Cla97C05G083640 (gene) Watermelon (97103) v2

Overview
NameCla97C05G083640
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptioncytochrome c oxidase-assembly factor COX23, mitochondrial-like
LocationCla97Chr05 : 2767342 .. 2770280 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCGCTTCTAGGGATCCGGCTCCGCCGTATGCCACTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTAGGTTCACTCTCATACTCCCCAACCGTTATTCTCAATTTTTTTCGTTTTTCTTTGATTCTCCGCCAAATATTTACGTATCTGGGCTACTAACCATTTGGATTTCTTCAACACTGGTTCACTTGAGAATGATTGCGTGCTGTGCATCAATTTTTTCGGTTTGTGTTCTGGATGGCTAAACTCTAATTTTCGTGGCGATTCTCTATGCTCTGTTAGTTGAATAATTGGTTAGCCTGTTTAATTTCCCTTTTGTAGTGATACCATACAATCTCCATCCACTTTAGGTCAATTGATGAAGAGTGAGCAAACTTAATTGTGATATTGATCGGATGATAATCTTAAAACCAAAATAGGGTTTACCAGGGTATTACTTGATAGAACGCTCGTGATAGTCCTTAGAGTGGCTGTGTTTTGAGTTCACTTACTGTTCTAACTAACTATTGCAGTAGTGGATGAACTTTTACTCGGATTTTGAAGCCGAGATATGTTAATCCTCATTGCCTTAGGGTCAAGTTCTTATTTAAAATGCCAAAGTAGGAATTACTTAGTTGGATGGTTCTTTTGCTCCAGAACTTAATTAGTTGTCATTCAACATCAGCAATCCCATCCAATTTCATTATTTGGCTAATTCTTAGAGCTGTATTTATAAGAGAGTTTTAACTTTCTGGAGGTCCCTCTATATGTTTGTTTTGATTTAGGTTTACGGATAACACCACATATAGACAGAATAATTTTTAAAAAGACGTTTAGATGTTTAATGCGGAAGTCTCAAGCTGCAACATAAGGCAAGATCGTTTATGGAAAGCATGCATAACTGGTAATGGCTGATAAGTCAGGTGTAAAGTGAAAATTTAATTTGAATTTTTAAATGAGTACTACCTGATAAAGTGCAGCTTAACCTTTGGTGTGTCATAAATCATCCAATGAGAAGTTTGGTGTTTAAAATACTAATTTTGTAGATTTTGAATTTTAATTTTTTGTCAGAGAAAATTTTGAACTTATTAGAGAAAATCTCCTTCCCAAATGTTATAGGTCTTGAAGAACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTTTTCTAACTTGTTCTGTTTTTTGCCTCTTTGGGGTCTGCTCATTTGCTTGTGACGTTAATGGATCAAGGAAATTTAAATAATATCCTCATTTCATTTGGACATAATTGGATAACCAGTGTCTCATTGAGTTAGTTATATGCTCAATCTTAAAGGAATGTTAAAATATGATTTTGGTCCTCACAAAAAGTTCTATTTTGATCTTTCTGTGTTAGTAATTTCTATCTTATATATTCTATCCTAGTTAAAATCTGTAACGAAGAAGTGACTGGACTAATTTTTTTATATCAGATTTATATGCAAGTGATGTATTACATGTCTATGTTGTCTCTTCCATGTGATAACCTCTTAGTTATATGTTGATCGGCAACAAAATAGAATACCTTTTTTTTCTTTTTTCTTTTTTGTGTGTGTGTATGTATAAGTCTTTGATTCAGATTTTAATGGTAGATTGAATTTGAAATTATTGAAGCTTGAGGGTCTAAAATAAAAACTTTTTGGAACTTGGGATTTAATTTCAGGAATCCAAAATTACTCTATGACCTGAAGGATACTGTGGCATATAAGATGAGAAGTATTATGTGATTCATGATACTATGGAAACTTTAAAACCCTCTGCCTATGCATTCCATGACATTTATAAATCCCATCTGGGTTTAGTAAATATAGAAATGTTCTATAGGCTGTCATTTACTTCCTTAGTTGGTGTAGTAGAGTAGCATCATGCACCAATTCTTGATCAGACATTGCCTCTGTTTATGAAGTTTCTAACTCAGAATGAGATCTGTCTCCTTTACAGCGGGAAGCTCGATTGGAACGCAACAAGAAACGGTCTTTCTTCTCATGAAATTATCTTCAGGCGTGTTTATTGATGTTGAAGTATGTAAGTTTAAATGCAATCCACACATTTATTAACGTTCTTGTAGCAGTAGATTTTTCTGGTGCTCATTTAGACAATGACTCAGCGTGTATTGCCCTCTTACTATCATTTGTCTATTAATAAAAGATGCATACCATCTTTATATTCAATCATCTCCATGTTGATCAATTTTCATTCTTGGAAGTGTAGGAATCTGTAAACCTTGATCCTCCATTTGATCTAAATATTGCAGGCTATAATCACGCTTAACCCTAGGGCTTTAAGTGGTCAAGAATTTACGACAGCAGCTGAGGTATTTATACCCTTTTTAAGAGGGCATAAGTTAAAACCTCTGATATTATATGATAGTTCTATGAAAAAGATCGGCCGTCTATTTGAGTATCTCTTTTGAAGAATTTTTTTAGTTCAACATGTAGTATGAGAATTCAATCTTCTTACCTTTAAGTTGAAAATACACCATCTTATGTGGTTTGATATTTTTTTAAAAAAAAAATGTTTTAAATTCAATTCTCCCAACCAATGTATGAAGAAATGTCTGATATTGATTTGAGTCTTACTTGATAGGTTATTGGTTATATATGAAGTTCCTAGTGAAGATGAATTTGTTGTGTATATATTTTAATTCAATACGTGGAAATAAGAATTCAAACCACCCACTTTCTGCTCAATGTTGATTGTATGCCTTGAAGTTATGTTCACATTTGGTTAATTCTATGAAATGTCTACCTACACTAAAAAAGACGATCCTTAACTTAAAAATTGCTCTCTATATGATTACTTGCGCAAACTATTTTGCTTTGACAATTTCAGTTACGTCATTTTCCAAACCATCATGGATTGGCATAA

mRNA sequence

ATGGCTTCCGCTTCTAGGGATCCGGCTCCGCCGTATGCCACTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTCTTGAAGAACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGCGTGTTTATTGATGTTGAAGTATGCTATAATCACGCTTAACCCTAGGGCTTTAAGTGGTCAAGAATTTACGACAGCAGCTGAGTTACGTCATTTTCCAAACCATCATGGATTGGCATAA

Coding sequence (CDS)

ATGGCTTCCGCTTCTAGGGATCCGGCTCCGCCGTATGCCACTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTCTTGAAGAACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGCGTGTTTATTGATGTTGAAGTATGCTATAATCACGCTTAACCCTAGGGCTTTAAGTGGTCAAGAATTTACGACAGCAGCTGAGTTACGTCATTTTCCAAACCATCATGGATTGGCATAA

Protein sequence

MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEACLLMLKYAIITLNPRALSGQEFTTAAELRHFPNHHGLA
Homology
[Close]
BLAST of Cla97C05G083640 vs. NCBI nr
Match: XP_022147041.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 3.2e-21
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS +RD APPYA+AARISDSPCYPQYSASLKCLEEHSSEK+KCQEHFDVYKECKKKE
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58

[Close]
BLAST of Cla97C05G083640 vs. NCBI nr
Match: XP_022924627.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 4.1e-21
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDP+PPY +AARISDSPC+PQYSASLKCLEEHSSE+SKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLKCLEEHSSERSKCQEHFDVYKECKKKE 58

[Close]
BLAST of Cla97C05G083640 vs. NCBI nr
Match: XP_004133972.1 (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN56698.1 hypothetical protein Csa_3G129550 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 5.4e-21
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDP PPY +AARISDSPCYPQYSASLKCLE HSSEKSKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKE 58

[Close]
BLAST of Cla97C05G083640 vs. NCBI nr
Match: XP_023527834.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.3 bits (264), Expect = 5.9e-20
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDP+PPY +AARISDSPC+ QYSASLKCLEEHSSE+SKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFLQYSASLKCLEEHSSERSKCQEHFDVYKECKKKE 58

[Close]
BLAST of Cla97C05G083640 vs. NCBI nr
Match: XP_022980456.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita maxima])

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDP PPY +AARISDSPC+ QYSASLKCLEEHSSE+SKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPPPPYPSAARISDSPCFLQYSASLKCLEEHSSERSKCQEHFDVYKECKKKE 58

[Close]
BLAST of Cla97C05G083640 vs. TrEMBL
Match: tr|A0A0A0L4K5|A0A0A0L4K5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-21
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDP PPY +AARISDSPCYPQYSASLKCLE HSSEKSKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKE 58

[Close]
BLAST of Cla97C05G083640 vs. TrEMBL
Match: tr|A0A2P5FPP8|A0A2P5FPP8_9ROSA (CHCH OS=Trema orientalis OX=63057 GN=TorRG33x02_045340 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.9e-17
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS++   APPY +AARISDSPC+PQY+ASLKCLE+ SS+KSKCQEHFDVYKECKKKE
Sbjct: 1  MASSTPASAPPYPSAARISDSPCFPQYTASLKCLEKFSSDKSKCQEHFDVYKECKKKE 58

[Close]
BLAST of Cla97C05G083640 vs. TrEMBL
Match: tr|V4U936|V4U936_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023064mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS      PPYA+AARISDS CYPQY+ASLKCLEE S++KSKCQEHFDVYKECKKKE
Sbjct: 14 MASGPATDTPPYASAARISDSQCYPQYTASLKCLEEFSTDKSKCQEHFDVYKECKKKE 71

[Close]
BLAST of Cla97C05G083640 vs. TrEMBL
Match: tr|V4U3S5|V4U3S5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023064mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS      PPYA+AARISDS CYPQY+ASLKCLEE S++KSKCQEHFDVYKECKKKE
Sbjct: 14 MASGPATDTPPYASAARISDSQCYPQYTASLKCLEEFSTDKSKCQEHFDVYKECKKKE 71

[Close]
BLAST of Cla97C05G083640 vs. TrEMBL
Match: tr|A0A2J6KTX9|A0A2J6KTX9_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_1X83981 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 1  MASASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          M S+S+D  PPY  AARISDS CY QY+ASLKCLEE SS+KSKCQEHFDVYKECKKKE
Sbjct: 1  MGSSSKDQLPPYPNAARISDSQCYSQYTASLKCLEEFSSDKSKCQEHFDVYKECKKKE 58

[Close]
BLAST of Cla97C05G083640 vs. Swiss-Prot
Match: sp|P38824|COX23_YEAST (Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=COX23 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.1e-04
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 0 

Query: 22  PCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKK 58
           PC      S +CLE +  ++SKCQE+FD Y+ECKK+
Sbjct: 103 PCEESSKLSFQCLERNDYDRSKCQEYFDAYRECKKQ 138

[Close]
BLAST of Cla97C05G083640 vs. TAIR10
Match: AT1G02160.2 (Cox19 family protein (CHCH motif))

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-17
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 0 

Query: 4  ASRDPAPPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEACLL 63
          +++  A  Y +AARISDSPCY QYSASLKCLEE  S+KSKCQ+HFDVYKECKKKE  ++
Sbjct: 2  STKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKEVVVV 60

The following BLAST results are available for this feature:
BLAST of Cla97C05G083640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147041.13.2e-2191.38cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia][more]
XP_022924627.14.1e-2189.66cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata][more]
XP_004133972.15.4e-2191.38PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sa... [more]
XP_023527834.15.9e-2087.93cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita pepo subsp.... [more]
XP_022980456.11.0e-1987.93cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita maxima][more]
BLAST of Cla97C05G083640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L4K5|A0A0A0L4K5_CUCSA3.6e-2191.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1[more]
tr|A0A2P5FPP8|A0A2P5FPP8_9ROSA6.9e-1779.31CHCH OS=Trema orientalis OX=63057 GN=TorRG33x02_045340 PE=4 SV=1[more]
tr|V4U936|V4U936_9ROSI1.5e-1679.31Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023064mg PE=4 ... [more]
tr|V4U3S5|V4U3S5_9ROSI1.5e-1679.31Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023064mg PE=4 ... [more]
tr|A0A2J6KTX9|A0A2J6KTX9_LACSA1.5e-1679.31Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_1X83981 PE=4 SV=1[more]
BLAST of Cla97C05G083640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P38824|COX23_YEAST9.1e-0450.00Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Saccharomyces cerev... [more]
BLAST of Cla97C05G083640 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02160.24.4e-1769.49Cox19 family protein (CHCH motif)[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009069Cys_alpha_HP_mot_SF
IPR010625CHCH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006301 postreplication repair
biological_process GO:0022900 electron transport chain
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016731 oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G083640.1Cla97C05G083640.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.287.1130coord: 13..67
e-value: 2.5E-9
score: 38.8
NoneNo IPR availablePROSITEPS51808CHCHcoord: 20..62
score: 14.818
IPR010625CHCHPFAMPF06747CHCHcoord: 23..57
e-value: 1.9E-8
score: 34.1
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILYSSF47072Cysteine alpha-hairpin motifcoord: 21..57

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G083640Cla021390Watermelon (97103) v1wmwmbB206
Cla97C05G083640Csa3G129550Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G083640MELO3C006281Melon (DHL92) v3.5.1mewmbB434
Cla97C05G083640ClCG05G003010Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G083640CSPI03G10460Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G083640Cucsa.256760Cucumber (Gy14) v1cgywmbB452
Cla97C05G083640CmaCh14G019200Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G083640CmoCh14G019750Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G083640Lsi05G018750Bottle gourd (USVL1VR-Ls)lsiwmbB333
Cla97C05G083640CsGy3G010570Cucumber (Gy14) v2cgybwmbB196
Cla97C05G083640Carg14903Silver-seed gourdcarwmbB0647
Cla97C05G083640CsaV3_3G010620Cucumber (Chinese Long) v3cucwmbB206
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G083640Watermelon (97103) v2wmbwmbB054
Cla97C05G083640Watermelon (97103) v2wmbwmbB137
Cla97C05G083640Silver-seed gourdcarwmbB0229
Cla97C05G083640Silver-seed gourdcarwmbB1008
Cla97C05G083640Silver-seed gourdcarwmbB1131
Cla97C05G083640Cucurbita maxima (Rimu)cmawmbB366
Cla97C05G083640Cucurbita maxima (Rimu)cmawmbB856
Cla97C05G083640Cucurbita moschata (Rifu)cmowmbB350
Cla97C05G083640Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G083640Bottle gourd (USVL1VR-Ls)lsiwmbB015
Cla97C05G083640Melon (DHL92) v3.6.1medwmbB423
Cla97C05G083640Watermelon (Charleston Gray)wcgwmbB269
Cla97C05G083640Wax gourdwgowmbB041
Cla97C05G083640Wax gourdwgowmbB180