CsGy3G010570 (gene) Cucumber (Gy14) v2

NameCsGy3G010570
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptioncytochrome c oxidase-assembly factor COX23, mitochondrial-like
LocationChr3 : 8322068 .. 8325183 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAGATTTAATAATGTGTTTCTTAAAAATTTACATTGTTATTGAATATTTTTATCTAGCTTGGTAATTAAAAAATCACTCAAGTATAATGGATGCAATGGGTTTTTTTTGTCTTTTAAAAAAACATTACCTATTACATATTTAACAATCGGTCGGGTTGGACCGGATTGGGCCGGCTCGATACAAATACCTATAAAATGAGATTGGTTCTCTTGCTCTCTAATCGGAATATCAGGCGGTCATCTTAACCGACCTCTCTTTTCCGCCAACACAGAGTGTGTTCTTCCGCCATGGCTTCCACTTCTAGGGATCCAACTCCGCCGTACCCCAGTGCGGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTACTTTCACTCTCATACTCCCTCTCCGTTATTCTCTCTTTTTTTTTTTTTTTTCTATAATTCTCCGCCAGAAATTTAGGTATCTGTGCTCCAGTTGTCTCACAATTTGATTTTGGACTTGTTCTACACTGGTTCATTTGAGATTGATTGCGTGCTGTGCATCAATTGTTTTCAGCTTGTGTTTTTTATGGTTAAACTTGCGAATTAGTGGTTGGCGATGATCGTGCGAATTCTAATTTTTGTGGCGATTCTCTGTGCTCTGTTACTTGAATATTGGCTGGCCTGTTTGATTACTTTTCTAGGGTTTCTATTTCCATCCAGTTAAGATTAATTGATGAGGAGTAAGCGAACTTAAATAAATGTATTAGTGATCGTATGATAATCTTAAAAACATAATAGGATTTACCTGGGTATTACTTGATAAAACGCTCGTCGGAGTTCTTAGAGTGGCTGTGTTTTGAGTCCACTTACTGTTCTAACTAATAACTATGGAAATGGTGAAAAAGGAGCTTTTACTAGGATTTTGGAGCCGAATGATCATAATCCCCCTTTCCTTGGGGCCAAGTGTCATAGTAGGAATTACTAAGTTGGATGGTTCATTCTTCTACTCCAAAACTAATTAGTTTTCAATCCCATCCAATTTCATTATTTGGCTTATTCTTTGAGTTATATTTATAAGAGGGTTTTAACTTTCTGGGTATCCCCCTATGTATTTGTTTGATTTAGGATAACGGATTACATATAACACATAACCCCACATATGGACAGAATAACTTTTAAAAAGATGTTTAATGCGGAAGCCTCGAGCTGCAACTTAAGGCAAGGATAAAGGTCATATACAAATTGTTCATAGGAAGCATGCGTTGGTAATGGATGTTAAGTCATGTGCAGAGTGAACTTGTAATTTGAATTTTTAAATGAGGACTATCGTTAAAGTGCAGCTTATTTTTGGTGTTCCATGACCATCCAATGAGAAGTTACTGCTTAGATTACTAATTTTTGTAGATTTGGAATTTTATTTTTATGTCAGAGAACATTTTGAACTTCTTATCAGAGAAAATCTCTTTTTCCAAATGTTGTAGGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTACTCTTATTTATCACATGAAATTGGAATGATGGAACATTTTGTAACGTGTGGCATTGTTACTGAAAAACATATGCTCACTATTTATGGGAATTTGGCTTCTGAGATGATGGTACTTACTAACCAAGATTGTAATTCCAAATGAGCACATCCCAAAGAGGCATCAAAATGTTAAAATATGATCTTGGTCTTCAGTAAAGTTATATTTTGATCTTTTAAGTTTTAGTAATTTCTATGTCACATATTCTATCCTAGTTAAAATCTGCAACAAAAAAGTGACTACTCATTTTGTGATATCAAATTTATATGCAAGTGATGTGTATTGTCTCTTCCATGTGAAAACCTCTTATTAATTATACGTTGATTGGCAACACAATGAAATACCATATTAATGATAAATTGGATTTGAAGTTATTGAAGCTTGCGGGTCTAAAATAAAAACTTTTTGCAAATTGGGGATTAAAATTACTCTATGACCTGAAAGATACTATGGCATATAAGATGAGAAATATTATTGTGATTCATGATACTTAGAATCCTCTGGCCTATGTTCCATAACATATCCTTGGTTGGTGTAGTATAGTAGCATAACGCACCAATTCTTGATCAGATATTCTTTGTTCATGAAGTTTCTAACTTGAACGAGATGTTGTGTTGTGTCTTCTTTCCAGCGGGAAGCTCGATTGGAACGCAACAAGACACGGTCTTTATTCTCATGAAATTATCTTCAGGCATGTTTCTTGATGTTAAAGTATGTATGTTTTTCATGCAATCTACAAGCCTCCCACCATTTCACATTCTACTCGATGATGATTATTGATTGCATATGCCTTGAAATTGAACTTTATGTTCATTTGGTGAATAATTCTATGAAATATCTACCCACACTTTTAGGGTTTTTTTTAACTTCAGAATGTTTATGATTATGCTGCGTAGGCTATTTTACCTGATGTACTAAAAGAGGGAAATTGTCCAACGAACTCTTTTTGTTCCACTCTTCCTTCATTCGGGTTCAATGTTGATTTTATGAGGAGATGCGACCACGTAGAGCTCAGTTAGGGGTCGGGTTATCAAACGAATGGATATGTAAGAAAATTCACTGGGGAGTAGGTACAAAGAACAAGCTATTTGTAGATCATTTAACTTTCTATCAATGTATTTAGAGTCAAAAAATATATAATCCCCATCTATTTTCAAAATACCAAAATTGAATTTGAAACCTAATCGATCTGCATTTGACTTGATTCAAACCAGCCAAACCGAAACGAAACATATCAATCCCTAATGTGCAGCTAACAACTCCAAATCCACCTCATACAAGTTTAACTTCCTTTAAGAACTTATTTGTTGCTACTTTGATCTTCGACTTCAAAATCAGATTGAATTGTTTCCATGTTGCTAATTTCATATGTTCGTGGAAGGCAATGCCTCTAACAGTTCAAAAATCGAAACCTCAACCGATATAAAGGCTTCCTAAATTTTCAGGAATATTTATAGAGATGCAACAAACAAAAATAACCTAAATTTTCAAAAAAAAAACAAAAAAACAAAAAAACAAAAAAA

mRNA sequence

AAGAGATTTAATAATGTGTTTCTTAAAAATTTACATTGTTATTGAATATTTTTATCTAGCTTGGTAATTAAAAAATCACTCAAGTATAATGGATGCAATGGGTTTTTTTTGTCTTTTAAAAAAACATTACCTATTACATATTTAACAATCGGTCGGGTTGGACCGGATTGGGCCGGCTCGATACAAATACCTATAAAATGAGATTGGTTCTCTTGCTCTCTAATCGGAATATCAGGCGGTCATCTTAACCGACCTCTCTTTTCCGCCAACACAGAGTGTGTTCTTCCGCCATGGCTTCCACTTCTAGGGATCCAACTCCGCCGTACCCCAGTGCGGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGATTGGAACGCAACAAGACACGGTCTTTATTCTCATGAAATTATCTTCAGGCATGTTTCTTGATGTTAAAGTATGTATGTTTTTCATGCAATCTACAAGCCTCCCACCATTTCACATTCTACTCGATGATGATTATTGATTGCATATGCCTTGAAATTGAACTTTATGTTCATTTGGTGAATAATTCTATGAAATATCTACCCACACTTTTAGGGTTTTTTTTAACTTCAGAATGTTTATGATTATGCTGCGTAGGCTATTTTACCTGATGTACTAAAAGAGGGAAATTGTCCAACGAACTCTTTTTGTTCCACTCTTCCTTCATTCGGGTTCAATGTTGATTTTATGAGGAGATGCGACCACGTAGAGCTCAGTTAGGGGTCGGGTTATCAAACGAATGGATATGTAAGAAAATTCACTGGGGAGTAGGTACAAAGAACAAGCTATTTGTAGATCATTTAACTTTCTATCAATGTATTTAGAGTCAAAAAATATATAATCCCCATCTATTTTCAAAATACCAAAATTGAATTTGAAACCTAATCGATCTGCATTTGACTTGATTCAAACCAGCCAAACCGAAACGAAACATATCAATCCCTAATGTGCAGCTAACAACTCCAAATCCACCTCATACAAGTTTAACTTCCTTTAAGAACTTATTTGTTGCTACTTTGATCTTCGACTTCAAAATCAGATTGAATTGTTTCCATGTTGCTAATTTCATATGTTCGTGGAAGGCAATGCCTCTAACAGTTCAAAAATCGAAACCTCAACCGATATAAAGGCTTCCTAAATTTTCAGGAATATTTATAGAGATGCAACAAACAAAAATAACCTAAATTTTCAAAAAAAAAACAAAAAAACAAAAAAACAAAAAAA

Coding sequence (CDS)

ATGGCTTCCACTTCTAGGGATCCAACTCCGCCGTACCCCAGTGCGGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGATTGGAACGCAACAAGACACGGTCTTTATTCTCATGA

Protein sequence

MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLERNKTRSLFS
BLAST of CsGy3G010570 vs. NCBI nr
Match: XP_004133972.1 (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN56698.1 hypothetical protein Csa_3G129550 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-31
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0

Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSLFS 74
          ARLERNKTRS FS
Sbjct: 61 ARLERNKTRSFFS 73

BLAST of CsGy3G010570 vs. NCBI nr
Match: XP_022924627.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata])

HSP 1 Score: 135.2 bits (339), Expect = 9.0e-29
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0

Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP+PPYPSAARISDSPC+PQYSASLKCLE HSSE+SKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLKCLEEHSSERSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSLFS 74
          ARLERNK RS FS
Sbjct: 61 ARLERNKKRSFFS 73

BLAST of CsGy3G010570 vs. NCBI nr
Match: XP_023527834.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0

Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP+PPYPSAARISDSPC+ QYSASLKCLE HSSE+SKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFLQYSASLKCLEEHSSERSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSLFS 74
          ARLERNK RS FS
Sbjct: 61 ARLERNKKRSFFS 73

BLAST of CsGy3G010570 vs. NCBI nr
Match: XP_022980456.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita maxima])

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-27
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0

Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP PPYPSAARISDSPC+ QYSASLKCLE HSSE+SKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPPPPYPSAARISDSPCFLQYSASLKCLEEHSSERSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSLFS 74
          ARLERNK RS FS
Sbjct: 61 ARLERNKKRSFFS 73

BLAST of CsGy3G010570 vs. NCBI nr
Match: XP_022147041.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia])

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-26
Identity = 64/73 (87.67%), Postives = 67/73 (91.78%), Query Frame = 0

Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MAST+RD  PPY SAARISDSPCYPQYSASLKCLE HSSEK+KCQEHFDVYKECKKKERE
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSLFS 74
          ARLERN+ RS FS
Sbjct: 61 ARLERNRKRSFFS 73

BLAST of CsGy3G010570 vs. TAIR10
Match: AT1G02160.2 (Cox19 family protein (CHCH motif))

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-17
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0

Query: 12 YPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKE 59
          YPSAARISDSPCY QYSASLKCLE   S+KSKCQ+HFDVYKECKKKE
Sbjct: 10 YPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

BLAST of CsGy3G010570 vs. TrEMBL
Match: tr|A0A0A0L4K5|A0A0A0L4K5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0

Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSLFS 74
          ARLERNKTRS FS
Sbjct: 61 ARLERNKTRSFFS 73

BLAST of CsGy3G010570 vs. TrEMBL
Match: tr|A0A2P5FPP8|A0A2P5FPP8_9ROSA (CHCH OS=Trema orientalis OX=63057 GN=TorRG33x02_045340 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 0

Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MAS++    PPYPSAARISDSPC+PQY+ASLKCLE  SS+KSKCQEHFDVYKECKKKERE
Sbjct: 1  MASSTPASAPPYPSAARISDSPCFPQYTASLKCLEKFSSDKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSLFS 74
          ARLERNKTRS FS
Sbjct: 61 ARLERNKTRSFFS 73

BLAST of CsGy3G010570 vs. TrEMBL
Match: tr|M5XLD7|M5XLD7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G120100 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-24
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0

Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+  TPPYPSAARISDS CYPQY+ASLKCLE ++S+KSKCQEHFD+YKECKKKEREARLE
Sbjct: 3  SKVSTPPYPSAARISDSQCYPQYTASLKCLEEYNSDKSKCQEHFDIYKECKKKEREARLE 62

Query: 65 RNKTRSLFS 74
          RNKTRSLFS
Sbjct: 63 RNKTRSLFS 71

BLAST of CsGy3G010570 vs. TrEMBL
Match: tr|A0A1U8N7P5|A0A1U8N7P5_GOSHI (cytochrome c oxidase-assembly factor COX23, mitochondrial-like OS=Gossypium hirsutum OX=3635 GN=LOC107945582 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-24
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          SR  TPPYPSAARI+DSPC+PQY+ASLKCLE + S+KSKCQEHFDVYKECKKKEREARLE
Sbjct: 3  SRAATPPYPSAARIADSPCFPQYTASLKCLEEYGSDKSKCQEHFDVYKECKKKEREARLE 62

Query: 65 RNKTRSLFS 74
          RNK RSLFS
Sbjct: 63 RNKNRSLFS 71

BLAST of CsGy3G010570 vs. TrEMBL
Match: tr|A0A0D2SYR1|A0A0D2SYR1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G110500 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-24
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0

Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          SR  TPPYPSAARI+DSPC+PQY+ASLKCLE + S+KSKCQEHFDVYKECKKKEREARLE
Sbjct: 3  SRAATPPYPSAARIADSPCFPQYTASLKCLEEYGSDKSKCQEHFDVYKECKKKEREARLE 62

Query: 65 RNKTRSLFS 74
          RNK RSLFS
Sbjct: 63 RNKNRSLFS 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004133972.11.9e-3198.63PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sa... [more]
XP_022924627.19.0e-2991.78cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata][more]
XP_023527834.11.3e-2790.41cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita pepo subsp.... [more]
XP_022980456.12.2e-2790.41cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita maxima][more]
XP_022147041.11.4e-2687.67cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G02160.21.9e-1787.23Cox19 family protein (CHCH motif)[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L4K5|A0A0A0L4K5_CUCSA1.3e-3198.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1[more]
tr|A0A2P5FPP8|A0A2P5FPP8_9ROSA1.2e-2483.56CHCH OS=Trema orientalis OX=63057 GN=TorRG33x02_045340 PE=4 SV=1[more]
tr|M5XLD7|M5XLD7_PRUPE2.6e-2485.51Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G120100 PE=4 SV=1[more]
tr|A0A1U8N7P5|A0A1U8N7P5_GOSHI2.6e-2485.51cytochrome c oxidase-assembly factor COX23, mitochondrial-like OS=Gossypium hirs... [more]
tr|A0A0D2SYR1|A0A0D2SYR1_GOSRA2.6e-2485.51Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G110500 PE=4 ... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009069Cys_alpha_HP_mot_SF
IPR010625CHCH
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G010570.1CsGy3G010570.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.287.1130coord: 13..71
e-value: 3.9E-11
score: 44.5
NoneNo IPR availablePROSITEPS51808CHCHcoord: 20..62
score: 14.735
IPR010625CHCHPFAMPF06747CHCHcoord: 23..57
e-value: 1.8E-8
score: 34.2
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILYSSF47072Cysteine alpha-hairpin motifcoord: 21..60

The following gene(s) are paralogous to this gene:

None