Cla006524 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006524
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Actin-related protein 2/3 complex subunit 5 (AHRD V1 ***- A5AQ06_VITVI); contains Interpro domain(s) IPR006789 ARP2/3 complex 16 kDa subunit (p16-Arc)
Location	Chr11 : 855397 .. 856208 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTAATGAATTTACCTGCTCTTTGATTCATAGGATTTAAATTCATTTAGCTCCTCTTATTGAAGACGCCCTTAATTTGTCAATTTTTTTATTCGTAAAAGGTCTAGACCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGGTATCATTTCTTTCTCCCTGCCTACGATCAATTTGGTTTCTGATCTGTCGTGTTTTGTTCAGAGCTAATGGCGGTGTAGAATCCATATTAATGTTGTTTCTATACCATGGGTTTTCCTTGCATTTTTTCTGTGCTAATTGATTTTATTTTTATTATTTAATTTGTGGGTAATTCTACAAATATTAAGGGAAGTTATTGGAGAATCCCTGTTTTTCTGTTATCATTAAATCTATCTGTTATGTTTTTCCTACATTTTCTCAATGATGAGGCCAATTAGGATTGCTGGATGTTGATTTAATTTTTGGAAAGAGTTTGCTGTATTTGTTTGCAGCTACTCGATATGAATAGGCTTGCTGTTTCTTTCATGTTTATGTTTTGTCGGTCTGCTTGACGTGGGAGAATGAGTTAATCTGATGTGATTATTTGGACTTCTCCAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTGA

mRNA sequence

ATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAGACCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTGA

Coding sequence (CDS)

ATGGCGACTACAGGTGAATTTGTAGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAGAGCTTACTTAAACAGTCTAGACCAGTCGAAGCTCTTAAAACTGCTCTCGAAGGTTCCCCTCCAAATACCCGAGATGAACGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTGA

Protein sequence

MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMK

Homology

[Close]

BLAST of Cla006524 vs. Swiss-Prot
Match: ARC5A_ARATH (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-35
Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 6  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVH 65
          EFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3  EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66 RALMAIKDVDGMFSSLDPEYYDILMK 92
          RALMAIKD+DGM ++LD EYYDILMK
Sbjct: 63 RALMAIKDIDGMLNALDVEYYDILMK 88

[Close]

BLAST of Cla006524 vs. Swiss-Prot
Match: ARC5B_ARATH (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-31
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA    FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSAN
Sbjct: 1  MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WIVVHRA+MAIKD++GM +SL  EYYDILMK
Sbjct: 61 WIVVHRAIMAIKDIEGMLNSLTAEYYDILMK 91

[Close]

BLAST of Cla006524 vs. TrEMBL
Match: A0A0A0KD59_CUCSA (Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus GN=Csa_6G008040 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.0e-41
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MATT +FVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WIVVHRALMAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Cla006524 vs. TrEMBL
Match: W9R3V7_9ROSA (Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis GN=L484_021833 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.0e-40
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA T  FVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WIVVHRALMAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Cla006524 vs. TrEMBL
Match: A0A059C433_EUCGR (Actin-related protein 2/3 complex subunit 5 OS=Eucalyptus grandis GN=EUGRSUZ_E01576 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.5e-39
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA T +FVEADNAEAII+RIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 2  MAATVDFVEADNAEAIISRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 61

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WIVVHRA+MAIKD+D +FSSLDPEYYDILMK
Sbjct: 62 WIVVHRAIMAIKDLDALFSSLDPEYYDILMK 92

[Close]

BLAST of Cla006524 vs. TrEMBL
Match: A5AQ06_VITVI (Actin-related protein 2/3 complex subunit 5 OS=Vitis vinifera GN=VIT_15s0021g01870 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.5e-39
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA T EFVEADNAEAIITRIEHKSRKIESLLKQ +P+EALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MAGTKEFVEADNAEAIITRIEHKSRKIESLLKQHKPIEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WIVVHRA+MAIKDVD +FSSLDPEYYDILMK
Sbjct: 61 WIVVHRAMMAIKDVDSLFSSLDPEYYDILMK 91

[Close]

BLAST of Cla006524 vs. TrEMBL
Match: M5WAX3_PRUPE (Actin-related protein 2/3 complex subunit 5 OS=Prunus persica GN=PRUPE_ppa013215mg PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.3e-39
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA T EFVEADNAEAIITRIE KSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MAGTEEFVEADNAEAIITRIEQKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WI+VHRA+MAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIMVHRAIMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Cla006524 vs. NCBI nr
Match: gi|659081508|ref|XP_008441367.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 7.8e-42
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WIVVHRALMAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Cla006524 vs. NCBI nr
Match: gi|1009143859|ref|XP_015889484.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba])

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-41
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA TGEFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WIVVHRA+MAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRAIMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Cla006524 vs. NCBI nr
Match: gi|449441438|ref|XP_004138489.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 8.6e-41
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MATT +FVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WIVVHRALMAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Cla006524 vs. NCBI nr
Match: gi|703072505|ref|XP_010089302.1| (Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA T  FVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1  MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WIVVHRALMAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 91

[Close]

BLAST of Cla006524 vs. NCBI nr
Match: gi|720009004|ref|XP_010258801.1| (PREDICTED: actin-related protein 2/3 complex subunit 5A isoform X1 [Nelumbo nucifera])

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-39
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60
          MA   EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPP TRDERCKSAN
Sbjct: 1  MAGHEEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPKTRDERCKSAN 60

Query: 61 WIVVHRALMAIKDVDGMFSSLDPEYYDILMK 92
          WIVVHRA+MAIKDVDGMFSSLDPEYYDILMK
Sbjct: 61 WIVVHRAIMAIKDVDGMFSSLDPEYYDILMK 91

The following BLAST results are available for this feature:

BLAST of Cla006524 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARC5A_ARATH	1.8e-35	87.21	Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana GN=ARPC5A P...	[more]
ARC5B_ARATH	2.1e-31	74.73	Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana GN=ARPC5B P...	[more]

BLAST of Cla006524 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD59_CUCSA	6.0e-41	95.60	Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus GN=Csa_6G008040 P...	[more]
W9R3V7_9ROSA	1.0e-40	95.60	Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis GN=L484_021833 PE...	[more]
A0A059C433_EUCGR	2.5e-39	91.21	Actin-related protein 2/3 complex subunit 5 OS=Eucalyptus grandis GN=EUGRSUZ_E01...	[more]
A5AQ06_VITVI	2.5e-39	91.21	Actin-related protein 2/3 complex subunit 5 OS=Vitis vinifera GN=VIT_15s0021g018...	[more]
M5WAX3_PRUPE	4.3e-39	92.31	Actin-related protein 2/3 complex subunit 5 OS=Prunus persica GN=PRUPE_ppa013215...	[more]

BLAST of Cla006524 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081508\|ref\|XP_008441367.1\|	7.8e-42	97.80	PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo]	[more]
gi\|1009143859\|ref\|XP_015889484.1\|	3.8e-41	95.60	PREDICTED: actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba]	[more]
gi\|449441438\|ref\|XP_004138489.1\|	8.6e-41	95.60	PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis sativus]	[more]
gi\|703072505\|ref\|XP_010089302.1\|	1.5e-40	95.60	Actin-related protein 2/3 complex subunit 5 [Morus notabilis]	[more]
gi\|720009004\|ref\|XP_010258801.1\|	2.1e-39	93.41	PREDICTED: actin-related protein 2/3 complex subunit 5A isoform X1 [Nelumbo nuci...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006789	ARPC5

Vocabulary: **Cellular Component**
Term	Definition
GO:0005885	Arp2/3 protein complex
GO:0015629	actin cytoskeleton

Vocabulary: **Biological Process**
Term	Definition
GO:0030833	regulation of actin filament polymerization
GO:0034314	Arp2/3 complex-mediated actin nucleation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0051015	actin filament binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU06005	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU28224	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU66530	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006524	Cla006524.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU06005	WMU06005	transcribed_cluster
WMU28224	WMU28224	transcribed_cluster
WMU66530	WMU66530	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006789	Actin-related protein 2/3 complex subunit 5	GENE3D	G3DSA:1.25.40.190		coord: 11..91 score: 4.8
IPR006789	Actin-related protein 2/3 complex subunit 5	PANTHER	PTHR12644	ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC	coord: 6..91 score: 1.7
IPR006789	Actin-related protein 2/3 complex subunit 5	PFAM	PF04699	P16-Arc	coord: 13..91 score: 2.
IPR006789	Actin-related protein 2/3 complex subunit 5	unknown	SSF69103	Arp2/3 complex 16 kDa subunit ARPC5	coord: 6..91 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006524	Cla97C11G213860	Watermelon (97103) v2	wmwmbB362
Cla006524	Csa6G008040	Cucumber (Chinese Long) v2	cuwmB533
Cla006524	MELO3C008212	Melon (DHL92) v3.5.1	mewmB328
Cla006524	ClCG11G006910	Watermelon (Charleston Gray)	wcgwmB108
Cla006524	CSPI06G01030	Wild cucumber (PI 183967)	cpiwmB552
Cla006524	Cucsa.136000	Cucumber (Gy14) v1	cgywmB234
Cla006524	CmaCh04G029710	Cucurbita maxima (Rimu)	cmawmB729
Cla006524	CmoCh04G030890	Cucurbita moschata (Rifu)	cmowmB725
Cla006524	Cp4.1LG01g25630	Cucurbita pepo (Zucchini)	cpewmB457
Cla006524	CsGy6G001090	Cucumber (Gy14) v2	cgybwmB497
Cla006524	MELO3C008212.2	Melon (DHL92) v3.6.1	medwmB325
Cla006524	Carg06045	Silver-seed gourd	carwmB0022
Cla006524	CsaV3_6G001140	Cucumber (Chinese Long) v3	cucwmB558
Cla006524	Bhi04G001964	Wax gourd	wgowmB347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006524	Cucurbita pepo (Zucchini)	cpewmB196
Cla006524	Cucurbita pepo (Zucchini)	cpewmB461
Cla006524	Bottle gourd (USVL1VR-Ls)	lsiwmB277
Cla006524	Silver-seed gourd	carwmB0024
Cla006524	Silver-seed gourd	carwmB1010
Cla006524	Cucurbita maxima (Rimu)	cmawmB283
Cla006524	Cucurbita maxima (Rimu)	cmawmB737
Cla006524	Cucurbita moschata (Rifu)	cmowmB274
Cla006524	Cucurbita moschata (Rifu)	cmowmB731