Carg06045 (gene) Silver-seed gourd

Overview
NameCarg06045
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionActin-related protein 2/3 complex subunit 5
LocationCucurbita_argyrosperma_scaffold_026 : 798883 .. 801711 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCGTTTCTCATTATCTTCGTTTCTGCTGCTGCCGTTGCTAGTCGCCGGTCGTCGGTACGCCCCCACCGCCACGTTTTTTTTCCTTCTCTTCTTATATCCTTCCCTGCTGCAACCTCGCGCCACCATGGGTCAGTTTTCTATAGCAGCCCCTCCATCTTTCAAATTTTTTTTTTTTTTGGATTCAATCGACATCAAAATAGGGTAAATTTGAGATTAGGCCAATTTTAGTTTAAAATCCTGCCAAACCCGACTTATTTTGGATGGAAAACTTTTGGATCAAAGCAAGATCTCATATCATTTTGGATTTCAAATTCTATTTTTTCTATTCATACCAAACAGAAGTGCCTTCTAAATCCAGGGTTTCCTAACAGAGGCTAAGTTCGAGGAAATTCTACTGAAGGTTGGGTGATAGGCGAAAATGTCAGATGCATTTGTGGGAGCAGATAATGCCGAAGCCATAATCACTAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTAATGATCTCTATATCTGCTGTTTGATTTCTAAGATTTAAATATGTTTAGCTCCTCCTAACTTCCATTTTTAATAATTGAAAATGCCTCGATTAGCAATTTGTTTACTCGTTCAGGTCTAAAACAGTCGAAGCTCTAAAAACTGCTCTCGAAGGTTCGCCTCCGAATACACGAGATGAGCGCTGCAAGGTATCCCTTCTTTCATTTATGATCTCTTGCATGCTTCGTTATTGTTTTTCTACATCATGTTCTTTTTTCCTTGCAAGATCTAATAAGTTTTTGTGTTCATTATTATTAAATTTTTGGGTGATCTTTAGAAGTCTATAGGCAATTACGGTAGGTTCTCTGCTATCGGATGATAGTCATTTTCAATTATCGTGATCTTTTTTGAATGCTTTTCCTGTATTATCTCGATGATGGGGTCAATTAGAACTTGCTGGTAGTTGGTATATTTTTCGGAAGTAGTCTTCTCCATTTGCTTGCAGCTGCTCAAAATGAATGGACGTGTTATATTTTAGGTTTACGTGTTGTCGGTCTGCCTGAATTGAGCGAGAATTAAATAAATCTGATGTGATTTTTTGGACTTCTGCAGTCGGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGACGTAGATGGGATGTTTTCTTCGTTGGATCCGGAGTATTATGATATCCTAATGAAGTGAGTTCTTATGGTATTTAACTGCTAAGATGTCTATATTCCTATTGCTTCGATTATCTTTATGCGTATGAAGCTGGTTATTTATTTTTTTTTTTTTATCTTTAACAAATTTTGAACTTCTAGCTCTGCTAAGATATGTTCATGTCGATAGGAGGTTGAAAGAAAAAAATGATATGTCCACGTTGATAGGGATTGTGTTAGTCCCTAGTGCTTGGATGATTGGATGGCTGATCTTCATAACCGTTTAGCTAGAAATACCTCGTCACATCTTCTTAAGTTAGAAGGTCACAACCAGCCTTTCTCTCAATACACAGCAGCACTTCATTCCACTGATTTCTGCCCCTTATTTGTCTCCACCCACATTAAGTTCTGAAGTTTTTCAGAATTTTGCTAATCTTTTATTAAGGGCATGTTTGAAATAACTTTCGAAGTGAAGTCATCCTAAACACCGATAAGAAATAAGTATGGGCCCTTGCCAACCCTGATTGCACTACGAAGTTAAAATTATACAGTCCCGGTCGGGTTTCTTGAGATTATTTTGGGGTTAAAATTCCAGCATGAGGGCATAGAATTTTGGGGAGTGATACAGACCAAATAACTATATCGATATTATGTAGAATGAAGAAATGAAAAAGGGCTAGTATTTTAGGAACTTTGAACCTTCTTCTTGAGTTCTTTTTTTTCAAGCTTAAACCAACTAAACTATTACCTACTTCAATCTCCTTCCCCTCCTAAAAAAACCTCCCTAATGATATTTCTGGTTTCTTCTAGCCTGACAACATTCCTAACAGAAACCAAGGAGTTTGTGAAGACAGAAATCTTTTGAGAGTTTTTGTGATTTTGTACATTCTATGGTCAATTTGATGGAACGGCCAACTAGGATATTTATTTATACTGGCCAACTAGGCGAACATTGTTCAAACTTCTTTTCTTTTGTTTTCACCCAAATATAAGAAGTGTTTCATTACTAATGGAATGAGGACATGTTACACAACCCAATATCTTTGCAAGAAAGCGCCTATGAACTATCTTCTATTTCGTTGTATTCTCTTTTTCTGACCCATAATAGGTAACTTTTATTGGTCTTCCAGGCTGTTTTCTTGTTTCTTGAACTTGAGCATTGATTGACATAGATATACTAGTACTTACAGGTATTTGTACAGAGGGTTGTCAACTGGTGATCGCCCCACATGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAAGGCTGGCTTAGGCTGCATTCTCCGTGCCCTTGCAGATACTATCAACACAGTTTGATTTTCCTTAACTTGACAGAACACTGCGAGCCCTCCCCTCTTTGGCCGATGTCTAAAATCATATTATTTTCTCTCAGTGTATGTGAAATTGCTTTTCAAAGAATGTTTGTATTAAGCTGAGTAGACGTCTATATCTGTCACATTATATTAGAAAAAACAGGTACTGAATTTCATTGAGTTCAGGATACTTTGAATTGCATTATTTTGAAGAACGTGTAAGTATTGTTATTTGTTTGGCTAGATTGGAAGGGACCAAAATATGTATGCCTCATTTATTCGTTCAGGATTATACACAACTTGTAGGAATTACTTTCCTACTTCAAGAAATATGACTCCC

mRNA sequence

TTTTCGTTTCTCATTATCTTCGTTTCTGCTGCTGCCGTTGCTAGTCGCCGGTCGTCGGTACGCCCCCACCGCCACGTTTTTTTTCCTTCTCTTCTTATATCCTTCCCTGCTGCAACCTCGCGCCACCATGGGGTTTCCTAACAGAGGCTAAGTTCGAGGAAATTCTACTGAAGGTTGGGTGATAGGCGAAAATGTCAGATGCATTTGTGGGAGCAGATAATGCCGAAGCCATAATCACTAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTCTAAAACAGTCGAAGCTCTAAAAACTGCTCTCGAAGGTTCGCCTCCGAATACACGAGATGAGCGCTGCAAGTCGGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGACGTAGATGGGATGTTTTCTTCGTTGGATCCGGAGTATTATGATATCCTAATGAAGTATTTGTACAGAGGGTTGTCAACTGGTGATCGCCCCACATGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAAGGCTGGCTTAGGCTGCATTCTCCGTGCCCTTGCAGATACTATCAACACAGTTTGATTTTCCTTAACTTGACAGAACACTGCGAGCCCTCCCCTCTTTGGCCGATGTCTAAAATCATATTATTTTCTCTCAGTGTATGTGAAATTGCTTTTCAAAGAATGTTTGTATTAAGCTGAGTAGACGTCTATATCTGTCACATTATATTAGAAAAAACAGGTACTGAATTTCATTGAGTTCAGGATACTTTGAATTGCATTATTTTGAAGAACGTGTAAGTATTGTTATTTGTTTGGCTAGATTGGAAGGGACCAAAATATGTATGCCTCATTTATTCGTTCAGGATTATACACAACTTGTAGGAATTACTTTCCTACTTCAAGAAATATGACTCCC

Coding sequence (CDS)

ATGTCAGATGCATTTGTGGGAGCAGATAATGCCGAAGCCATAATCACTAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTCTAAAACAGTCGAAGCTCTAAAAACTGCTCTCGAAGGTTCGCCTCCGAATACACGAGATGAGCGCTGCAAGTCGGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGACGTAGATGGGATGTTTTCTTCGTTGGATCCGGAGTATTATGATATCCTAATGAAGTATTTGTACAGAGGGTTGTCAACTGGTGATCGCCCCACATGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAAGGCTGGCTTAGGCTGCATTCTCCGTGCCCTTGCAGATACTATCAACACAGTTTGA

Protein sequence

MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRALADTINTV
Homology
[Close]
BLAST of Carg06045 vs. NCBI nr
Match: XP_022922896.1 (actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita moschata] >XP_022922905.1 actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita moschata])

HSP 1 Score: 269.6 bits (688), Expect = 5.6e-69
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120
           VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120

Query: 121 CILRALADTINTV 134
           CILRALADTINTV
Sbjct: 121 CILRALADTINTV 133

[Close]
BLAST of Carg06045 vs. NCBI nr
Match: XP_022989961.1 (actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita maxima] >XP_023544147.1 actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita pepo subsp. pepo] >XP_023544156.1 actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 4.7e-68
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0 

Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFV ADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120
           VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120

Query: 121 CILRALADTINTV 134
           CILRALADTINTV
Sbjct: 121 CILRALADTINTV 133

[Close]
BLAST of Carg06045 vs. NCBI nr
Match: XP_022922855.1 (actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922865.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922874.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922881.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922889.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata])

HSP 1 Score: 263.1 bits (671), Expect = 5.2e-67
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0 

Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILM---KYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120
           VVHRALMAIKDVDGMFSSLDPEYYDILM   +YLYRGLSTGDRPTCDQCLRIHEKLTEKA
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMNTYRYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120

Query: 121 GLGCILRALADTINTV 134
           GLGCILRALADTINTV
Sbjct: 121 GLGCILRALADTINTV 136

[Close]
BLAST of Carg06045 vs. NCBI nr
Match: XP_022989957.1 (actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_022989958.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_022989959.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_022989960.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_023544102.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544112.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544120.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544130.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544139.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.0 bits (663), Expect = 4.4e-66
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = 0 

Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFV ADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILM---KYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120
           VVHRALMAIKDVDGMFSSLDPEYYDILM   +YLYRGLSTGDRPTCDQCLRIHEKLTEKA
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMNTYRYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120

Query: 121 GLGCILRALADTINTV 134
           GLGCILRALADTINTV
Sbjct: 121 GLGCILRALADTINTV 136

[Close]
BLAST of Carg06045 vs. NCBI nr
Match: XP_010089302.1 (actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 258.1 bits (658), Expect = 1.7e-65
Identity = 126/132 (95.45%), Postives = 130/132 (98.48%), Query Frame = 0 

Query: 2   SDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIV 61
           +DAFV ADNAEAIITRIEHKSRKIESLLKQSK VEALKTALEGSPPNTRDERCKSANWIV
Sbjct: 4   TDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIV 63

Query: 62  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGC 121
           VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTE+AGLGC
Sbjct: 64  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC 123

Query: 122 ILRALADTINTV 134
           ILR+LADT+NTV
Sbjct: 124 ILRSLADTVNTV 135

[Close]
BLAST of Carg06045 vs. TAIR10
Match: AT4G01710.1 (ARP2/3 complex 16 kDa subunit (p16-Arc))

HSP 1 Score: 232.3 bits (591), Expect = 1.8e-61
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0 

Query: 5   FVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHR 64
           FV ADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVHR
Sbjct: 4   FVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVHR 63

Query: 65  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 124
           ALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTE+AGLGCILR
Sbjct: 64  ALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILR 123

Query: 125 ALADTINTV 134
            L DTINTV
Sbjct: 124 CLTDTINTV 132

[Close]
BLAST of Carg06045 vs. TAIR10
Match: AT5G65274.1 (ARP2/3 complex 16 kDa subunit (p16-Arc))

HSP 1 Score: 213.8 bits (543), Expect = 6.6e-56
Identity = 104/130 (80.00%), Postives = 114/130 (87.69%), Query Frame = 0 

Query: 4   AFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVH 63
           AFV ADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSANWIVVH
Sbjct: 6   AFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSANWIVVH 65

Query: 64  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCIL 123
           RA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTE+AGLGCIL
Sbjct: 66  RAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAGLGCIL 125

Query: 124 RALADTINTV 134
           R L+DT NTV
Sbjct: 126 RCLSDTTNTV 135

[Close]
BLAST of Carg06045 vs. Swiss-Prot
Match: sp|Q9M117|ARC5A_ARATH (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 232.3 bits (591), Expect = 3.2e-60
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0 

Query: 5   FVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHR 64
           FV ADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVHR
Sbjct: 4   FVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVHR 63

Query: 65  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 124
           ALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTE+AGLGCILR
Sbjct: 64  ALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILR 123

Query: 125 ALADTINTV 134
            L DTINTV
Sbjct: 124 CLTDTINTV 132

[Close]
BLAST of Carg06045 vs. Swiss-Prot
Match: sp|B3H6Y2|ARC5B_ARATH (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-54
Identity = 104/130 (80.00%), Postives = 114/130 (87.69%), Query Frame = 0 

Query: 4   AFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVH 63
           AFV ADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSANWIVVH
Sbjct: 6   AFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSANWIVVH 65

Query: 64  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCIL 123
           RA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTE+AGLGCIL
Sbjct: 66  RAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAGLGCIL 125

Query: 124 RALADTINTV 134
           R L+DT NTV
Sbjct: 126 RCLSDTTNTV 135

[Close]
BLAST of Carg06045 vs. Swiss-Prot
Match: sp|O15511|ARPC5_HUMAN (Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 24  KIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 83
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 84  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRAL 127
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]
BLAST of Carg06045 vs. Swiss-Prot
Match: sp|Q5R516|ARPC5_PONAB (Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=2 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 24  KIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 83
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 84  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRAL 127
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]
BLAST of Carg06045 vs. Swiss-Prot
Match: sp|Q4KLF8|ARPC5_RAT (Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus OX=10116 GN=Arpc5 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 24  KIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 83
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 84  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRAL 127
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]
BLAST of Carg06045 vs. TrEMBL
Match: tr|W9R3V7|W9R3V7_9ROSA (Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484_021833 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.1e-65
Identity = 126/132 (95.45%), Postives = 130/132 (98.48%), Query Frame = 0 

Query: 2   SDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIV 61
           +DAFV ADNAEAIITRIEHKSRKIESLLKQSK VEALKTALEGSPPNTRDERCKSANWIV
Sbjct: 4   TDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIV 63

Query: 62  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGC 121
           VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTE+AGLGC
Sbjct: 64  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC 123

Query: 122 ILRALADTINTV 134
           ILR+LADT+NTV
Sbjct: 124 ILRSLADTVNTV 135

[Close]
BLAST of Carg06045 vs. TrEMBL
Match: tr|A0A1S3B407|A0A1S3B407_CUCME (Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485501 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.2e-64
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 5   FVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHR 64
           FV ADNAEAIITRIEHKSRKIESLLKQSK VEALKTALEGSPPNTRDERCKSANWIVVHR
Sbjct: 7   FVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVHR 66

Query: 65  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 124
           ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTE+AGLGCILR
Sbjct: 67  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILR 126

Query: 125 ALADTINTV 134
           +LADTINTV
Sbjct: 127 SLADTINTV 135

[Close]
BLAST of Carg06045 vs. TrEMBL
Match: tr|A0A0A0KD59|A0A0A0KD59_CUCSA (Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G008040 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 7.9e-64
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 5   FVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHR 64
           FV ADNAEAIITRIEHKSRKIESLLKQ K VEALKTALEGSPPNTRDERCKSANWIVVHR
Sbjct: 7   FVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSANWIVVHR 66

Query: 65  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 124
           ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTE+AGLGCILR
Sbjct: 67  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILR 126

Query: 125 ALADTINTV 134
           +LADT+NTV
Sbjct: 127 SLADTVNTV 135

[Close]
BLAST of Carg06045 vs. TrEMBL
Match: tr|A0A1U8A223|A0A1U8A223_NELNU (Actin-related protein 2/3 complex subunit 5 OS=Nelumbo nucifera OX=4432 GN=LOC104598438 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 122/131 (93.13%), Postives = 127/131 (96.95%), Query Frame = 0 

Query: 3   DAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVV 62
           + FV ADNAEAIITRIEHKSRKIESLLKQSK VEALKTALEGSPP TRDERCKSANWIVV
Sbjct: 5   EEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPKTRDERCKSANWIVV 64

Query: 63  HRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCI 122
           HRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGL+TGDRPTCDQCLRIHEKLTE+AGLGCI
Sbjct: 65  HRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLATGDRPTCDQCLRIHEKLTERAGLGCI 124

Query: 123 LRALADTINTV 134
           LRALADT+NTV
Sbjct: 125 LRALADTVNTV 135

[Close]
BLAST of Carg06045 vs. TrEMBL
Match: tr|A0A2C9WPJ0|A0A2C9WPJ0_MANES (Actin-related protein 2/3 complex subunit 5 OS=Manihot esculenta OX=3983 GN=MANES_01G272200 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.4e-63
Identity = 123/129 (95.35%), Postives = 125/129 (96.90%), Query Frame = 0 

Query: 5   FVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHR 64
           FV ADNAEAIITRIEHKSRKIESLLKQ K VEALKTALEGSPPNTRDERCKSANW+VVHR
Sbjct: 7   FVEADNAEAIITRIEHKSRKIESLLKQFKPVEALKTALEGSPPNTRDERCKSANWLVVHR 66

Query: 65  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 124
           A+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR
Sbjct: 67  AIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 126

Query: 125 ALADTINTV 134
           ALADT NTV
Sbjct: 127 ALADTANTV 135

The following BLAST results are available for this feature:
BLAST of Carg06045 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922896.15.6e-69100.00actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita moschata] >XP... [more]
XP_022989961.14.7e-6899.25actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita maxima] >XP_0... [more]
XP_022922855.15.2e-6797.06actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP... [more]
XP_022989957.14.4e-6696.32actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_0... [more]
XP_010089302.11.7e-6595.45actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin... [more]
BLAST of Carg06045 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G01710.11.8e-6188.37ARP2/3 complex 16 kDa subunit (p16-Arc)[more]
AT5G65274.16.6e-5680.00ARP2/3 complex 16 kDa subunit (p16-Arc)[more]
BLAST of Carg06045 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M117|ARC5A_ARATH3.2e-6088.37Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=... [more]
sp|B3H6Y2|ARC5B_ARATH1.2e-5480.00Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=... [more]
sp|O15511|ARPC5_HUMAN1.5e-0932.38Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=... [more]
sp|Q5R516|ARPC5_PONAB1.5e-0932.38Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=... [more]
sp|Q4KLF8|ARPC5_RAT1.5e-0932.38Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus OX=10116 GN=Arp... [more]
BLAST of Carg06045 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|W9R3V7|W9R3V7_9ROSA1.1e-6595.45Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484... [more]
tr|A0A1S3B407|A0A1S3B407_CUCME1.2e-6496.90Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485... [more]
tr|A0A0A0KD59|A0A0A0KD59_CUCSA7.9e-6495.35Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G... [more]
tr|A0A1U8A223|A0A1U8A223_NELNU1.0e-6393.13Actin-related protein 2/3 complex subunit 5 OS=Nelumbo nucifera OX=4432 GN=LOC10... [more]
tr|A0A2C9WPJ0|A0A2C9WPJ0_MANES1.4e-6395.35Actin-related protein 2/3 complex subunit 5 OS=Manihot esculenta OX=3983 GN=MANE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0034314Arp2/3 complex-mediated actin nucleation
GO:0030833regulation of actin filament polymerization
Vocabulary: Cellular Component
TermDefinition
GO:0005885Arp2/3 protein complex
GO:0015629actin cytoskeleton
Vocabulary: INTERPRO
TermDefinition
IPR036743ARPC5_sf
IPR006789ARPC5
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0015629 actin cytoskeleton
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06045-RACarg06045-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006789Actin-related protein 2/3 complex subunit 5PFAMPF04699P16-Arccoord: 15..129
e-value: 3.1E-23
score: 82.8
IPR006789Actin-related protein 2/3 complex subunit 5PANTHERPTHR12644ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARCcoord: 9..133
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilyGENE3DG3DSA:1.25.40.190coord: 2..131
e-value: 1.1E-28
score: 102.3
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilySUPERFAMILYSSF69103Arp2/3 complex 16 kDa subunit ARPC5coord: 7..129
NoneNo IPR availablePANTHERPTHR12644:SF0ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 5coord: 9..133