Cucsa.256760 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.256760
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Cox19 family protein (CHCH motif)
Location	scaffold02229 : 4285108 .. 4287598 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTCATCTTAACCGACCTCTCTTTTCCGCCAACACAGAGTGTGTTCTTCCGCCATGGCTTCCACTTCTAGGGATCCAACTCCGCCGTACCCCAGTGCGGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTACTTTCACTCTCATACTCCCTCTCCGTTATTCTCTtCTTTTTTTTTTTTtttCtATAATtCTCCGCCAGAAATTTAGGTATCTGTGCTCCAGTTGTCTCACAATTTGATTTTGGACTTGTTCTACACTGGTTCATTTGAGATTGATTGCGTGCTGTGCATCAATTGTTTTCAGCTTGTGTTTTTTATGGTTAAACTTGCGAATTAGTGGTTGGCGATGATCGTGCGAATTCTAATTTTTGTGGCGATTCTCTGTGCTCTGTTACTTGAATATTGGCTGGCCTGTTTGATTACTTTTCTAGGGTTTCTATTTCCATCCAGTTAAGATTAATTGATGAGGAGTAAGCGAACTTAAATAAATGTATTAGTGATCGTATGATAATCTTAAAAACATAATAGGATTTACCTGGGTATTACTTGATAAAACGCTCGTCGGAGTTCTTAGAGTGGCTGTGTTTTGAGTCCACTTACTGTTCTAACTAATAACTATGGAAATGGTGAAAAAGGAGCTTTTACTAGGATTTTGGAGCCGAATGATCATAATCCCCCTTTCCTTGGGGCCAAGTGTCATAGTAGGAATTACTAAGTTGGATGGTTCATTCTTCTACTCCAAAACTAATTAGTTTTCAATCCCATCCAATTTCATTATTTGGCTTATTCTTTGAGTTATATTTATAAGAGGGTTTTAACTTTCTGGGTATCCCCcTATGTATTTGTTTGATTTAGGATAACGGATTACATATAACACATAACCCCACATATGGACAGAATAACTTTTAAAAAGATGTTTAATGCGGAAGCCTCGAGCTGCAACTTAAGGCAAGGATAAAGGTCATATACAAATTGTTCATAGGAAGCATGCGTTGGTAATGGATGTTAAGTCATGTGCAGAGTGAACTTGTAATTTGAATTTTTAAATGAGGACTATCGTTAAAGTGCAGCTTATTTTTGGTGTTCCATGACCATCCAATGAGAAGTTACTGCTTAGATTACTAATTTTTGTAGATTTGGAATTTTATTTTtATGTCAGAGAACATTTTGAACTTCTTATCAGAGAAAATCTCTTTTTCCAAATGTTGTAGGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTACTCTTATTTATCACATGAAATTGGAATGATGGAACATTTTGTAACGTGTGGCATTGTTACTGAAAAACATATGCTCACTATTTATGGGAATTTGGCTTCTGAGATGATGGTACTTACTAACCAAGATTGTAATTCCAAATGAGCACATCCCAAAGAGGCATCAAAATGTTAAAATATGATCTTGGTCTTCAGTAAAGTTATATTTTGATCTTTTAAGTTTTAGTAATTTCTATGTCACATATTCTATCCTAGTTAAAATCTGCAACAAAAAAGTGACTACTCATTTTGTGATATCAAATTTATATGCAAGTGATGTGTATTGTCTCTTCCATGTGAAAACCTCTTATTAATTATACGTTGATTGGCAACACAATGAAATACCATATTAATGATAAATTGGATTTGAAGTTATTGAAGCTTGCGGGTCTAAAATAAAAACTTTTTGCAAATTGGGGATTAAAATTACTCTATGACCTGAAAGATACTATGGCATATAAGATGAGAAATATTATTGTGATTCATGATACTTAGAATCCTCTGGCCTATGTTCCATAACATATCCTTGGTTGGTGTAGTATAGTAGCATAACGCACCAATTCTTGATCAGATATTCTTTGTTCATGAAGTTTCTAACTTGAACGAGATGTTGTGTTGTGTCTTCTTTCCAGCGGGAAGCTCGATTGGAACGCAACAAGACACGGTCTTTATTCTCATGAAATTATCTTCAGGCATGTTTCTTGATGTTAAAGTATGTATGTTTTTCATGCAATCTACAAGCCTCCCACCATTTCACATTCTACTCGATGATGATTATTGATTGCATATGCCTTGAAATTGAACTTTATGTTCATTTGGTGAATAATTCTATGAAATATCTACCCACACTTTTAGGGTTTTTTTtAACTTCAGAATGTTTATGATTATGCTGCGTAGGCTATTTTACCTGATGTACTAAAAGAGGGAAATTGTCCAACGAACTCTTTTTGTTCCACTCTTCCTTCATTCGGGTTCAATGTTGATTTTATGAGGAGATGCGACCACGTAGAGCTCAGTTAGGGGTCGGGTTATCAAACGAATGGATATGTAAGAAAATTCACTGGGGAGTAGGTACAAAGAACAAGCTATTTGTAGATCATTTAACTTTCTATCAATGTATTTAGAGTCAAAAAATA

mRNA sequence

GGTCATCTTAACCGACCTCTCTTTTCCGCCAACACAGAGTGTGTTCTTCCGCCATGGCTTCCACTTCTAGGGATCCAACTCCGCCGTACCCCAGTGCGGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGATTGGAACGCAACAAGACACGGTCTTTATTCTCATGAAATTATCTTCAGGCATGTTTCTTGATGTTAAAGTATGTATGTTTTTCATGCAATCTACAAGCCTCCCACCATTTCACATTCTACTCGATGATGATTATTGATTGCATATGCCTTGAAATTGAACTTTATGTTCATTTGGTGAATAATTCTATGAAATATCTACCCACACTTTTAGGGTTTTTTTTAACTTCAGAATGTTTATGATTATGCTGCGTAGGCTATTTTACCTGATGTACTAAAAGAGGGAAATTGTCCAACGAACTCTTTTTGTTCCACTCTTCCTTCATTCGGGTTCAATGTTGATTTTATGAGGAGATGCGACCACGTAGAGCTCAGTTAGGGGTCGGGTTATCAAACGAATGGATATGTAAGAAAATTCACTGGGGAGTAGGTACAAAGAACAAGCTATTTGTAGATCATTTAACTTTCTATCAATGTATTTAGAGTCAAAAAATA

Coding sequence (CDS)

ATGGCTTCCACTTCTAGGGATCCAACTCCGCCGTACCCCAGTGCGGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGATTGGAACGCAACAAGACACGGTCTTTATTCTCATGA

Protein sequence

MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLERNKTRSLFS*

Homology

[Close]

BLAST of Cucsa.256760 vs. TrEMBL
Match: A0A0A0L4K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSLFS 74
          ARLERNKTRS FS
Sbjct: 61 ARLERNKTRSFFS 73

[Close]

BLAST of Cucsa.256760 vs. TrEMBL
Match: M5XLD7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014382mg PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.0e-27
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+  TPPYPSAARISDS CYPQY+ASLKCLE ++S+KSKCQEHFD+YKECKKKEREARLE
Sbjct: 3  SKVSTPPYPSAARISDSQCYPQYTASLKCLEEYNSDKSKCQEHFDIYKECKKKEREARLE 62

Query: 65 RNKTRSLFS 74
          RNKTRSLFS
Sbjct: 63 RNKTRSLFS 71

[Close]

BLAST of Cucsa.256760 vs. TrEMBL
Match: A0A0D2SYR1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G110500 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.0e-27
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          SR  TPPYPSAARI+DSPC+PQY+ASLKCLE + S+KSKCQEHFDVYKECKKKEREARLE
Sbjct: 3  SRAATPPYPSAARIADSPCFPQYTASLKCLEEYGSDKSKCQEHFDVYKECKKKEREARLE 62

Query: 65 RNKTRSLFS 74
          RNK RSLFS
Sbjct: 63 RNKNRSLFS 71

[Close]

BLAST of Cucsa.256760 vs. TrEMBL
Match: G7KVV2_MEDTR (Cox19-like CHCH family protein OS=Medicago truncatula GN=MTR_7g050540 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-26
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+D TPPY SAARISDS C+PQY+ASLKCLE  +++KSKCQEHFDVYKECKKKEREARLE
Sbjct: 3  SKDSTPPYQSAARISDSQCFPQYTASLKCLEEFNTDKSKCQEHFDVYKECKKKEREARLE 62

Query: 65 RNKTRSLFS 74
          RNKTRSLFS
Sbjct: 63 RNKTRSLFS 71

[Close]

BLAST of Cucsa.256760 vs. TrEMBL
Match: A0A067KAP5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14660 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.5e-26
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 6  RDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLER 65
          +D TPPYPSAARISDS CYPQY+ASLKCLE  SS+KSKCQE FDVYKECKKKEREARLER
Sbjct: 4  KDVTPPYPSAARISDSQCYPQYTASLKCLEEFSSDKSKCQEQFDVYKECKKKEREARLER 63

Query: 66 NKTRSLFS 74
          N+ RSLFS
Sbjct: 64 NRNRSLFS 71

[Close]

BLAST of Cucsa.256760 vs. TAIR10
Match: AT1G02160.2 (AT1G02160.2 Cox19 family protein (CHCH motif))

HSP 1 Score: 90.5 bits (223), Expect = 4.7e-19
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 12 YPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKE 59
          YPSAARISDSPCY QYSASLKCLE   S+KSKCQ+HFDVYKECKKKE
Sbjct: 10 YPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

[Close]

BLAST of Cucsa.256760 vs. NCBI nr
Match: gi|449432370|ref|XP_004133972.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSLFS 74
          ARLERNKTRS FS
Sbjct: 61 ARLERNKTRSFFS 73

[Close]

BLAST of Cucsa.256760 vs. NCBI nr
Match: gi|1012232009|ref|XP_015938627.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 [Arachis duranensis])

HSP 1 Score: 128.6 bits (322), Expect = 4.4e-27
Identity = 61/73 (83.56%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MAS S+  TPPY SAARISDSPC+PQY+ASLKCLE  SS KSKCQEHFDVYKECKKKERE
Sbjct: 1  MASNSKGSTPPYASAARISDSPCFPQYTASLKCLEEFSSNKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSLFS 74
          ARLERNK RS FS
Sbjct: 61 ARLERNKNRSFFS 73

[Close]

BLAST of Cucsa.256760 vs. NCBI nr
Match: gi|645253053|ref|XP_008232404.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Prunus mume])

HSP 1 Score: 128.6 bits (322), Expect = 4.4e-27
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+  TPPYPSAARISDS CYPQY+ASLKCLE ++S+KSKCQEHFD+YKECKKKEREARLE
Sbjct: 3  SKASTPPYPSAARISDSQCYPQYTASLKCLEEYNSDKSKCQEHFDIYKECKKKEREARLE 62

Query: 65 RNKTRSLFS 74
          RNKTRSLFS
Sbjct: 63 RNKTRSLFS 71

[Close]

BLAST of Cucsa.256760 vs. NCBI nr
Match: gi|596012354|ref|XP_007218661.1| (hypothetical protein PRUPE_ppa014382mg [Prunus persica])

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-27
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          S+  TPPYPSAARISDS CYPQY+ASLKCLE ++S+KSKCQEHFD+YKECKKKEREARLE
Sbjct: 3  SKVSTPPYPSAARISDSQCYPQYTASLKCLEEYNSDKSKCQEHFDIYKECKKKEREARLE 62

Query: 65 RNKTRSLFS 74
          RNKTRSLFS
Sbjct: 63 RNKTRSLFS 71

[Close]

BLAST of Cucsa.256760 vs. NCBI nr
Match: gi|823208184|ref|XP_012437557.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Gossypium raimondii])

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-27
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 5  SRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLE 64
          SR  TPPYPSAARI+DSPC+PQY+ASLKCLE + S+KSKCQEHFDVYKECKKKEREARLE
Sbjct: 3  SRAATPPYPSAARIADSPCFPQYTASLKCLEEYGSDKSKCQEHFDVYKECKKKEREARLE 62

Query: 65 RNKTRSLFS 74
          RNK RSLFS
Sbjct: 63 RNKNRSLFS 71

The following BLAST results are available for this feature:

BLAST of Cucsa.256760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4K5_CUCSA	1.5e-34	98.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129550 PE=4 SV=1	[more]
M5XLD7_PRUPE	4.0e-27	85.51	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014382mg PE=4 SV=1	[more]
A0A0D2SYR1_GOSRA	4.0e-27	85.51	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G110500 PE=4 SV=1	[more]
G7KVV2_MEDTR	3.4e-26	84.06	Cox19-like CHCH family protein OS=Medicago truncatula GN=MTR_7g050540 PE=4 SV=1	[more]
A0A067KAP5_JATCU	7.5e-26	85.29	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14660 PE=4 SV=1	[more]

BLAST of Cucsa.256760 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02160.2	4.7e-19	87.23	Cox19 family protein (CHCH motif)	[more]

BLAST of Cucsa.256760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432370\|ref\|XP_004133972.1\|	2.2e-34	98.63	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sa...	[more]
gi\|1012232009\|ref\|XP_015938627.1\|	4.4e-27	83.56	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 ...	[more]
gi\|645253053\|ref\|XP_008232404.1\|	4.4e-27	85.51	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Prunus mum...	[more]
gi\|596012354\|ref\|XP_007218661.1\|	5.7e-27	85.51	hypothetical protein PRUPE_ppa014382mg [Prunus persica]	[more]
gi\|823208184\|ref\|XP_012437557.1\|	5.7e-27	85.51	PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Gossypium ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF
IPR010625	CHCH
IPR009069	Cys_alpha_HP_mot_SF
IPR010625	CHCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006301	postreplication repair
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.256760.1	Cucsa.256760.1	mRNA
Cucsa.256760.2	Cucsa.256760.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 20..61 score: 1.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 21..60 score: 1.2
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 23..57 score: 1.
None	No IPR available	PANTHER	PTHR21588	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6	coord: 10..73 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.256760	Cla021390	Watermelon (97103) v1	cgywmB479
Cucsa.256760	Csa3G129550	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.256760	MELO3C006281	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.256760	ClCG05G003010	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.256760	CSPI03G10460	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.256760	CmoCh14G019750	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.256760	Lsi05G018750	Bottle gourd (USVL1VR-Ls)	cgylsiB415
Cucsa.256760	CsaV3_3G010620	Cucumber (Chinese Long) v3	cgycucB387
Cucsa.256760	Cla97C05G083640	Watermelon (97103) v2	cgywmbB452
Cucsa.256760	Carg14903	Silver-seed gourd	carcgyB0693

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.256760	Silver-seed gourd	carcgyB0269
Cucsa.256760	Silver-seed gourd	carcgyB1190
Cucsa.256760	Watermelon (97103) v2	cgywmbB453
Cucsa.256760	Wax gourd	cgywgoB523
Cucsa.256760	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.256760	Cucurbita maxima (Rimu)	cgycmaB0715
Cucsa.256760	Cucurbita maxima (Rimu)	cgycmaB0727
Cucsa.256760	Cucurbita moschata (Rifu)	cgycmoB0708
Cucsa.256760	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.256760	Watermelon (Charleston Gray)	cgywcgB452
Cucsa.256760	Cucurbita pepo (Zucchini)	cgycpeB0670
Cucsa.256760	Cucurbita pepo (Zucchini)	cgycpeB0675
Cucsa.256760	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.256760	Cucurbita pepo (Zucchini)	cgycpeB0687
Cucsa.256760	Bottle gourd (USVL1VR-Ls)	cgylsiB412
Cucsa.256760	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.256760	Silver-seed gourd	carcgyB1077