CSPI03G10460 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G10460
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Cox19 family protein (CHCH motif)
Location	Chr3 : 8355963 .. 8358464 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGATTGATTCTCTTGCTCTCTAATCGGAATATCAAGCGGTCATCTTAACCGACCTCTCTTTTCCGCCAACACAGAGTGTGTTCTTCCGCCATGGCTTCCACTTCCAGGGATCCAACTCCGCCGTACCCCAGTGCGGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTACTTTCACTCTCATACTCCCTCTCCGTTATTCTCTTTTTTTTTTTTTTGCTTTTCTATAATTCTCCGCCAGAAATTTAGGTATCTGTGCTCCAGTTGTCTCACAATTTGATTTTGGACTTGTTCTACACTGGTTCATTTGAGATTGATTGCGTGCTGTGCATCAATTGTTTTCAGCTTGTGTTTTTTATGGTTAAACTTGCGAATTAGTGGTTGGCGATGATCGTGCGAATTCTAATTTTTGTGGCGATTCTCTGTGCTCTGTTACTTGAATATTGGCTGGCCTGTTTGATTACTTTTCTAGGGTTTCTATTTCCATCCAGTTTAGATTAATTGATGAGGAGTAAGCGAATAGTGATCGTATGATAATCTTAAAAACATAATAGGATCTACCTGGGTATTACTTGATAAAACGCTCGTCGGAGTTCTTAGAGTGGCTGTGTTTTGAGTCCACTTACTGTTCTAACTAATAACTATGGAAATGGTGAAAAAGGAGCTTTTACTAGGATTTTGGAGCCGAATGATCATAATTCCCCTTTCCTTGGGGCCAAGTGTCATAGTAGGAATTACTAAGTTGGATGGTTCATTCTTCTACTCCAAAACTAATTAGTTTTCAATCCCATCCAATTTCATTATTTGGCTTATTCTTTGAGTTATATTTATAAGAGGGTTTTAACTTTCTGGGTATCCCCCTATGTATTTGTTTGATTTAGGATAACGGATTACATATAACACATAACCCCACATATGGACAGAATAACTTTTAAAAAGATGTTTAATGCGGAAGCCTCGAGCTGCAACTTAAGGCAAGGATAAAGGTCATATACAAATTGTTCATAGGAAGCATGCGTTGGTAATGGATGTTAAGTCATGTGCAGAGTGAACTTGTAATTTGAATTTTTAAATGAGGGCTATCGTTAAAGTGCAGCTTATTTTTGGTGTTCCATGACCATCCAATGAGAAGTTAGTGCTTAGATTACTTATTTTTGTAGATTTGGAATTTTATTTTTATGTCAGAGAACATTTTGAACTTCTTATCAGAGAAAATCTCTTTTTCCAAATGTTGTAGGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTACTCTTATTTATCACATGAAATTGGAATGATGGAACATTTTGTAACGTGTGGCATTGTTACTGAAAAACATATGCTCACTATTTATGGGAATTTGGCTTCTGAGATGATGGTACTTACTAACCAAGATTGTAATTCCAAATGAGCACATCCCAAAGAGGCATCAAAATGTTAAAATATGATCTTGGTCTTCAGTAAAGTTATATTTTGATCTTTTAAGTTTTAGTAATTTCTATGTCACATATTCTATCCTAGTTAAAATCTGCAACAAAAAAGTGACTACTCATTTTGTGATATCAAATTTATATGCAAGTGATGTGTATTGTCTCTTCCATGTGAAAACCTCTTATTAATTATACGTTGATTGGCAACACAATGAAATACCATATTAATGATAAATTGGATTTGAAGTTATTGAAGCTTGCGGGTCTAAAATAAAAACTTTTTGCAAATTGGGGATTAAAATTACTCTATGACCTGAAAGATACTATGGCATATAAGATGAGAAATATTATTGTGATTCATGATACTTAGAATCCTCTGGCCTATGTTCCATAACATATCCTTGGTTGGTGTAGTATAGTAGCATAACGCACCAATTCTTGATCAGATATTCTTTGTTCATGAAGTTTCTAACTTGAACGAGATGTTGTGTTGTGTCTTCTTTCCAGCGGGAAGCTCGATTGGAACGCAACAAGACACGGTCTTTCTTCTCATGAAATTATCTTCAGGCATGTTTCTTGATGTTAAAGTATGTATGTTTTTCATGCAATCTACAAGCCTCCCACCACTTCACATTCTACTCGATGATGATTATTGATCGCATATGCCTTTAGGGTTTTATGTTCATTTGGTGAATAATTCTATGAAATATCTACCCACACTTTTAGGGTTTTTTTTTAACTTCAGAATGTTTAGGATTATGCTGCGTAGGCTATTTTATCTGATGTACTAAAAGAGGGAAATTGTCCAACGAACTCTTTTTGTTCCACTCTTCCTTCATTCGGGTTCAATGTTGATTTTATGAGGAGATGCGACCACGTAGAGCTCAGTTAGGGGTCGGGTTATCAAACGAATGGATATGTAAGAAAATTCACTGGGGAGTAGGTTCAAAGAACAAGCTATTTGTAGATCATTTAACTTTCTATCAATATATTTACA

mRNA sequence

ATGGCTTCCACTTCCAGGGATCCAACTCCGCCGTACCCCAGTGCGGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGATTGGAACGCAACAAGACACGGTCTTTCTTCTCATGA

Coding sequence (CDS)

ATGGCTTCCACTTCCAGGGATCCAACTCCGCCGTACCCCAGTGCGGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGATTGGAACGCAACAAGACACGGTCTTTCTTCTCATGA

Homology

[Close]

BLAST of CSPI03G10460 vs. TrEMBL
Match: A0A0A0L4K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.4e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

[Close]

BLAST of CSPI03G10460 vs. TrEMBL
Match: M5XLD7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014382mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-24
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+  TPPYPSAARISDS CYPQY+ASLKCLE ++S+KSKCQEHFD+YKECKKKEREARLE
Sbjct: 3  SKVSTPPYPSAARISDSQCYPQYTASLKCLEEYNSDKSKCQEHFDIYKECKKKEREARLE 62

Query: 65 RNKTRSFFS 74
          RNKTRS FS
Sbjct: 63 RNKTRSLFS 71

[Close]

BLAST of CSPI03G10460 vs. TrEMBL
Match: A0A0D2SYR1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G110500 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-24
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          SR  TPPYPSAARI+DSPC+PQY+ASLKCLE + S+KSKCQEHFDVYKECKKKEREARLE
Sbjct: 3  SRAATPPYPSAARIADSPCFPQYTASLKCLEEYGSDKSKCQEHFDVYKECKKKEREARLE 62

Query: 65 RNKTRSFFS 74
          RNK RS FS
Sbjct: 63 RNKNRSLFS 71

[Close]

BLAST of CSPI03G10460 vs. TrEMBL
Match: B9SKF2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0658520 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-24
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+  TPPYPSAARISDS CYPQY+ASLKCLE  SS+KSKCQ+HFDVYKECKKKEREARLE
Sbjct: 3  SKAATPPYPSAARISDSQCYPQYTASLKCLEEFSSDKSKCQKHFDVYKECKKKEREARLE 62

Query: 65 RNKTRSFFS 74
          RN++RSFFS
Sbjct: 63 RNRSRSFFS 71

[Close]

BLAST of CSPI03G10460 vs. TrEMBL
Match: V7B4C4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G138900g PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-24
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+  TPPYPSAARISDS C+PQY+ASLKCLE  +S+KSKCQEHFDVYKECKKKEREARLE
Sbjct: 3  SKGSTPPYPSAARISDSQCFPQYTASLKCLEEFNSDKSKCQEHFDVYKECKKKEREARLE 62

Query: 65 RNKTRSFFS 74
          RNK RSFFS
Sbjct: 63 RNKNRSFFS 71

[Close]

BLAST of CSPI03G10460 vs. TAIR10
Match: AT1G02160.2 (AT1G02160.2 Cox19 family protein (CHCH motif))

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-17
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 12 YPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKE 59
          YPSAARISDSPCY QYSASLKCLE   S+KSKCQ+HFDVYKECKKKE
Sbjct: 10 YPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

[Close]

BLAST of CSPI03G10460 vs. NCBI nr
Match: gi|449432370|ref|XP_004133972.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

[Close]

BLAST of CSPI03G10460 vs. NCBI nr
Match: gi|1012232009|ref|XP_015938627.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 [Arachis duranensis])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-25
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MAS S+  TPPY SAARISDSPC+PQY+ASLKCLE  SS KSKCQEHFDVYKECKKKERE
Sbjct: 1  MASNSKGSTPPYASAARISDSPCFPQYTASLKCLEEFSSNKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNK RSFFS
Sbjct: 61 ARLERNKNRSFFS 73

[Close]

BLAST of CSPI03G10460 vs. NCBI nr
Match: gi|1009170379|ref|XP_015866168.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-25
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 5   SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
           S+  TPPYPSAARISDSPCYPQYSASLKCLE + S+KSKCQEHFD+YKECKKKEREARLE
Sbjct: 37  SKSSTPPYPSAARISDSPCYPQYSASLKCLEEYQSDKSKCQEHFDIYKECKKKEREARLE 96

Query: 65  RNKTRSFFS 74
           RN  RSFFS
Sbjct: 97  RNSKRSFFS 105

[Close]

BLAST of CSPI03G10460 vs. NCBI nr
Match: gi|1009169531|ref|XP_015865715.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-25
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+  TPPYPSAARISDSPCYPQYSASLKCLE + S+KSKCQEHFD+YKECKKKEREARLE
Sbjct: 3  SKSSTPPYPSAARISDSPCYPQYSASLKCLEEYQSDKSKCQEHFDIYKECKKKEREARLE 62

Query: 65 RNKTRSFFS 74
          RN  RSFFS
Sbjct: 63 RNSKRSFFS 71

[Close]

BLAST of CSPI03G10460 vs. NCBI nr
Match: gi|645253053|ref|XP_008232404.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Prunus mume])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+  TPPYPSAARISDS CYPQY+ASLKCLE ++S+KSKCQEHFD+YKECKKKEREARLE
Sbjct: 3  SKASTPPYPSAARISDSQCYPQYTASLKCLEEYNSDKSKCQEHFDIYKECKKKEREARLE 62

Query: 65 RNKTRSFFS 74
          RNKTRS FS
Sbjct: 63 RNKTRSLFS 71

The following BLAST results are available for this feature:

BLAST of CSPI03G10460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G10460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4K5_CUCSA	6.4e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129550 PE=4 SV=1	[more]
M5XLD7_PRUPE	2.4e-24	84.06	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014382mg PE=4 SV=1	[more]
A0A0D2SYR1_GOSRA	2.4e-24	84.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G110500 PE=4 SV=1	[more]
B9SKF2_RICCO	5.4e-24	84.06	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0658520 PE=4 SV=1	[more]
V7B4C4_PHAVU	5.4e-24	84.06	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G138900g PE=4 SV=1	[more]

BLAST of CSPI03G10460 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02160.2	1.5e-17	87.23	Cox19 family protein (CHCH motif)	[more]

BLAST of CSPI03G10460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432370\|ref\|XP_004133972.1\|	9.1e-33	100.00	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sa...	[more]
gi\|1012232009\|ref\|XP_015938627.1\|	1.8e-25	84.93	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 ...	[more]
gi\|1009170379\|ref\|XP_015866168.1\|	4.1e-25	85.51	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial-like [Zizip...	[more]
gi\|1009169531\|ref\|XP_015865715.1\|	4.1e-25	85.51	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial-like [Zizip...	[more]
gi\|645253053\|ref\|XP_008232404.1\|	2.7e-24	84.06	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Prunus mum...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF
IPR010625	CHCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006301	postreplication repair
biological_process	GO:0022900	electron transport chain
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0016731	oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G10460.1	CSPI03G10460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 20..61 score: 2.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 21..59 score: 1.57
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 23..57 score: 1.
None	No IPR available	PANTHER	PTHR21588	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6	coord: 10..73 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G10460	Cla021390	Watermelon (97103) v1	cpiwmB231
CSPI03G10460	Csa3G129550	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G10460	MELO3C006281	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G10460	ClCG05G003010	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G10460	Lsi05G018750	Bottle gourd (USVL1VR-Ls)	cpilsiB207
CSPI03G10460	CsaV3_3G010620	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G10460	Cla97C05G083640	Watermelon (97103) v2	cpiwmbB209
CSPI03G10460	Cucsa.256760	Cucumber (Gy14) v1	cgycpiB383
CSPI03G10460	CmaCh14G019200	Cucurbita maxima (Rimu)	cmacpiB255
CSPI03G10460	CmoCh14G019750	Cucurbita moschata (Rifu)	cmocpiB243
CSPI03G10460	Cp4.1LG03g17860	Cucurbita pepo (Zucchini)	cpecpiB611
CSPI03G10460	CsGy3G010570	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G10460	Carg14903	Silver-seed gourd	carcpiB0651

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G10460	Watermelon (Charleston Gray)	cpiwcgB255
CSPI03G10460	Cucurbita pepo (Zucchini)	cpecpiB136
CSPI03G10460	Cucurbita pepo (Zucchini)	cpecpiB861
CSPI03G10460	Bottle gourd (USVL1VR-Ls)	cpilsiB149
CSPI03G10460	Bottle gourd (USVL1VR-Ls)	cpilsiB231
CSPI03G10460	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G10460	Cucumber (Gy14) v2	cgybcpiB116
CSPI03G10460	Silver-seed gourd	carcpiB0261
CSPI03G10460	Silver-seed gourd	carcpiB0998
CSPI03G10460	Silver-seed gourd	carcpiB1115
CSPI03G10460	Cucumber (Chinese Long) v3	cpicucB151
CSPI03G10460	Watermelon (97103) v2	cpiwmbB188
CSPI03G10460	Watermelon (97103) v2	cpiwmbB239
CSPI03G10460	Wax gourd	cpiwgoB270
CSPI03G10460	Wild cucumber (PI 183967)	cpicpiB063
CSPI03G10460	Wild cucumber (PI 183967)	cpicpiB103
CSPI03G10460	Cucumber (Gy14) v1	cgycpiB486
CSPI03G10460	Cucurbita maxima (Rimu)	cmacpiB361
CSPI03G10460	Cucurbita maxima (Rimu)	cmacpiB826
CSPI03G10460	Cucurbita moschata (Rifu)	cmocpiB353
CSPI03G10460	Cucurbita moschata (Rifu)	cmocpiB814