Lsi05G018750 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G018750
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCytochrome c oxidase-assembly factor COX23, mitochondrial
Locationchr05 : 25952645 .. 25955415 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTCCTCTCGATACAATTACGTATAAAAGGAGATTGATTCTCTTGCTTTCTCATCGGAATTTCAGGCAGCCATTTTAACCGACCTCTATTTTTCCACCGAGACAGAGTGAGCTTTTCCGCCATGGCTTCCACTTCTAGGGATCCGGCTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTAGGTTTCACTCTCGTACTCCCTCTCCATTATTCTCAATTTTTTTCGTTTTGCTTTGATTCTCCGCCAAATATTTACGTGTCTGTGCTACCATTATCTCACCATTTGGACTTCTTCTACACTGGTTCACTTGAGAATGATTGCGTGCTGCTGTGCATCAATTTTTTCAGTTTGTGTTCTGGATGGTTAAACTCTCGAATTTGTTGTTGGCTGTGATCGTGCAAACTCTAATTTTCGCGGCGATTCTCTATGCTCTGTTAGTTGAATAATTGGTTAGCCTGTTTTATTTCATTTTCTAGGGATGCTATTTCCATCCAATTTAGGTCAATTGATGAAGAGGAAGCAAACTTAAATGTATTATTGATCGGATGATAATCTTAAAAACAAAATAGGGTTTACCAGGGTATTAGTTGATAGAGCGCTCGTGAGAGTTCTTAGAGTGGCTATTCTAACTATGGCAATGGTGGAAAAGGAACTTTTACTAGGATATTGAAGCCGAAAGCTCTTAATCCCCCGTTCCTTAGGGCCAAGTTCTTATTTAAAATATCAAAGTAGGAAAGAATGTTAGATGTTTAATGCAGAAGCCTCGAGCTGCAACTTAAGGAAAGATTGTTAACGGAAAGCATGCATAACTGGTAATGGCTGATAAATCAGGTGTAAAGTGAAATTTTAATTTGAATTTGTAAATGAGTACTATCGTTATTGATCCTGATAAAGTGTAGCTTAATCTTTGGTGTGTTATAAATCATCCAATGAGAAGTTGGTGTTTAGAATACTAATTTTGTAGATTTTGAATTTTATTTTTATGTCAGAGAACATTTTGAACTTCTTATCAAAGAAACTCTCTTTTCCAAATGCTATAGGTCTTGAAGAACATAGCTCCGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATGTTCTTTTCTTAGTTATCACATGAAATTGGAATGGAGGAACATTTCATCGTGTGTGGTACTGTTACTGGAAGCATACACTCACTATTTATGGGAATTTGACTTAAACTGAGATGATGGTACTAACTAACCAAGGTTGCAATTGCTCTGATTTGACTAGTTACTTAACTTGTTCTGTTTTTTGCCTCTTTGGAGTCTGCTCGTTTGCTTGTGACGTTAATGGATCAAGGAAATTTAAACAATATCCTCATCTCATTTGGACATAATTGGATAACCAGTGTGTCATTGAGTTAGTTATGTGCTCAATCTTAAAGGAATGTGTTAAAATATGATTTTGGTCCTCACAAGAAGTTCTATTTTGATCTTTCAAATTTTAGTAATTTCTATATAAGATATTCTATCCTAGTTAAAATCTGTAACGAAGAAGTGACTGGACTAATTTTCTGATATCAGATTTATATGCAAGTGATGTATTACATGTCTATGTTGTCTCTTCCATGTGATAACCTTTTTTTAGTTATATGTTGATCTGCAACAATATAGAATGCCATTTATTTTTTGTATGCAAGTCTTTGACTCAGATTTTAATGATAGATTGAATTTGAAATTATTGAAGCTTGAGGGTCTAACATAAAAACTTTTTGGAACTTTGGGTTTTAACTTCAAGAATTAAAATTACTCTATGACCTGGAAGATACATGGCATATAAGGTGAGAAGTATATGTGGTTCATGATACTATGGAAACTTTAAAACCCTCTTCCTGTGTATTCCATAACATTTATGAATCCTATCTGGGTTTAGTAGATATAGAAATGTTCCATAGGCTGTCATTTAATTCCTTGGTTAGTAGAGTAGCATCATGCACCAACTCTTAATAAGACATTGCCTCGTAACGCGACTGAGATCTGTCTCCTTTACAGCGGGAAGATCGATTGGAACGCAACAAGAAACGGTCTTTCTTCTCATGAAATTGTTTCTTGATGTTGAAGTTATGTAAGTTTAATATACAATCTACACACGTTTATTAACCTTCTTGTAGCAGTAGATTTATCTGGTGCCTCATTGAGACAATGACTCGGCATGTATTGCCCACTTACTATCATTCGTCTATTAATAAAAGATGCATACCATCTTTATGTTCAATTATCTCCATGTTGATCAATTTTCATTCTTAAAGTGTAGGAATCTGTAAACATTGATCCTCCATTTGATCTAAATAGTGCAGGCTACAATCACGATTAACCCGTTAGGCGGTCAAGAATTTACGACAGCAGTTGAGGTATTTACCTTTTTTAAGAGGGCGTACGTTAAAAGCTCCGATGTTATATGATAGTTCTATGATATACAATGATTTCTAACTTTTAAGTTGAAAATACAATGTTTTATTCGATTTGATACTTTTTTAAAAAAGGGTTTAAAATTCAAATCTCCCAACCAATATATGAAGAAATGACTGATATTGATTTGAGTCTTATTTGATAGGCTATTGATTATATTAGAAGTTTATAGTGAAGATGAATTATAATTCAAACCACCCATTTTCTGCTCAATGATGATCGTATGCCTTGAACTTATGTTCACATTTGGTTTATTCTATGAAATGTCTACC

mRNA sequence

GGGTCCTCTCGATACAATTACGTATAAAAGGAGATTGATTCTCTTGCTTTCTCATCGGAATTTCAGGCAGCCATTTTAACCGACCTCTATTTTTCCACCGAGACAGAGTGAGCTTTTCCGCCATGGCTTCCACTTCTAGGGATCCGGCTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTCTTGAAGAACATAGCTCCGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGAATCTGTAAACATTGATCCTCCATTTGATCTAAATAGTGCAGGCTACAATCACGATTAACCCGTTAGGCGGTCAAGAATTTACGACAGCAGTTGAGGCTATTGATTATATTAGAAGTTTATAGTGAAGATGAATTATAATTCAAACCACCCATTTTCTGCTCAATGATGATCGTATGCCTTGAACTTATGTTCACATTTGGTTTATTCTATGAAATGTCTACC

Coding sequence (CDS)

ATGGCTTCCACTTCTAGGGATCCGGCTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTACAGCGCTTCCCTGAAATGTCTTGAAGAACATAGCTCCGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGAATCTGTAAACATTGATCCTCCATTTGATCTAAATAGTGCAGGCTACAATCACGATTAA

Protein sequence

MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEESVNIDPPFDLNSAGYNHD
Homology
[Close]
BLAST of Lsi05G018750 vs. TrEMBL
Match: A0A0A0L4K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 1 

Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MASTSRDP PPY SAARISDSPCYPQYSASLKCLE HSSEKSKCQEHFDVYKECKKKE  
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 VNID 65
            ++
Sbjct: 61 ARLE 64

[Close]
BLAST of Lsi05G018750 vs. TrEMBL
Match: A0A067H3E1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034917mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-17
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1 

Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MAS      PPYASAARISDS CYPQY+ASLKCLEE S++KSKCQEHFDVYKECKKKE  
Sbjct: 1  MASGPATDTPPYASAARISDSQCYPQYTASLKCLEEFSTDKSKCQEHFDVYKECKKKERE 60

Query: 61 VNID 65
            ++
Sbjct: 61 ARLE 64

[Close]
BLAST of Lsi05G018750 vs. TrEMBL
Match: V4U3S5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023064mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-17
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1 

Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MAS      PPYASAARISDS CYPQY+ASLKCLEE S++KSKCQEHFDVYKECKKKE  
Sbjct: 14 MASGPATDTPPYASAARISDSQCYPQYTASLKCLEEFSTDKSKCQEHFDVYKECKKKERE 73

Query: 61 VNID 65
            ++
Sbjct: 74 ARLE 77

[Close]
BLAST of Lsi05G018750 vs. TrEMBL
Match: A0A0D2SYR1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G110500 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.1e-17
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 5  SRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEESVNID 64
          SR   PPY SAARI+DSPC+PQY+ASLKCLEE+ S+KSKCQEHFDVYKECKKKE    ++
Sbjct: 3  SRAATPPYPSAARIADSPCFPQYTASLKCLEEYGSDKSKCQEHFDVYKECKKKEREARLE 62

[Close]
BLAST of Lsi05G018750 vs. TrEMBL
Match: A0A103Y109_CYNCS (CHCH-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021201 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.6e-17
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1 

Query: 4  TSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 61
          +S+D  PPY +AARISDS CYPQY+ASLKCLEE SS+KSKCQEHFDVYKECKKKE S
Sbjct: 3  SSKDQLPPYPNAARISDSQCYPQYTASLKCLEEFSSDKSKCQEHFDVYKECKKKEVS 59

[Close]
BLAST of Lsi05G018750 vs. TAIR10
Match: AT1G02160.2 (AT1G02160.2 Cox19 family protein (CHCH motif))

HSP 1 Score: 84.7 bits (208), Expect = 2.7e-17
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 4  TSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          +++  A  Y SAARISDSPCY QYSASLKCLEE  S+KSKCQ+HFDVYKECKKKE
Sbjct: 2  STKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

[Close]
BLAST of Lsi05G018750 vs. NCBI nr
Match: gi|449432370|ref|XP_004133972.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-22
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 1 

Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MASTSRDP PPY SAARISDSPCYPQYSASLKCLE HSSEKSKCQEHFDVYKECKKKE  
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 VNID 65
            ++
Sbjct: 61 ARLE 64

[Close]
BLAST of Lsi05G018750 vs. NCBI nr
Match: gi|1021572451|ref|XP_016177335.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 [Arachis ipaensis])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-19
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 1 

Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MAS S+   PPYASAARISDSPC+PQY+ASLKCLEE SS KSKCQEHFDVYKECKKKE  
Sbjct: 1  MASNSKGSTPPYASAARISDSPCFPQYTASLKCLEEFSSNKSKCQEHFDVYKECKKKE-- 60

Query: 61 VNIDPPFDLN 71
          ++ + PF+ N
Sbjct: 61 LHNEQPFESN 68

[Close]
BLAST of Lsi05G018750 vs. NCBI nr
Match: gi|1012232009|ref|XP_015938627.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 [Arachis duranensis])

HSP 1 Score: 101.3 bits (251), Expect = 7.8e-19
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1 

Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEES 60
          MAS S+   PPYASAARISDSPC+PQY+ASLKCLEE SS KSKCQEHFDVYKECKKKE  
Sbjct: 1  MASNSKGSTPPYASAARISDSPCFPQYTASLKCLEEFSSNKSKCQEHFDVYKECKKKERE 60

Query: 61 VNID 65
            ++
Sbjct: 61 ARLE 64

[Close]
BLAST of Lsi05G018750 vs. NCBI nr
Match: gi|1012232013|ref|XP_015938628.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X2 [Arachis duranensis])

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-18
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1 

Query: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS S+   PPYASAARISDSPC+PQY+ASLKCLEE SS KSKCQEHFDVYKECKKKE
Sbjct: 1  MASNSKGSTPPYASAARISDSPCFPQYTASLKCLEEFSSNKSKCQEHFDVYKECKKKE 58

[Close]
BLAST of Lsi05G018750 vs. NCBI nr
Match: gi|1009170379|ref|XP_015866168.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 97.8 bits (242), Expect = 8.6e-18
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 5  SRDPAPPYASAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEESVNID 64
          S+   PPY SAARISDSPCYPQYSASLKCLEE+ S+KSKCQEHFD+YKECKKKE    ++
Sbjct: 37 SKSSTPPYPSAARISDSPCYPQYSASLKCLEEYQSDKSKCQEHFDIYKECKKKEREARLE 96

The following BLAST results are available for this feature:
BLAST of Lsi05G018750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G018750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4K5_CUCSA1.1e-2285.94Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129550 PE=4 SV=1[more]
A0A067H3E1_CITSI3.0e-1773.44Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034917mg PE=4 SV=1[more]
V4U3S5_9ROSI3.0e-1773.44Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023064mg PE=4 SV=1[more]
A0A0D2SYR1_GOSRA5.1e-1773.33Uncharacterized protein OS=Gossypium raimondii GN=B456_008G110500 PE=4 SV=1[more]
A0A103Y109_CYNCS6.6e-1780.70CHCH-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021201 PE=4 SV=1[more]
BLAST of Lsi05G018750 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02160.22.7e-1776.36 Cox19 family protein (CHCH motif)[more]
BLAST of Lsi05G018750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432370|ref|XP_004133972.1|1.5e-2285.94PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sa... [more]
gi|1021572451|ref|XP_016177335.1|3.5e-1974.29PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 ... [more]
gi|1012232009|ref|XP_015938627.1|7.8e-1976.56PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X1 ... [more]
gi|1012232013|ref|XP_015938628.1|2.3e-1884.48PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial isoform X2 ... [more]
gi|1009170379|ref|XP_015866168.1|8.6e-1875.00PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial-like [Zizip... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010625CHCH
IPR009069Cys_alpha_HP_mot_SF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006301 postreplication repair
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G018750.1Lsi05G018750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009069Cysteine alpha-hairpin motif superfamilyGENE3DG3DSA:1.10.810.10coord: 20..58
score: 2.
IPR009069Cysteine alpha-hairpin motif superfamilyunknownSSF47072Cysteine alpha-hairpin motifcoord: 21..57
score: 8.89
IPR010625CHCHPFAMPF06747CHCHcoord: 23..57
score: 1.
NoneNo IPR availablePANTHERPTHR21588COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6coord: 10..61
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G018750Csa3G129550Cucumber (Chinese Long) v2culsiB209
Lsi05G018750CSPI03G10460Wild cucumber (PI 183967)cpilsiB207
Lsi05G018750Cucsa.256760Cucumber (Gy14) v1cgylsiB415
Lsi05G018750CmoCh14G019750Cucurbita moschata (Rifu)cmolsiB233
Lsi05G018750Cla021390Watermelon (97103) v1lsiwmB365
Lsi05G018750MELO3C006281Melon (DHL92) v3.5.1lsimeB378
Lsi05G018750ClCG05G003010Watermelon (Charleston Gray)lsiwcgB335
Lsi05G018750Cla97C05G083640Watermelon (97103) v2lsiwmbB333
Lsi05G018750CsGy3G010570Cucumber (Gy14) v2cgyblsiB196
Lsi05G018750Carg14903Silver-seed gourdcarlsiB565
Lsi05G018750CsaV3_3G010620Cucumber (Chinese Long) v3cuclsiB228
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G018750Bottle gourd (USVL1VR-Ls)lsilsiB011
Lsi05G018750Cucurbita maxima (Rimu)cmalsiB245
Lsi05G018750Cucurbita maxima (Rimu)cmalsiB356
Lsi05G018750Cucurbita maxima (Rimu)cmalsiB764
Lsi05G018750Cucurbita moschata (Rifu)cmolsiB345
Lsi05G018750Cucurbita moschata (Rifu)cmolsiB757
Lsi05G018750Cucurbita pepo (Zucchini)cpelsiB122
Lsi05G018750Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G018750Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G018750Wild cucumber (PI 183967)cpilsiB128
Lsi05G018750Watermelon (Charleston Gray)lsiwcgB343
Lsi05G018750Melon (DHL92) v3.6.1lsimedB396
Lsi05G018750Silver-seed gourdcarlsiB206
Lsi05G018750Silver-seed gourdcarlsiB878
Lsi05G018750Silver-seed gourdcarlsiB983
Lsi05G018750Cucumber (Chinese Long) v3cuclsiB244
Lsi05G018750Watermelon (97103) v2lsiwmbB341
Lsi05G018750Wax gourdlsiwgoB445