MELO3C006281 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006281
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cytochrome c oxidase-assembly factor COX23, mitochondrial
Location	chr6 : 2231108 .. 2233100 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTTCTAGGGATCCAGCTCCGCCCTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTACTTTCACTCTCATACTCCCTCTCCATTATTCTCATTTTTTTTTTTTTGTTTTTCTATAATTCTCCGCCAGAAATTTAGGTATCTGTGCTGCTGTTATCTCACAATTTGATTTTGGACTTGTTCTGCGTTGGTTCATTTGAGATTGATTGGGTGCTGCGCATCAATTGTTTTCAGTTTGTGTATTTTATGGTCAAACTCGCGAATTTGTAGTTGGCGATGATCGTGCGAACTCTACTTCTGTTGGCGTTTCTCTGTGCTATGTTACTTGAAAATTTGCTAGTCTGTTTGATTACTTTTCTAGGGTTTCTATTTCCATCGAGTTATGGTTAATTGATGAAGAGTAAGCGAACTTAAATAAATGTATTGGTGACCGTATGATAATCTTAAAAACAAAATAGATTTTGCCTGGGTATTAATTGATAAAACGCTCGTCGGAGTTCTTAGAGTGGCCGTGTTTTGAGTCCACTTACTGTTCTAACTAATGACTATGGAAAATGCTGAAAAGGAGCTTTGACTAGGATTTTGGAGCCGAATGATCATAATCCCCCTTTCCTTGGGGCCAAGTGTCATAGTAGGAATTACTAACGTGGATGGTTCTTCTGCTCCAAATCTAATTAGTCGTCAATCCGATCCAACTTCATTATTTGGCTTATTCTTTGTGCTATATTTATGAGAGGGTTTTAACTTTCTGGATATCCCCGTGTATTTGTTTGATTTAGGATAACGGATTACATATAACACATAACCCCGCATATGGACAGAATAATATTTAAAAAGGTGTTTAATGCGAAAGCCTCGAGCTGGGACTTAAGGCAAGGATAAAGGTCATATACAAATTATTCATGGGAAGCATGCGTTGGTGATGGTTGTTAAGTCATGTGCAAAGTGAACTTGTAATTTGAATTTTTAAATGAGGACTATCGTTATTGATTCCGTTAAAGTGCAGCTTATCTTTGGTGTTCCATGAACCATTGAATGAGAAGTTGGTGCTTAGATTACTAATTTTTGTAGATTTGGAATTTTATTTTTATGTCAGAGAACATTTTGAACTTCTTATCAGAGAAAATTTCCTTTTCCAAATGTTGTAGGTCTTGAGGTAAATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTCGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTGCTCTTAGTTATCACATGAAATTGGAATGGTGGAACATTTTATAACGTGTGGCATTGTTACTGAAAACATATGTGCCCACTATTTACGGGAGTTTGGCTTCTGAGATAATGGTACTGATTGACCAAGGTTGTAATTGCGAATGAGCAGATCCCAAAGAGGCATCAAAACATTAAAATATGATCTTGGTCCTCAGTAAAGTTATATTTTGATCTTTCAAGTTTTAGTAATCTCTATGTCACATACGAAAAAGTGACTACTCATTTTGTGATATCAGATTTGTATGGCAAGTGATGTATTGTATGTCTAATACTGTCTCTTCCATGTGATAACCTCTTATTAATTATACGTTGATCGGCAACAAAAAATAGGACACCGTATTAATGGTAGATTGGATTTGAAGTTCCTGAAGCTTGCGGGTCTAAAATAAAAACTTTCTGGAAACTTGGGATTAAATTTAAAGAATTAAAATTACTCTATGACCTGAAAGATACTATGGCATATAAGAGGAGAAATATTATTGTGATTCATGATACTAAAGAAACTTTAGAGCCTGTGTTAACATTTACTTCCTTGGTTGGTGTAGTAGAGTAGCATAATGCACCAATTCTCTATCAGATGTTGTCTCTGTTTATTAAGTTTCTAACTTGAACGAGATGTGTCTTCTTTCCAGCGGGAAGCTCGGTTGGAACGCAACAAGACACGGTCTTTCTTCTCATGA

mRNA sequence

ATGGCTTCCACTTCTAGGGATCCAGCTCCGCCCTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAGGTAAATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTCGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGGTTGGAACGCAACAAGACACGGTCTTTCTTCTCATGA

Coding sequence (CDS)

ATGGCTTCCACTTCTAGGGATCCAGCTCCGCCCTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAGGTAAATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTCGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGGTTGGAACGCAACAAGACACGGTCTTTCTTCTCATGA

Protein sequence

MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKEREARLERNKTRSFFS*

Homology

[Close]

BLAST of MELO3C006281 vs. Swiss-Prot
Match: COX23_CANGA (Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=COX23 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.3e-06
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 1


Query: 22  PCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKEREAR 63
           PC      S KCLE+N  ++ +C+E+FD Y+ECKK+  EAR
Sbjct: 63  PCQESAKMSFKCLELNDYDRDQCKEYFDAYRECKKQWLEAR 103

[Close]

BLAST of MELO3C006281 vs. TrEMBL
Match: A0A0A0L4K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.4e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP PPY SAARISDSPCYPQYSASLKCLEV+SSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

[Close]

BLAST of MELO3C006281 vs. TrEMBL
Match: V4U3S5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023064mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.8e-26
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MAS      PPYASAARISDS CYPQY+ASLKCLE  S++KSKCQEHFDVYKECKKKERE
Sbjct: 14 MASGPATDTPPYASAARISDSQCYPQYTASLKCLEEFSTDKSKCQEHFDVYKECKKKERE 73

Query: 61 ARLERNKTRSFFS 74
          ARLERN++RSFFS
Sbjct: 74 ARLERNRSRSFFS 86

[Close]

BLAST of MELO3C006281 vs. TrEMBL
Match: A0A067H3E1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034917mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 9.8e-26
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MAS      PPYASAARISDS CYPQY+ASLKCLE  S++KSKCQEHFDVYKECKKKERE
Sbjct: 1  MASGPATDTPPYASAARISDSQCYPQYTASLKCLEEFSTDKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERN++RSFFS
Sbjct: 61 ARLERNRSRSFFS 73

[Close]

BLAST of MELO3C006281 vs. TrEMBL
Match: A0A061DUZ7_THECC (Cox19 family protein OS=Theobroma cacao GN=TCM_005779 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.7e-25
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 10  PPYASAARISDSPCYPQYSASLKCLEVNSSE-KSKCQEHFDVYKECKKKEREARLERNKT 69
           PPY SAARI+DSPCYPQY+ASLKCLE N SE KSKCQEHFDVYKECKKKEREARLERNK+
Sbjct: 46  PPYPSAARIADSPCYPQYTASLKCLEENGSEDKSKCQEHFDVYKECKKKEREARLERNKS 105

Query: 70  RSFFS 74
           RSFFS
Sbjct: 106 RSFFS 110

[Close]

BLAST of MELO3C006281 vs. TrEMBL
Match: G7KVV2_MEDTR (Cox19-like CHCH family protein OS=Medicago truncatula GN=MTR_7g050540 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.4e-25
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 1


Query: 5  SRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+D  PPY SAARISDS C+PQY+ASLKCLE  +++KSKCQEHFDVYKECKKKEREARLE
Sbjct: 3  SKDSTPPYQSAARISDSQCFPQYTASLKCLEEFNTDKSKCQEHFDVYKECKKKEREARLE 62

Query: 65 RNKTRSFFS 74
          RNKTRS FS
Sbjct: 63 RNKTRSLFS 71

[Close]

BLAST of MELO3C006281 vs. TAIR10
Match: AT1G02160.2 (AT1G02160.2 Cox19 family protein (CHCH motif))

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-18
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1


Query: 4  TSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKE 59
          +++  A  Y SAARISDSPCY QYSASLKCLE   S+KSKCQ+HFDVYKECKKKE
Sbjct: 2  STKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

[Close]

BLAST of MELO3C006281 vs. NCBI nr
Match: gi|449432370|ref|XP_004133972.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-33
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP PPY SAARISDSPCYPQYSASLKCLEV+SSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

[Close]

BLAST of MELO3C006281 vs. NCBI nr
Match: gi|1012232009|ref|XP_015938627.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 [Arachis duranensis])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MAS S+   PPYASAARISDSPC+PQY+ASLKCLE  SS KSKCQEHFDVYKECKKKERE
Sbjct: 1  MASNSKGSTPPYASAARISDSPCFPQYTASLKCLEEFSSNKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNK RSFFS
Sbjct: 61 ARLERNKNRSFFS 73

[Close]

BLAST of MELO3C006281 vs. NCBI nr
Match: gi|568819721|ref|XP_006464394.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Citrus sinensis])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MAS      PPYASAARISDS CYPQY+ASLKCLE  S++KSKCQEHFDVYKECKKKERE
Sbjct: 1  MASGPATDTPPYASAARISDSQCYPQYTASLKCLEEFSTDKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERN++RSFFS
Sbjct: 61 ARLERNRSRSFFS 73

[Close]

BLAST of MELO3C006281 vs. NCBI nr
Match: gi|567905944|ref|XP_006445460.1| (hypothetical protein CICLE_v10023064mg [Citrus clementina])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60
          MAS      PPYASAARISDS CYPQY+ASLKCLE  S++KSKCQEHFDVYKECKKKERE
Sbjct: 14 MASGPATDTPPYASAARISDSQCYPQYTASLKCLEEFSTDKSKCQEHFDVYKECKKKERE 73

Query: 61 ARLERNKTRSFFS 74
          ARLERN++RSFFS
Sbjct: 74 ARLERNRSRSFFS 86

[Close]

BLAST of MELO3C006281 vs. NCBI nr
Match: gi|1009170379|ref|XP_015866168.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-25
Identity = 57/69 (82.61%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 5   SRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKEREARLE 64
           S+   PPY SAARISDSPCYPQYSASLKCLE   S+KSKCQEHFD+YKECKKKEREARLE
Sbjct: 37  SKSSTPPYPSAARISDSPCYPQYSASLKCLEEYQSDKSKCQEHFDIYKECKKKEREARLE 96

Query: 65  RNKTRSFFS 74
           RN  RSFFS
Sbjct: 97  RNSKRSFFS 105

The following BLAST results are available for this feature:

BLAST of MELO3C006281 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COX23_CANGA	7.3e-06	48.78	Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Candida glabrata (s...	[more]

BLAST of MELO3C006281 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4K5_CUCSA	6.4e-33	95.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129550 PE=4 SV=1	[more]
V4U3S5_9ROSI	9.8e-26	80.82	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023064mg PE=4 SV=1	[more]
A0A067H3E1_CITSI	9.8e-26	80.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034917mg PE=4 SV=1	[more]
A0A061DUZ7_THECC	3.7e-25	89.23	Cox19 family protein OS=Theobroma cacao GN=TCM_005779 PE=4 SV=1	[more]
G7KVV2_MEDTR	6.4e-25	81.16	Cox19-like CHCH family protein OS=Medicago truncatula GN=MTR_7g050540 PE=4 SV=1	[more]

BLAST of MELO3C006281 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02160.2	2.3e-18	74.55	Cox19 family protein (CHCH motif)	[more]

BLAST of MELO3C006281 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432370\|ref\|XP_004133972.1\|	9.1e-33	95.89	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sa...	[more]
gi\|1012232009\|ref\|XP_015938627.1\|	1.5e-27	84.93	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 ...	[more]
gi\|568819721\|ref\|XP_006464394.1\|	1.4e-25	80.82	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Citrus sin...	[more]
gi\|567905944\|ref\|XP_006445460.1\|	1.4e-25	80.82	hypothetical protein CICLE_v10023064mg [Citrus clementina]	[more]
gi\|1009170379\|ref\|XP_015866168.1\|	1.8e-25	82.61	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial-like [Zizip...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF
IPR010625	CHCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006301	postreplication repair
biological_process	GO:0022900	electron transport chain
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0016731	oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU49473	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006281T1	MELO3C006281T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU49473	MU49473	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 20..61 score: 4.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 21..59 score: 7.19
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 23..57 score: 9.
None	No IPR available	PANTHER	PTHR21588	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6	coord: 10..73 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006281	Csa3G129550	Cucumber (Chinese Long) v2	cumeB236
MELO3C006281	Cla021390	Watermelon (97103) v1	mewmB461
MELO3C006281	ClCG05G003010	Watermelon (Charleston Gray)	mewcgB427
MELO3C006281	Cla97C05G083640	Watermelon (97103) v2	mewmbB434
MELO3C006281	CSPI03G10460	Wild cucumber (PI 183967)	cpimeB230
MELO3C006281	Cucsa.256760	Cucumber (Gy14) v1	cgymeB439
MELO3C006281	CmaCh14G019200	Cucurbita maxima (Rimu)	cmameB242
MELO3C006281	CmoCh14G019750	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006281	Lsi05G018750	Bottle gourd (USVL1VR-Ls)	lsimeB378
MELO3C006281	Cp4.1LG03g17860	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006281	CsGy3G010570	Cucumber (Gy14) v2	cgybmeB200
MELO3C006281	Carg14903	Silver-seed gourd	carmeB0622
MELO3C006281	CsaV3_3G010620	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006281	Watermelon (97103) v2	mewmbB428
MELO3C006281	Watermelon (97103) v2	mewmbB448
MELO3C006281	Wax gourd	mewgoB513
MELO3C006281	Wax gourd	mewgoB531
MELO3C006281	Cucumber (Gy14) v1	cgymeB533
MELO3C006281	Cucurbita maxima (Rimu)	cmameB343
MELO3C006281	Cucurbita maxima (Rimu)	cmameB763
MELO3C006281	Cucurbita moschata (Rifu)	cmomeB336
MELO3C006281	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006281	Wild cucumber (PI 183967)	cpimeB145
MELO3C006281	Wild cucumber (PI 183967)	cpimeB238
MELO3C006281	Watermelon (Charleston Gray)	mewcgB441
MELO3C006281	Watermelon (97103) v1	mewmB456
MELO3C006281	Cucurbita pepo (Zucchini)	cpemeB141
MELO3C006281	Cucurbita pepo (Zucchini)	cpemeB316
MELO3C006281	Cucurbita pepo (Zucchini)	cpemeB813
MELO3C006281	Bottle gourd (USVL1VR-Ls)	lsimeB029
MELO3C006281	Bottle gourd (USVL1VR-Ls)	lsimeB445
MELO3C006281	Cucumber (Gy14) v2	cgybmeB208
MELO3C006281	Silver-seed gourd	carmeB0236
MELO3C006281	Silver-seed gourd	carmeB0941
MELO3C006281	Silver-seed gourd	carmeB1050
MELO3C006281	Cucumber (Chinese Long) v3	cucmeB244