ClCG11G006910 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G006910
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Actin-related protein 2/3 complex subunit 5
Location	CG_Chr11 : 7689336 .. 7694128 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCAGGGTTTGATTATCGGTTCAGGTCCGACCAAGCTGAACCGACCTTCCCCTGCCGCATAAACATTGAAAGAAAGGATCGTGAAAATCAACATCATAGGCAGATTGCGCTGATTTTAGGTCCGATTTCATTCATACAACTGTTGGATTATTGATTTGTACTGGTATGATCAGTTTTCAGTTAAGCTCGAGAAAATCCTACTGGAAGTAGGGTGATAGCGGAAGGCTAAAATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTAATGAATTTACCTGCTCTTTGATTCATAGGATTTAAATTCATTTAGCTCCTCTTATTGAAGACGCCCTTAATTTGTCAATTTTTTTATTCGTAAAAGGTCTAGACCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGGTATCATTTCTTTCTCCCTGCCTACGATCAATTTGGTTTCTGATCTGTCGTGTTTTGTTCAGAGCTAATGGCGGTGTAGAATCCATATTAATGTTGTTTCTATACCATGGGTTTTCCTTGCATTTTTTCTGTGCTAATTGATTTTATTTTTATTATTTAATTTGTGGGTAATTCTACAAATATTAAGGGAAGTTATTGGAGAATCCCTGTTTTTCTGTTATCATTAAATCTATCTGTTATGTTTTTCCTACATTTTCTCAATGATGAGGCCAATTAGGATTGCTGGATGTTGATTTAATTTTTGGAAAGAGTTTGCTGTATTTGTTTGCAGCTACTCGATATGAATAGGCTTGCTGTTTCTTTCATGTTTATGTTTTGTCGGTCTGCTTGACGTGGGAGAATGAGTTAATCTGATGTGATTATTTGGACTTCTCCAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTGAGTTTGTCCGGAATTTAACTGCTAAAATATTAATTCTTATTGTTTCTACTTATCTCAGCAGGAGCCTAAAGTTGGTCATTCTAATTGTTTTTCTTTAATTAATTCCAAGTTTACTTTCTGATATTATTCTTTTGCTATGAAATTTATATTCAAGTTGTTGGTTTCATCCTACCATGAGTTATGCAAACATAAATACATTCTATTTTCTTTTTTCCCGGTCTCATCAAATTTCTACAGCTAACTGTACTCAGTCAGTAGGGCATGTGGTAGTCTTTAGATGCTTGGAAGATTGCTTCGGTGATATGAATTTATTTTCCAGCGAGGAGTCTTTGTCAGAGTGGAATCTCTCTAACCATCTTGCTAGAAAGATCTCATCACATCTTCTGAATTTAGCAAGTCATGTCCAACCTCTCTTTATAGACCTGCCTCAAAATTTGTTATTTTTGTCCTATATTATTATGTGTCTATTTAGTACGCTTAACAAGCGTTCAATTCAATAAAGGTTGGACATATATTGACTTTGAAGTTTTAATAACTAGTCTCTAACACATATCTATTGGCTAACAAATATTTAATACGTGTCCAACAAGTGTGGAGTATCCAAATGTTAAACATGGACACACTAGCCAAACTAAAGTGTTTCTGCTTCTTAGGGCCCTACCTTCCAGCAGTCTCTCAATTTGTTTTCCAAAACATTCCCTAATATTCAAGGATTATGAACACCAACAAGAAATAAGTGAGGATGCTTGACAACACTGATTTGGCCAATGTTAATCCTCCCCTTTGGAACATCAGGACTGTTTTCAAGTGGATCATTTATCTGAGATTAATGACAGGGTTTCAAAAGCCCATGTCCTTGATTGTCCTCCACTCATCACATAGAAGGCTTTTTCTTCTGAGTGTATGCTTGATCCTCTTGAATCTCTAGTACCACCAAGAATATTTGTTCATGAGATTTTATAGCACTTGCTTTTTTTCCTTTTTTAAAAGGATTCACCAACAGAGAAATGATGACTAGAATAGCTGGAAACCAGCCAAAAGAATTAAACAAAAAGCTTGCATTTTTAAGCATGGTTGCAATGAGGAAAAATATGATCTTTGTTTTCTTCTTACTATATGCATATGGGGCATACCAACTGGGCGAAATGGAGGATTAGGTTTCTAGCTTGGACTTTTATCTTGGGTACTATACTAATAACACCGTGGAGAAGCTCCCATATGGACCAGGAGTGTAGGGAAACTTTGTGAGAGTCATTGAGGCATTTTAGGAAATTTCTGGACCTTTTTTTGCAGCTTGCACTAAGACCAGAAATCATCTCGAGTTTCCAAAGAGAAAACATATAGAAGATTTGAAAAATTACGCCAAATGGTGTGTTTTTCAGTAGAGTTTCTCCAAAGCCACTTGGCCATGAACGTGATATTTCTTTGCTTGAGATGACCAAGACTAAACTCTCAAAGATGAAGAGGAAGCTTACTCTTTTCCAAATCACAATGTATGATCCACCTTCAGTAGTGGATCCCTTCAGTTCCAGAAGTCCTGGAAAGACATTAGCGTGTTTAAAATTTCTAAACATGAACATCACTTGTTGATTCTTTTGGTTCGTTTCTTTCTCCTATATCGACAAGGGGATTCTGTTTCTTTCTCATTTGGTTTCTGTTGGCAGTTGTCCAATAGGAAAACGACGGAGGTGGCCTCTATTCTTTTTTTAATGAGGATTTTGACTTTAGGCTTGCGAGAAGGGATGTTTATGTTTGGATTACTAACCCGTTGGAGGGCATCTCTTGTAAGTCGTTCTTTAGGATTTTATTGGATCCTTGTCCTGTTGTTGACGTGTTATGGAAGATTAAGATTCCAAAGAAAGTTAAGTTCTTTTCATGGCAAGTTTTGCTTAGTTGTATGAATATGATGGATAGGATTTTGAGAAAGATGGCTTCATTAATAGGTCCTTTTTGTTGTATCCTTTGTTGGAAGGCAGAGGAAAACCTAGATCACCTTCTTTGGGAGTGTCAGTTTGTGGATCAGTTTGGCATGGTTTCTTGCAGGAGTTTGATTTTTCACTTACTCTCCATAGAGATGTTTAGTTGATGATGGGGGAGTTCCTCCTCCATCCACCTTTCAAAGAGATAGGTCATTTTCTTTGGTTCGTGGGGGTGTGCTTTATTGTGGGATCTTTGGGGGAAGAGGAACAATAGAGTGTTTCGGGGTGAGAAGAGGGACCCTAGCGAGGTTTGGTTTTTGGTGAGGAACAATAGAACTTTGGGCTTCGAAAGGGTGTGCTTTATTGTGGGATCTTTGGGGGAAGAGGAACAATAGAGTGTTTCGGGGTGAGAAGGACCCTAGCGAGGTTTGGTTCTTGGTGAGGAACAATAGAACTTTGGGCTTCGATTTCGAAGGCTTTTTGTAATACTTTCTAGGCAAATTTGTCTCCTACAAAAAAGATTATAGTAGACGAATTTAAATTAGGCTCTTTCTTCATTAGATTGTGGCTTTGTGACTTCATGGAAAAAATTATTCTTCCACCTTCAGTTTTCGACAGGCTTAATTATTCAGCCTTTTCAATGTATCCTTATGCCTTCCCAGGAACCTCGAAGATTGGTTATATGAAGTGTTCTTCAATCGGTGGTTGAACGGGGAAACTAGACATCTTCGGACATGCACATTTTGACTGCCTTACACAAATAGTTATTTGATAACCATAGTGGTTCTTTTATCAAGCAAGATTGGAACTCCGAAAGGTGCTCATGTAATTGTTGTCTTTGGTAGGGTTTTCATTGCCCTCCTCCTCTAGGTTGTATTCCTTTCGTGTTTTGAATATATTGTTTCTAATATGTACATATATAAATCACGAAAAAATTTCAAGGATAGGGTTCCTGAAATTTTGAGATCTCAGGTTACAATTTTGGTAGCCCCAGACAAGGAATTGACCTACATGCTACATCCAAAACAGTTAAACCATATCTTGAATTATGGAAATAGGTTTCATCATGGTTGATTAGTTTTAGAGGACGCGTGCACAAGCCAATGGTTTCTTCTAAGAGTTAGATAATATTGAATAAAGCCCATATTCTCAGTATTCATCGCTGAAAAAGGATTCATATTGAAGAGAGATATCATCCTTTCCAACTTGAAAGCCATCCGTATAAAACCTGTGAGTAAGGAGGATGAAGCCATTAGACACTAAAATTAATAGGAAGGGTAGAAAAGATTTCCATGAACTCATCTCAAGGGTAATCTTTCTAGGCTTGCTGCTAGTATAATTCGCGTCCTTCAACGAGTGCGAAAACAACTTCAAGATAGTGTCAAGAAAGTTCCGCTAATCAAGACTTCACGGGATTTTGAATCCACTGCTTGAGGACATGATATGTGTTGTGGCAAACACTTCATCTATTTTGTTTTTTAAATATTATGCCACACCAATATTTGATGGGTTGTCTATGCTGTTTTTCTTGTAGTTTGTTGCCAAAACTTGAGCATTTATATGTAGAACTATTTGCAGGTACTTGTACAGAGGGTTGTCAACTGGTGATCGTCCTACATGTGATCAATGTCTCAGGATACATGAAAAATTGACAGAAAGGGCTGGCTTAGGTTGCATTCTCCGTTCTCTTGCAGATACTATTAATACCGTTTGAACTTTTGGCTAATGAAATGTTGGAAATATTATTATTCTCGCATATATATATCATACTCAGAGCTGAAATGTACTCAATTCTCTCTAATTTTGACACCTGTAAATTGCTTTTCAGAT

mRNA sequence

AAACCCAGGGTTTGATTATCGGTTCAGGTCCGACCAAGCTGAACCGACCTTCCCCTGCCGCATAAACATTGAAAGAAAGGATCGTGAAAATCAACATCATAGGCAGATTGCGCTGATTTTAGGTCCGATTTCATTCATACAACTGTTGGATTATTGATTTGTACTGGTATGATCAGTTTTCAGTTAAGCTCGAGAAAATCCTACTGGAAGTAGGGTGATAGCGGAAGGCTAAAATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAGACCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTACTTGTACAGAGGGTTGTCAACTGGTGATCGTCCTACATGTGATCAATGTCTCAGGATACATGAAAAATTGACAGAAAGGGCTGGCTTAGGTTGCATTCTCCGTTCTCTTGCAGATACTATTAATACCGTTTGAACTTTTGGCTAATGAAATGTTGGAAATATTATTATTCTCGCATATATATATCATACTCAGAGCTGAAATGTACTCAATTCTCTCTAATTTTGACACCTGTAAATTGCTTTTCAGAT

Coding sequence (CDS)

ATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAGACCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTACTTGTACAGAGGGTTGTCAACTGGTGATCGTCCTACATGTGATCAATGTCTCAGGATACATGAAAAATTGACAGAAAGGGCTGGCTTAGGTTGCATTCTCCGTTCTCTTGCAGATACTATTAATACCGTTTGA

Protein sequence

MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

Homology

[Close]

BLAST of ClCG11G006910 vs. Swiss-Prot
Match: ARC5A_ARATH (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 235.0 bits (598), Expect = 5.0e-61
Identity = 116/130 (89.23%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 6   EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVH 65
           EFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3   EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCIL 125
           RALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCIL
Sbjct: 63  RALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 122

Query: 126 RSLADTINTV 136
           R L DTINTV
Sbjct: 123 RCLTDTINTV 132

[Close]

BLAST of ClCG11G006910 vs. Swiss-Prot
Match: ARC5B_ARATH (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.1e-55
Identity = 106/135 (78.52%), Postives = 114/135 (84.44%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

[Close]

BLAST of ClCG11G006910 vs. Swiss-Prot
Match: ARPC5_PONAB (Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii GN=ARPC5 PE=2 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 9.8e-09
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1


Query: 26  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of ClCG11G006910 vs. Swiss-Prot
Match: ARPC5_RAT (Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus GN=Arpc5 PE=1 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 9.8e-09
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1


Query: 26  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of ClCG11G006910 vs. Swiss-Prot
Match: ARPC5_HUMAN (Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 9.8e-09
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1


Query: 26  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of ClCG11G006910 vs. TrEMBL
Match: A0A0A0KD59_CUCSA (Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus GN=Csa_6G008040 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.5e-68
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MATT +FVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of ClCG11G006910 vs. TrEMBL
Match: W9R3V7_9ROSA (Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis GN=L484_021833 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.5e-67
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA T  FVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of ClCG11G006910 vs. TrEMBL
Match: A5AQ06_VITVI (Actin-related protein 2/3 complex subunit 5 OS=Vitis vinifera GN=VIT_15s0021g01870 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.6e-66
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA T EFVEADNAEAIITRIEHKSRKIESLLKQ +P+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTKEFVEADNAEAIITRIEHKSRKIESLLKQHKPIEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVD +FSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAMMAIKDVDSLFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of ClCG11G006910 vs. TrEMBL
Match: M5WAX3_PRUPE (Actin-related protein 2/3 complex subunit 5 OS=Prunus persica GN=PRUPE_ppa013215mg PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.1e-66
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA T EFVEADNAEAIITRIE KSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTEEFVEADNAEAIITRIEQKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI+VHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIMVHRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of ClCG11G006910 vs. TrEMBL
Match: A0A061DUG1_THECC (Actin-related protein 2/3 complex subunit 5 OS=Theobroma cacao GN=TCM_005690 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 8.0e-66
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA   +FVEADNAEAIITRIEHKSRKIESLLKQ++PVEALKTALEGSPP TRDERCKSAN
Sbjct: 1   MAGVEKFVEADNAEAIITRIEHKSRKIESLLKQNKPVEALKTALEGSPPMTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of ClCG11G006910 vs. TAIR10
Match: AT4G01710.1 (AT4G01710.1 ARP2/3 complex 16 kDa subunit (p16-Arc))

HSP 1 Score: 235.0 bits (598), Expect = 2.8e-62
Identity = 116/130 (89.23%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 6   EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVH 65
           EFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3   EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCIL 125
           RALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCIL
Sbjct: 63  RALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 122

Query: 126 RSLADTINTV 136
           R L DTINTV
Sbjct: 123 RCLTDTINTV 132

[Close]

BLAST of ClCG11G006910 vs. TAIR10
Match: AT5G65274.1 (AT5G65274.1 ARP2/3 complex 16 kDa subunit (p16-Arc))

HSP 1 Score: 215.3 bits (547), Expect = 2.3e-56
Identity = 106/135 (78.52%), Postives = 114/135 (84.44%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

[Close]

BLAST of ClCG11G006910 vs. NCBI nr
Match: gi|659081508|ref|XP_008441367.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo])

HSP 1 Score: 268.1 bits (684), Expect = 8.5e-69
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of ClCG11G006910 vs. NCBI nr
Match: gi|1009143859|ref|XP_015889484.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba])

HSP 1 Score: 265.4 bits (677), Expect = 5.5e-68
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA TGEFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of ClCG11G006910 vs. NCBI nr
Match: gi|449441438|ref|XP_004138489.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-67
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MATT +FVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of ClCG11G006910 vs. NCBI nr
Match: gi|703072505|ref|XP_010089302.1| (Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 263.5 bits (672), Expect = 2.1e-67
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA T  FVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of ClCG11G006910 vs. NCBI nr
Match: gi|359489190|ref|XP_003633894.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Vitis vinifera])

HSP 1 Score: 258.8 bits (660), Expect = 5.1e-66
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
           MA T EFVEADNAEAIITRIEHKSRKIESLLKQ +P+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTKEFVEADNAEAIITRIEHKSRKIESLLKQHKPIEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVD +FSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAMMAIKDVDSLFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

The following BLAST results are available for this feature:

BLAST of ClCG11G006910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARC5A_ARATH	5.0e-61	89.23	Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana GN=ARPC5A P...	[more]
ARC5B_ARATH	4.1e-55	78.52	Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana GN=ARPC5B P...	[more]
ARPC5_PONAB	9.8e-09	32.38	Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii GN=ARPC5 PE=2 SV=3	[more]
ARPC5_RAT	9.8e-09	32.38	Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus GN=Arpc5 PE=1 S...	[more]
ARPC5_HUMAN	9.8e-09	32.38	Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3	[more]

BLAST of ClCG11G006910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD59_CUCSA	8.5e-68	96.30	Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus GN=Csa_6G008040 P...	[more]
W9R3V7_9ROSA	1.5e-67	96.30	Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis GN=L484_021833 PE...	[more]
A5AQ06_VITVI	3.6e-66	93.33	Actin-related protein 2/3 complex subunit 5 OS=Vitis vinifera GN=VIT_15s0021g018...	[more]
M5WAX3_PRUPE	6.1e-66	94.07	Actin-related protein 2/3 complex subunit 5 OS=Prunus persica GN=PRUPE_ppa013215...	[more]
A0A061DUG1_THECC	8.0e-66	94.07	Actin-related protein 2/3 complex subunit 5 OS=Theobroma cacao GN=TCM_005690 PE=...	[more]

BLAST of ClCG11G006910 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01710.1	2.8e-62	89.23	ARP2/3 complex 16 kDa subunit (p16-Arc)	[more]
AT5G65274.1	2.3e-56	78.52	ARP2/3 complex 16 kDa subunit (p16-Arc)	[more]

BLAST of ClCG11G006910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081508\|ref\|XP_008441367.1\|	8.5e-69	98.52	PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo]	[more]
gi\|1009143859\|ref\|XP_015889484.1\|	5.5e-68	96.30	PREDICTED: actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba]	[more]
gi\|449441438\|ref\|XP_004138489.1\|	1.2e-67	96.30	PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis sativus]	[more]
gi\|703072505\|ref\|XP_010089302.1\|	2.1e-67	96.30	Actin-related protein 2/3 complex subunit 5 [Morus notabilis]	[more]
gi\|359489190\|ref\|XP_003633894.1\|	5.1e-66	93.33	PREDICTED: actin-related protein 2/3 complex subunit 5A [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006789	ARPC5

Vocabulary: **Cellular Component**
Term	Definition
GO:0005885	Arp2/3 protein complex
GO:0015629	actin cytoskeleton

Vocabulary: **Biological Process**
Term	Definition
GO:0030833	regulation of actin filament polymerization
GO:0034314	Arp2/3 complex-mediated actin nucleation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0000228	nuclear chromosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0051015	actin filament binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G006910.1	ClCG11G006910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006789	Actin-related protein 2/3 complex subunit 5	GENE3D	G3DSA:1.25.40.190		coord: 11..131 score: 2.5
IPR006789	Actin-related protein 2/3 complex subunit 5	PANTHER	PTHR12644	ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC	coord: 6..135 score: 3.0
IPR006789	Actin-related protein 2/3 complex subunit 5	PFAM	PF04699	P16-Arc	coord: 14..131 score: 2.5
IPR006789	Actin-related protein 2/3 complex subunit 5	unknown	SSF69103	Arp2/3 complex 16 kDa subunit ARPC5	coord: 6..131 score: 1.96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G006910	Csa6G008040	Cucumber (Chinese Long) v2	cuwcgB429
ClCG11G006910	MELO3C008212	Melon (DHL92) v3.5.1	mewcgB272
ClCG11G006910	Cla006524	Watermelon (97103) v1	wcgwmB108
ClCG11G006910	Cla97C11G213860	Watermelon (97103) v2	wcgwmbB065
ClCG11G006910	Bhi04G001964	Wax gourd	wcgwgoB158
ClCG11G006910	CSPI06G01030	Wild cucumber (PI 183967)	cpiwcgB450
ClCG11G006910	Cucsa.136000	Cucumber (Gy14) v1	cgywcgB224
ClCG11G006910	CmaCh04G029710	Cucurbita maxima (Rimu)	cmawcgB630
ClCG11G006910	CmoCh04G030890	Cucurbita moschata (Rifu)	cmowcgB632
ClCG11G006910	Lsi03G003770	Bottle gourd (USVL1VR-Ls)	lsiwcgB226
ClCG11G006910	Cp4.1LG01g25630	Cucurbita pepo (Zucchini)	cpewcgB366
ClCG11G006910	CsGy6G001090	Cucumber (Gy14) v2	cgybwcgB397
ClCG11G006910	MELO3C008212.2	Melon (DHL92) v3.6.1	medwcgB263
ClCG11G006910	Carg06045	Silver-seed gourd	carwcgB0021
ClCG11G006910	CsaV3_6G001140	Cucumber (Chinese Long) v3	cucwcgB452

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G006910	Cucurbita maxima (Rimu)	cmawcgB252
ClCG11G006910	Cucurbita maxima (Rimu)	cmawcgB619
ClCG11G006910	Cucurbita moschata (Rifu)	cmowcgB240
ClCG11G006910	Cucurbita moschata (Rifu)	cmowcgB621
ClCG11G006910	Cucurbita pepo (Zucchini)	cpewcgB159
ClCG11G006910	Cucurbita pepo (Zucchini)	cpewcgB355
ClCG11G006910	Silver-seed gourd	carwcgB0019
ClCG11G006910	Silver-seed gourd	carwcgB0985