cytoskeleton

Vocabulary: **Biological Process**
Term	Definition
GO:0030833	regulation of actin filament polymerization
GO:0034314	Arp2/3 complex-mediated actin nucleation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0051015	actin filament binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU46688	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008212T1	MELO3C008212T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU46688	MU46688	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006789	Actin-related protein 2/3 complex subunit 5	GENE3D	G3DSA:1.25.40.190		coord: 11..131 score: 1.5
IPR006789	Actin-related protein 2/3 complex subunit 5	PANTHER	PTHR12644	ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC	coord: 6..135 score: 1.9
IPR006789	Actin-related protein 2/3 complex subunit 5	PFAM	PF04699	P16-Arc	coord: 14..131 score: 1.6
IPR006789	Actin-related protein 2/3 complex subunit 5	unknown	SSF69103	Arp2/3 complex 16 kDa subunit ARPC5	coord: 6..131 score: 1.31

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008212	Csa6G008040	Cucumber (Chinese Long) v2	cumeB467
MELO3C008212	Cla006524	Watermelon (97103) v1	mewmB328
MELO3C008212	ClCG11G006910	Watermelon (Charleston Gray)	mewcgB272
MELO3C008212	Cla97C11G213860	Watermelon (97103) v2	mewmbB282
MELO3C008212	Bhi04G001964	Wax gourd	mewgoB341
MELO3C008212	CSPI06G01030	Wild cucumber (PI 183967)	cpimeB465
MELO3C008212	Cucsa.136000	Cucumber (Gy14) v1	cgymeB221
MELO3C008212	CmaCh04G029710	Cucurbita maxima (Rimu)	cmameB677
MELO3C008212	CmoCh04G030890	Cucurbita moschata (Rifu)	cmomeB669
MELO3C008212	Cp4.1LG01g25630	Cucurbita pepo (Zucchini)	cpemeB398
MELO3C008212	CsGy6G001090	Cucumber (Gy14) v2	cgybmeB407
MELO3C008212	Carg06045	Silver-seed gourd	carmeB0022
MELO3C008212	CsaV3_6G001140	Cucumber (Chinese Long) v3	cucmeB476

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008212	Cucurbita pepo (Zucchini)	cpemeB167
MELO3C008212	Cucurbita pepo (Zucchini)	cpemeB400
MELO3C008212	Bottle gourd (USVL1VR-Ls)	lsimeB259
MELO3C008212	Silver-seed gourd	carmeB0023
MELO3C008212	Silver-seed gourd	carmeB0983
MELO3C008212	Cucurbita maxima (Rimu)	cmameB267
MELO3C008212	Cucurbita maxima (Rimu)	cmameB679
MELO3C008212	Cucurbita moschata (Rifu)	cmomeB258
MELO3C008212	Cucurbita moschata (Rifu)	cmomeB671