MELO3C006125 (gene) Melon (DHL92) v3.5.1

NameMELO3C006125
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCleavage and polyadenylation specificity factor subunit 5
Locationchr6 : 1206923 .. 1212385 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGCCTGACATTTAAACAAATTAACCCGCAAAGCTCGCAAGAACTGATCGCGGGTCATCACCAAGGTTTCTTCTTCTTTACTTCTTCCCGGCCTTGCTCGGCAGGTGCAGAGTGAACACAGCCATGGTGACGTCGCCGGTGGTGAACACGTATCCACTTTCCAGCTATACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCTGTCGCTGATCGTCTTGCTCGCATGAAAGTCAAGTACTGCCAATTTTCTCGATTCCTTAAACCCTAATTTTTGTTGCTTTTTAACGTCTTAGGGATTTATTGTTCTTGAAAGTTAGGAACTCTGGCCGTTTCCTGTTGTGGATTCGTGGTCATTTTACGTTTGATGTGTATACCACTACATTGAATCGTGGGAAATGATGTATGTTTATGATTATACTAGGCCATTTGTTGGGAGATTTGATCTTAGAGTTTTATAAAATAACATGACACGAAGTATAGAACTGAGTTTGTAGCGTGTTTCTGATTTCAGGAAAACGACTGAGCCTGGTATGGAGGGCTTTTTTCCTTGGGGGGGGGGGGTAATAATGTCGTGAATTAAATTCTTCGAAACACAGTTTTGGATTAAAGTGTATTATGTATATCATATTCAAGCCGGTGCTTCATTGGCGAATTTAATGCATTCTTCTTGTTGTTTTTTATTTTTATTTTTTATATTCCATTTATTGGCTTTGGAGGAAGTTGAATGATTAACATGTACTGGTGTTTGGTTCACAGCTATATGAAGGAAGGCATGAGAACAAGTGTTGAAGCAATTCTGCTGGTTAGTATGTACCTTCTTCACGTTTCATCTTAATGTACTCAGGGCCGTGCTTTGTTATTTCTTTCTTTCTTTCTTTTTTTAAATAGCACTTAAATAGATCATTAGAACGTAGGGTTACTAGCTGGATGTCAGGGTATATGTCTCTTTTTCTTATAAAAAAAATGAATACACTTTAACATGCTGAAGTTCTGTTTCTTATATAAAAGAAACATGTTGAATCCTTTATTCTCCTATTTTTTCTTTACCTGAGTGGTACACATTGAATAGAAAGTCAAGGATTACTAGAAGTCTAAATTGCAACATTGATCATTGTCATCTTTACCAAAAGTAAGCATCCGATGAAATATTTGTATATTTTAACATGGGATCTCCCCGCTTCTATTTGCTTCCTACTGGAAAATTTTGACGCTTAGGGATGCCTCATTCTCTCTAAAGCTGGTAGGGTGGCCCTTGCCCGACCCAATCCCTCCCCAATAGCTTCCCTTGATATCACTTTTCTTTCCTAAGAGCTCCCAAGAACATTACAATTTCTATGGAAATATTTAACAAAGATCGTGTGGGATGGTGGTGTAATGGTAGTTACGAGTATAATAGTAACTTAGTTATATGAGCTTGGACAACACCCCCAATCGCCCTTGGGGTTTGGGGGTGGGCTCCCTTGAACATTGAAATACCTCTCTTCTCACCAAATGGATTTGGAGATTTACTCAAGACAAGAGTTCGTTCTGGCACAAGGTTATTTCTAGCATTTTTGTGTCAAACTCATGGGTTGGATGGTTGCTGACTTAAGAAACGAAAAAAAGAAACAAGCCTTGAATGGATATTTTAGGAATTTCCCCTTCTTTGCTTGTTTTTCCAAATTCAAGGCAAGTTATGGTAGGAACATTCGCCTTTGGCATGATATTTGGGTCAATCAAGATCCTCTGAAAGACTACTTTTCTGACATGCACGCTGTATCTTTTAAAAAGGAGCCCAATGTCTTTGATTCTTGGCACGACAATTACCAGGTGTGTGGCTATGGCCTTAAATAGGGCTTTTAGATTGTGAGATGTATAGTTTATCATTATTATTATTTTTCTATTTTTATATCTACGAGTGTTTGGGCCAGCTCATGCACATGTCAATTATTCTCAAATCATAGATAGGTGGTTCCACACCCTGGTTGTACTAATATCTACACACACTAAAAAAATTATAGGTAGGTGGCCAACATGAAATAAACTTGTGATCCCTTAGCCCTTCAGCTCTTTTATGTTCCTTCATCTACCACTCGATCAACCCATGATGGTTGATTGTGAGATGGATAGTTGTGTTGGCCTTGTGGCAAACCTTAACTCCATTTAGCTAGGAGAGGGTGTGGATTAATTCTTTGGTACCTTGAAGGCTTTGGTATATACTCTAGTAATTCGACCTTTCAAAACCTTGCTACTAAGTGTCCTAGGGCCAATACAACTCTAACAAGCAGAATTTGGAAGCCTAAATCCCTGAAAAAGATCAAAATCCTTGGTTTTTAGAAGTCTAAATATTGACGACAAGCTTCAAAGAAAATTTAGAAGGCTGTCTCCTATGCCTTTGAGTTGTAGGATGTGCTTGCATATGGTGGAAAACCCGGATCAACTTTTCCTCAATTGTTTAACTTTGTCTCAAGATGGTGGAGTTACTTGGTTGGGATTTAGGTGTCTTCTTGTTTCCCTAAGGAAGTGGATGATTGGCTTATGGAAGGTATTCACACGTGTAACTTGAAAGGAAAAGCCAAGTTTTTCGGAGGTGGCCACTAGGGGGAAAGCATCAATCATTTCAATTGGCATCAGTTTTGGCCTCAATCAGTTTTGTTCGAATTAATGAGAACTGTACTGTGCTAAGTGGAATGCTGGATATGATTACAGCCTACAACCAGGTTTTTCTAGTCGTTAACATAATAAGAAACGCCATCAAGATTAATCAATTGTAATATGCTGATGATATCTCTATTTAATGTGCCTACTATAATGCTGATGTTGAAGAATCTGAGTAAGGTGCTGTACCATTTGAAGCCAGCATTAATCTGGACTGTTTGCTGTTATCTCAGTCGTGCTTCAGTCCCTTGTTGCCAAGCTGGAGATTGACTAGGACTTCGATTCCTTGTGATGTAGAAATATGGATTCAATCAGGGAGGTGAAATGCAACTAGGAGAGATAATACAATCAATTGGAAATGGAGGGTCTCTAGAAGCTCGATTTTAAAAGAAATCTGTTGAATGCTGAAATACAGGGGGCAAGTGGCCTGTGGCTGGCAGGCAGCTTGACCTTTCAAATTTTGATAAGAAAGAAACATGTTGATGAATCAAAAGGAGCCCAGAAACAGGAGGGTGAGCAGTCCAATCCCAAAGCTAAAGCAGTTTGCAGAATAGGACATCAATTATACAAGCCACACTATGATTACAACAAACATCGCTCTTAGGGTATATTGCAGGGGATTAACATGCAGGATGCTACCCCACTTTGCACCCCTTAGACTTATTTTTTAAGATACAATAGTTTCTCCAGCCTATAATTTCAAAACCGTGGTTTCAATAGAATTAGACAAGAGATTTCTAGCTTTCTGCCTTTTTTTTTTTTTGAGTTGGGCACTGAATGTTTCTTAGTCATAAACATTCTCCTTGGTGCAATTTAGTAACTGATATTCAACAGTGGCATCACTTTATCTTTTCTTATTTTCCCCTTTCTATTCCACAGGTGCAAGAACATAAACATCCCCACATTCTACTATTGCAAATAGGCAATACCTTTTGCAAGCTCCCTGGAGGACGGTTGAAGCCAGGAGAAAATGGTAACATTTTGTGTACAATTGAAGCCCCGGACATTCCATTGAGTAAAATCTCTCTCTCATGTTTATTTTAACATCTGCAGAAATTGAAGGTTTAAAGAGGAAGCTCACAAGCAAACTGGGTGCAAACTCGCCCTCACTCCAGCCTGATTGGCAGGTTCAAATCATTTCTTCTATTTTTATGTTCAAATCTAACTAATGAAACTATATATGTTCCTACGAGGAATTAGCTTCTTCATTTTTAATTTCCTGCAGATTGGTGAATGTGTGGCGATTTGGTGGAGACCAAACTTTGAAACTGTCATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGTATGTGGACACCCTCCCACTACAGTTTTTTTTTGGGTGGTAACTTTGATCAAAGTTTAAATGATAGATATTTCTGGAAAACTTATAATAAAGAAAAGTTACTTAAATTAATAAACTAAACATTTTACACTTCTCAAATAAATTAGAAAGGTTTATTGTTTATATTATGTAATGCACATCAACATTTTGTTACTTTAAATATGTTTCATCAATTTTTTTATTGCTATAGTGGAAATGTTGTTTTGCCCCCTATGTATTGAGCTCTCGATCATGTGTATGGAAATTTAACACACTGACTTTGATAGGGAAGAATATAGGTATCATATATATATATTAATACGTATCTTTCTTTTTTAAATGGATTCTGCTTGTTGCTTTTTTCGACCTTCATTGTGTGAGGATTGTAGAAAATTCCCATAGTTCATTATACAAGCTGATCTACGGCCTCCCTATTCTCCCGTTCCTTCCATCTTATTTCAATTAGGATTGTTCAGAGAGCACCAATCCTATTAAAAATAAGCTTTTTATCTTTTCTTTATACTTGACTCTTACCGAATACTTTCTTTTTCCATTTCCATACGGAAAAAGATAAAATCTTAATCAAGGTTTTGGATGATCCAGGAATGCAAAAAACTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCCAAAAATTTGAAGCTGCTTGCAGTTCCCTTGTTTGAGCTCTATGACAATGTGCAGGTATGTTACATTTTTTCTTAGTATAAACAAATTTAGTGCCTATTGATTAATTTTATCGTATTGGACAATGTGGAAAACCTGTTGATCTATAAGCAATTAGTGTGTGGTGAGTATGTGGTCTGGTTGATATCAAGGGAAAAATAAATTATAGATTGATTTTCTGGATGCTCGATGAAAATGATAGTTCCTGTGAATCCCATTAGCCTTTTGTCATGCTATCTATAAGCTAAATAATAGTTTTTGGTTTTTTGCACTTGATCACAGAGATATGGACCAGTTATCTCGACGATACCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGGTTACAGTACAAGAGCCCCTTAAATTTGTAGCAGGAATTGACTTCGATTTGCTTGAGATAGTTAGAAAAGAAACTTAGAGGACATTATCAACCTTGCTTGAGATAGATTAGCATACTTGTGATAGACTTTCTTGTTCTTGACCTTTTTGTCGATGTGTTTGCGAGGCAAAATTATGTTGCTTGTAACAAGATTCAACTGAGTTTGTGTATCATTTTAGCACAATTAAAGTTTTAGAAGTGTAATGTATGTCTATCGAATCAATTCTTAAAAGCCAAAAGCAAGATTGCTAAATGGTTATTGGCATGATCTTCTTGAGATGTAGGAGGTTCGAACCCGCGTCCCCAGACGTTTTGGTTTCCAGCTTCCGAGACGATGATAGTATTAGCTCTTTGTATCTCTAGTTTAATGCTATTTCAGTCATTCTTGTGGGATAAC

mRNA sequence

ATCGCCTGACATTTAAACAAATTAACCCGCAAAGCTCGCAAGAACTGATCGCGGGTCATCACCAAGGTTTCTTCTTCTTTACTTCTTCCCGGCCTTGCTCGGCAGGTGCAGAGTGAACACAGCCATGGTGACGTCGCCGGTGGTGAACACGTATCCACTTTCCAGCTATACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCTGTCGCTGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAAGGCATGAGAACAAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAACATCCCCACATTCTACTATTGCAAATAGGCAATACCTTTTGCAAGCTCCCTGGAGGACGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAGCTCACAAGCAAACTGGGTGCAAACTCGCCCTCACTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCGATTTGGTGGAGACCAAACTTTGAAACTGTCATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGAATGCAAAAAACTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCCAAAAATTTGAAGCTGCTTGCAGTTCCCTTGTTTGAGCTCTATGACAATGTGCAGAGATATGGACCAGTTATCTCGACGATACCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGGTTACAGTACAAGAGCCCCTTAAATTTGTAGCAGGAATTGACTTCGATTTGCTTGAGATAGTTAGAAAAGAAACTTAGAGGACATTATCAACCTTGCTTGAGATAGATTAGCATACTTGTGATAGACTTTCTTGTTCTTGACCTTTTTGTCGATGTGTTTGCGAGGCAAAATTATGTTGCTTGTAACAAGATTCAACTGAGTTTGTGTATCATTTTAGCACAATTAAAGTTTTAGAAGTGTAATGTATGTCTATCGAATCAATTCTTAAAAGCCAAAAGCAAGATTGCTAAATGGTTATTGGCATGATCTTCTTGAGATGTAGGAGGTTCGAACCCGCGTCCCCAGACGTTTTGGTTTCCAGCTTCCGAGACGATGATAGTATTAGCTCTTTGTATCTCTAGTTTAATGCTATTTCAGTCATTCTTGTGGGATAAC

Coding sequence (CDS)

ATGGTGACGTCGCCGGTGGTGAACACGTATCCACTTTCCAGCTATACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCTGTCGCTGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAAGGCATGAGAACAAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAACATCCCCACATTCTACTATTGCAAATAGGCAATACCTTTTGCAAGCTCCCTGGAGGACGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAGCTCACAAGCAAACTGGGTGCAAACTCGCCCTCACTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCGATTTGGTGGAGACCAAACTTTGAAACTGTCATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGAATGCAAAAAACTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCCAAAAATTTGAAGCTGCTTGCAGTTCCCTTGTTTGAGCTCTATGACAATGTGCAGAGATATGGACCAGTTATCTCGACGATACCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA

Protein sequence

MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT*
BLAST of MELO3C006125 vs. Swiss-Prot
Match: CFIS2_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.2e-70
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS +L PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFET+MYPYCPPHITKPK
Sbjct: 121 RPNFETMMYPYCPPHITKPK 140

BLAST of MELO3C006125 vs. Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.3e-43
Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 1

Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPK 141
             YPY P HITKPK
Sbjct: 157 PQYPYIPAHITKPK 169

BLAST of MELO3C006125 vs. Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.3e-43
Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 1

Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPK 141
             YPY P HITKPK
Sbjct: 157 PQYPYIPAHITKPK 169

BLAST of MELO3C006125 vs. Swiss-Prot
Match: CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.3e-43
Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 1

Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPK 141
             YPY P HITKPK
Sbjct: 157 PQYPYIPAHITKPK 169

BLAST of MELO3C006125 vs. Swiss-Prot
Match: CPSF5_PONAB (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.3e-43
Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 1

Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPK 141
             YPY P HITKPK
Sbjct: 157 PQYPYIPAHITKPK 169

BLAST of MELO3C006125 vs. TrEMBL
Match: A0A0A0L8Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.1e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFETVMYPYCPPHITKPK
Sbjct: 121 RPNFETVMYPYCPPHITKPK 140

BLAST of MELO3C006125 vs. TrEMBL
Match: A0A061G0V3_THECC (Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN=TCM_015155 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.7e-75
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFET+MYPYCPPHITKPK
Sbjct: 121 RPNFETIMYPYCPPHITKPK 140

BLAST of MELO3C006125 vs. TrEMBL
Match: V4U7E9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.7e-75
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFET+MYPYCPPHITKPK
Sbjct: 121 RPNFETIMYPYCPPHITKPK 140

BLAST of MELO3C006125 vs. TrEMBL
Match: A0A067F1N4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039176mg PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 3.7e-75
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 45  MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 104

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 105 HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 164

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFET+MYPYCPPHITKPK
Sbjct: 165 RPNFETIMYPYCPPHITKPK 184

BLAST of MELO3C006125 vs. TrEMBL
Match: A0A0D2PAK4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.9e-74
Identity = 134/140 (95.71%), Postives = 137/140 (97.86%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MV SPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVMSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFET+MYPYCPPHITKPK
Sbjct: 121 RPNFETIMYPYCPPHITKPK 140

BLAST of MELO3C006125 vs. TAIR10
Match: AT4G25550.1 (AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit)

HSP 1 Score: 265.0 bits (676), Expect = 2.9e-71
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS +L PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFET+MYPYCPPHITKPK
Sbjct: 121 RPNFETMMYPYCPPHITKPK 140

BLAST of MELO3C006125 vs. TAIR10
Match: AT4G29820.1 (AT4G29820.1 homolog of CFIM-25)

HSP 1 Score: 171.0 bits (432), Expect = 5.8e-43
Identity = 78/135 (57.78%), Postives = 99/135 (73.33%), Query Frame = 1

Query: 6   VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHIL 65
           +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LLV+  KHPH+L
Sbjct: 28  MVDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVL 87

Query: 66  LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFE 125
           LLQ  N+  KLPGGRL+PGE++IEGLKRKL SKL  N       +++GEC+ +WWRPNFE
Sbjct: 88  LLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFE 147

Query: 126 TVMYPYCPPHITKPK 141
           T+MYP+ PP+I  PK
Sbjct: 148 TLMYPFLPPNIKHPK 162

BLAST of MELO3C006125 vs. NCBI nr
Match: gi|449432171|ref|XP_004133873.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 4.4e-77
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFETVMYPYCPPHITKPK
Sbjct: 121 RPNFETVMYPYCPPHITKPK 140

BLAST of MELO3C006125 vs. NCBI nr
Match: gi|641841106|gb|KDO60020.1| (hypothetical protein CISIN_1g039176mg, partial [Citrus sinensis])

HSP 1 Score: 288.9 bits (738), Expect = 5.4e-75
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 45  MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 104

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 105 HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 164

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFET+MYPYCPPHITKPK
Sbjct: 165 RPNFETIMYPYCPPHITKPK 184

BLAST of MELO3C006125 vs. NCBI nr
Match: gi|567858442|ref|XP_006421904.1| (hypothetical protein CICLE_v10005929mg [Citrus clementina])

HSP 1 Score: 288.9 bits (738), Expect = 5.4e-75
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFET+MYPYCPPHITKPK
Sbjct: 121 RPNFETIMYPYCPPHITKPK 140

BLAST of MELO3C006125 vs. NCBI nr
Match: gi|1009122478|ref|XP_015878023.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ziziphus jujuba])

HSP 1 Score: 288.9 bits (738), Expect = 5.4e-75
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFET+MYPYCPPHITKPK
Sbjct: 121 RPNFETIMYPYCPPHITKPK 140

BLAST of MELO3C006125 vs. NCBI nr
Match: gi|590672648|ref|XP_007038670.1| (Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao])

HSP 1 Score: 288.9 bits (738), Expect = 5.4e-75
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPK 141
           RPNFET+MYPYCPPHITKPK
Sbjct: 121 RPNFETIMYPYCPPHITKPK 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CFIS2_ARATH5.2e-7087.14Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE... [more]
CPSF5_BOVIN9.3e-4360.45Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT2... [more]
CPSF5_HUMAN9.3e-4360.45Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUD... [more]
CPSF5_MOUSE9.3e-4360.45Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nud... [more]
CPSF5_PONAB9.3e-4360.45Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUD... [more]
Match NameE-valueIdentityDescription
A0A0A0L8Y2_CUCSA3.1e-77100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1[more]
A0A061G0V3_THECC3.7e-7596.43Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN... [more]
V4U7E9_9ROSI3.7e-7596.43Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1[more]
A0A067F1N4_CITSI3.7e-7596.43Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039176mg PE=4 S... [more]
A0A0D2PAK4_GOSRA1.9e-7495.71Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G25550.12.9e-7187.14 Cleavage/polyadenylation specificity factor, 25kDa subunit[more]
AT4G29820.15.8e-4357.78 homolog of CFIM-25[more]
Match NameE-valueIdentityDescription
gi|449432171|ref|XP_004133873.1|4.4e-77100.00PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus][more]
gi|641841106|gb|KDO60020.1|5.4e-7596.43hypothetical protein CISIN_1g039176mg, partial [Citrus sinensis][more]
gi|567858442|ref|XP_006421904.1|5.4e-7596.43hypothetical protein CICLE_v10005929mg [Citrus clementina][more]
gi|1009122478|ref|XP_015878023.1|5.4e-7596.43PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ziziphus jujuba][more]
gi|590672648|ref|XP_007038670.1|5.4e-7596.43Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase-like_dom_sf
IPR016706Cleav_polyA_spec_factor_su5
IPR000086NUDIX_hydrolase_dom
IPR015797NUDIX_hydrolase-like_dom_sf
IPR016706Cleav_polyA_spec_factor_su5
IPR000086NUDIX_hydrolase_dom
IPR015797NUDIX_hydrolase-like_dom_sf
IPR016706Cleav_polyA_spec_factor_su5
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003729mRNA binding
GO:0016787hydrolase activity
GO:0003729mRNA binding
GO:0016787hydrolase activity
GO:0003729mRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005849mRNA cleavage factor complex
GO:0005849mRNA cleavage factor complex
GO:0005849mRNA cleavage factor complex
Vocabulary: Biological Process
TermDefinition
GO:0006378mRNA polyadenylation
GO:0006378mRNA polyadenylation
GO:0006378mRNA polyadenylation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006378 mRNA polyadenylation
cellular_component GO:0005849 mRNA cleavage factor complex
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003729 mRNA binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45786melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006125T3MELO3C006125T3mRNA
MELO3C006125T2MELO3C006125T2mRNA
MELO3C006125T1MELO3C006125T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45786MU45786transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000086NUDIX hydrolase domainPROFILEPS51462NUDIXcoord: 46..171
score: 8
IPR015797NUDIX hydrolase domain-likeGENE3DG3DSA:3.90.79.10coord: 43..104
score: 5.
IPR015797NUDIX hydrolase domain-likeunknownSSF55811Nudixcoord: 49..152
score: 3.7
IPR016706Cleavage/polyadenylation specificity factor subunit 5PIRPIRSF017888CPSF-25coord: 1..200
score: 1.3
IPR016706Cleavage/polyadenylation specificity factor subunit 5PANTHERPTHR13047PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNITcoord: 1..200
score: 1.2E
IPR016706Cleavage/polyadenylation specificity factor subunit 5PFAMPF13869NUDIX_2coord: 6..193
score: 2.2