Lsi05G020260 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G020260
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCleavage and polyadenylation specificity factor subunit 5
Locationchr05 : 27252707 .. 27261330 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGAAATCTCACTCGTTAACCTGCAAAGCTCGCAAGGACTGATCGCAGGTCATCATCACCAAGGTTTTTCTACTTCCTCCCGGCTTTGCTCGGCAGCTGCAGAGTGAACACAGCCATGGTGACGTCGCCGGTGGTGAACACTTATCCACTTTCCAGCTACACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCTGATCGTCTTGCTCGGATGAAAGTCAAGTACTGCAAATTTTCTCGATTCCTTAAACCCTAATTTTTGTTGTTTTTCAACGTCTTAGGGTTGTATCGTTCTTGAAAGCTAGGAACTCTGACCGCTTCGTATGGTGGATTCCTGGTCATTTTACATTTGATGTGTATATCACTACACTGAATCGTGGTAAATGCTGTATGTTTATGATTATCCTCGGCCATTTGTTGCAAGATTTGATCATACAGGGTTTTATGAAAATTACATGACGTAGAGTATGGAGCCGAGTATATAATGTGTTTCTTTCTTTTATTTATTTTTTTTTTTTTAAAAAAGAGTAAGCTTGGTATGGAGGGCCTTTTTTTCTTTGGGGGGGGGGGACAGAGTTCTGGATGAAAGTGTATTATTTATTTTATTCAAGCTATTTGTTCATAGGTAAACTTAATGTTTTCTTATCGTTATTTTGTTTCCTCTTTATTCCCGGCCTAAAAATTTGATCTTCCATTTACTGGCTTTGGAGGGACATTCAGTGGAATGAGTAACATGTACTGGTGTTTGGTTCACAGCTATATGAAGGAAGGCATGAGGACAAGTGTTGAAGCAATTCTGCTGGTTAGTGTACCTTCTTCATATTTAATCTTAATGTGCTCATGGCCTTGCTTTGTTATAAATATTAAAAAAAAATAGCGTTTAAATAGTTGGATGTCATGGTTTGCGTCTTCATTTGTGAACAGTGAATCATTGGAAACGTTTTTGCAACAAATTATTGTATTAAAAAGAAAAAAAATATACTGTCTTACTTATCTACATCCTTCATCTAAATTATTGACATATGTGTAGGGAATTAAAAGGGAAAATTGTGTTGTTGAATCCTTTATTCTCCTATCCGTTCTTTACTTGAGTGGTACACATTCAATCGAAAGATAGGGATCGCTAAATCTGGACCTTCATCATCATCATCTTTTAGATTATACCAAAAGTAAACATCCAATGAAATCTCTGTATGCTTTAACATGGGATCTCCCTTCCTGTGATTGCTTCCAACTGGAAAATTTTGCTGTATCCTTGGAAGCCTGTGTACACTTTGATACTCAATGCATACATTGTATTTTTTATATGTATGTATGTATGTATGTATCTATTTATGTATATTGTTTTTTTATAATTCTGATTACATTATATTTCAAATATATTAACTAATCTACTTTTGGTTGCCGGGCTAAAGTAGGTATTTTAATACCTTTGCAACTGACATTTATGTGTCTGGTAAAATAACTCCAAGATATCCAAAATCTTTAGGGTGTGTTTGGCCCAAGGAGTTAGGAAGTAAGAGTTTGTGAACTCCACTCCTTGTTTGGCTCAAGGAGTTGATGGGTCCCACTACTAAAAAACATCAATTTTATAACTTATCAACTCCTTACACCGTGGGATCCAGGAGTTCACAACTTCCTAGACTTCATAACTCCTTACTCTTCACTATTCCACTCCGTACCCCAAACACCCTCTTATTAGGATTTAAGTCAACCACAAGTTGGATTTAAAATATAGAATGTGACCCAAAAATTAATGAGGAATTAAGTACTAAGATGGATGGTTGGAGATGCCTCATTCTCTTAAAGCTAGTAGGGTGAACCTTGCCCAACCCAATCTCTCCTTAGTAGCTTGCCTTTATATCATTTTTCTCTCCTAAGAGGTCCGAATAACGTTATGACTTATATGGGAAAATTTATCTGACTTTGTGTGGAATGGTGGTGTTTTCAAGCATGATAGTAACTTAGTCATATGGGATTAGACAACCTCGACAATTGCCTTGGGGTTTCGGGGTGGGCTCCCTTGAACATCAAAATACATCTCTTCTCACCAAATGGATTTGGAGCTTTACTCAAGAGAAGAGTTCTTTGTGGCACAATGTTATTTCTAGCATTTATGGTGTCATGCCTCCGGGTTGGAAGATAGACGACTTCAAAAAAGTAAAAAAAAACAAACAAGCCTTGAGTTGACATTGCTAGGAGTTACCCCTTCTTTGCTTGTCTTGCCAAATGCAAGGTAGGTTGTGGCAGGAACATTCACTTTTGGCATGATATTTGGGTCGACCAAGCTCCTTTGAAAGACTACTTTCCTGCATGTATGTTGTATCTTTTAAAAAGGAGGTCACTATCTTTGATTTCTGGGACAACAATAACTAGGTGGGAGAGGGTTTGGATCAAATTCTTTGATCCCTTAAAGGCTCTTATATGTACTCTATTTAATTTGACCTTTCAAAACCTTGCTACTAAGCGTACTAAGGCTAATGCGGCTCTAACAAGTAGAATTTGGTGACTACTATCTTTGTATCTATATTTGGAGATGATGAGAGTGCTAAAGGGGTGTCAACATAGTTGAGATGTCTGGGTGCACTCACTGATCCATAGTTTTTATTTACTCTTTTGCTTTTGTATCATTATTGTAATTTTGAGCATTAGTCTCATTTCATTATATCAATGAAGAGACTTGTTTCCTTTTTAAAAAAAACAAGTAGAATTTGGAAGCATTAATGCCTGAAAAAGATGAAAGTCTTCCTTTTGTCCTTGGTTTTTAGAAGTCTAAATATTAATGACAGACTTCAAAGAAAATTTAGAAGGTGGTCTCTTTCGCCTTCGAGTTGTAGGATTTGATTGCATATGGAGGATACCCTTGATCACCACTTCCTCCATTGTGACTTTTTTGCGAGATTGTGGAGTTACTCAGTTGGGAATTTTAGGCTTGTCTTTTTGTCTCCCTAAGAAAGTGGATGATTCACTTATGAAAGGTATTATTCACACATGGAACTTGAAAGGAAAAGCCAAGATTGTCAAAAGTTGCGCTTGCGCCTTGAACTCTTTTGTGGCATATTTGGAAGGAAAGAAACCTTCACTCCTTCTTCGCCCGGGGGGGGGGGGGTGGGTAATATTATAATACGACATCTTGGTGGATTCATTACTTATGAGATTCTTTTGTAGCTACCGTCTGTTGATGATTGTTAGCGATTGGAAGACTCTTAGGTGTAGTTCTCTGTTTCGTTCTTTCTTTTCTTTTAAGGGGTACTCTCTACCCCAGACCCTTAGGCTGTGCTTGTTCTCTTTTGAAATATTTTCCTTTGTTTTCTATCATGCAAGATGTAAAACAAGCTCATTGAAGTTGACGCTTTAGGAATCGTCTACCATGCATTAGCAATATATTTATGACATTTAAAGTTCAAATGTAGTTGGGAGAACCAATAGGATTTCAGTTCGTTGTATCATGCTTCCCAACCTAGACATGGTCTAATTGCCATTGTACTAGTAAGGTGGTGCCATGACAATAGTTGGATACATCCTTTGTTAAGTTGGCCAGCTCGAGAACTAAAGAGGATCTCTGCTCTTTATTCTATAGGAGTTATTTTGCATGGTTGGAGTCTCTTCTTGTAGGAGGAGGTGCCTTTTTGTGGGCTCAGTTTTTTTGCATGCCCGCTTATTATTTCATTTTTTTCTCAATGAAAGTTGTCGTTAAAAAAAAAAAGAGGTTTTATTGGTGATGAGAAGTATGGAAAAGGTAAACCATGAGGTTGTGATGGACGCATTGTCGTTTTTTCAAAGAAGTCATGGAACATAGTTGAAGAGAAGTTGTGAAGATATTGCATTTCATTTTTCAATAATGGCATTCTCCAGACTCTAAGAAGACCGAGCTGACAAGAGGTTGGGGATTTGGATTCATTTGCTTAACTGCCTTTATTTATAAGCTTTTAGATTGAATATTTGTTGAAACTTGATTCAAAGCAAATGCTGCCAAAGGCTATCGCTCGAATCAGTGAACAGGAAGGGACAAACGTTGGATGCTGTTTAGTAGCAATGTAGTGGTGGACAAAGGGAAAAAAGAAAAGAAAGGCTAGGTTTTTAAGGTGGATCTCAAGAATGCATACAATATGTTGACGGGCACTTTCTTACATCAGAACTTCATAACAGAGGTTTTGGGTGAATTGGATCTAGAGCTACATCTATAGCGCTATATTTTCTATTTTTGTCCATAGCTGACCTAAGGGAAAAGATTCAGCCTCCAAGGGTTATTTGAGGAGATCCCTCATCTCATTTTTGTTTGTAATCAATGAGAGTTGTGCTAATTGGAATGCTGGATACGGTTACAGCCTACAGCCAGGTTTTTTAGGAGTTAACATGGTCAGAAACGCTATCAAGATTAATCAATTGTAATATGTTGATGATACTTCTATTTTATGTGCCTACTATAAGGCTGACGTTGAAGAATCTGAGTAAGGTACTGTAGCAGTTAAAGCAAGCATTAATGTGGATCATGTGCTGCTATCTCAGTCGTGCTTCAGGCCCTTGTTGGCAAGGATGGAGAATCACTAGGACTTTGATTCCTTGTGAGCTAGAAATATGGGCTCAATCAGGGAGGTGAAATACAACCAGGAGAGATAATAATGCTGCTGGATGTCCTTAGACGTATATCTCCTAGTTCATTTAGGGAAGTAATAATTACCTTGGCTTAAAATTGGAAGGAAATCCAATGAAATCTTGGAAAAATTTTAGCCGCAAAGAGAATGCCCATTTGCCTACCTCTTCCCTAGACTTTATCTTCCAAAAATTTGGGGAAAAAGATCAATGACCAATAATTGTTGAAATGCGAGGGTCTCTAGAAGCTTGATTTTTAGAGAAATCTGTTGGATGCTAAAATACAGGGGCAGCCCAACCTTTCAAATTTTGGTAAGAAAAAAGAACATGTTGATGAATCAAAAGGAATCCAAACACAGGAGGATAAGCAATCCAATCCCAAAGCTAAAGAGGTTTGTAGAATAGAACCTCAATTATACGAGGCACACTATGATTACAGCAAACAATGTTCTTAGGGTACACCTAAGAGAAGTGGCAGATCTACCATGGGCTCGGGGGGCTCACGTTCCCCTCAACTATGAAAATATTAATATTAGTATATAAAAATTGCTCAAAAAACCAACTTCTTTTGTTAGCTCCAGTGGCAAAATGCATAATAGATCCCTCCTCACAAGTCACAACTAGGGTTTGATTCTTTTCCAACTTAAATTTGAAGATTTTAGATTGTACTTCTTATCGGGAAACGATGGGATATGGGATTGGAGCCATGTGGATGGAGTTGTGTGGTAGGAGAAGAGCAATGCAGTTGGATACTTATGTGTGCTTAGTATATATATATATTTAAAAAAGATCATAATTATGTTATTCATTTAAAATATATACATAACTCTTTTCTTAAAAAAGAAATAAAAAATAAAAAATTTAAATTTTAGGCGACTCAACAAAAATCCTAGATCCGCCACTTCCCAAGAGGAGGCTGATTGAAATGCAGGATCCCATGCCTCTTCGTTTGCCTTAGAATTGTTTTTGAAGATTCTATAGTTTCTCTCAGCTTATAATTTCCAAACGGCAGCTTTGATAGAATTAGACCAAAGAATTCTAGTTTTCTGCCTGTTGAGTTGGGCACTGAATGTTTCTTAAAAGTCACTAAGCAGAAAGCACCCTCCTTAGTGCAATTTAGACTGATATTCAAGAGAGTCATGTATTATACCGTGGCATCACTTTATCTTTTCATTTTCCTTTTTCCTTTTAATTCCACAGGTGCAAGAACATAAACATCCCCATATTCTACTTTTGCAAATAGGCAATACCTTTTGCAAGCTTCCTGGGGGACGGTTGAAGCCAGGAGAAAATGGTAAGATTTTATAAACGATTGAAGCCACCCATATCCCATTGAGTAAAATCTCTCTCTCATGTTTATTTTCATCTGCAGAAATAGAAGGTTTAAAGAGGAAGCTCACGAGCAAACTGGGTGCAAATTCACCCTCTCTCCAGCCTGATTGGCAGGTTCAAATCATTTCTTCTATTTTTGTGTGCAAATCTATTTACTGAAGTTATATATGTTCCTACGAGGAATTAGCCTCTTCATTGCAAATTTCCTGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGGCCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGTATGTGTGGATCTCTCTCTCTTTGTCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCACACACACACACACACTTTTTTTGGTGGTGACTTTTATCAAAGTTTAAAGTCTTGATGTCGATGTAAATGTCTAGGTCTCATTTTATAGAAATGTCGATTGAAATATCAATAAAATGTCGGTGGATATTTTTGAAAAAAATTATAATAAAAAATTATTTAAAAAATCATTTAAATTAATAAATAAACATTTTACCCATTGCAAATAGGTTAAAAGGCTTATTTTTTATATTATATACACATCGACATTTTGCTGCTTCTTTGGTATATTCCATCAATCTTTTAACGATGCAATGGAAATGTTGGTTCACCCCATATGTATTGAACTGACAAACGTGTGTATGGAAATCTAATACCCTGACTTATAGAGAGAGCAGAAATCCTTTTCAGAAAAAGGCTTTTAATTGGATTTTACTTTGTTGCTTTTTTCGACCTTCGTTGTGTGAGAATTGTAGAAAATTCCCATCATTCATTATTCAAGCTGATCTTTTGGCCTCTTTATTCTCCCGTTCTTTCCTTCTTACTTCGATTAGGAATATGAAGAGAGCACAAATGCTTTTCAGAAAAAGGCTTTTTATCTTTTCTTTATACTTGACTTATACTGAAAACTTTTTTTCATCTTCATATGTAAAAAGAGAAAATCTTAATCAAGGTTTTGGATGATCCAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTATGACAATGTGCAGGTATGTTGCATTTTTTCTTCGTATAAGCGAATTTCGAGCATATTAAGAATTTCATCATGTTGGGCAATGTCGAAAACCTGCTGAATTATAAGCAATTAGTATGTCGTCTAGTGGATATCAAGGGAAAGAATAAAGATATATTGTAGATTGATTTTCTGGATGCTGGATGATACTGATAGTACATGTAAATCCCATTAGCCTCAAATTATCATGCTATTTATAAGCTAAATATTAGTTTTCGGTTTTTGCACTTGATCACAGAGATATGGGCCAGTTATATCGACGATTCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGGTTACAAAACAAAAACCCTTAAATTTGTAGCATGCATGGACTCCAATTTGTTTGAGATAGTTAGAATTTAGAGGACATTATCAACTTTGCTTGAGATAGATTAGCATACTTGATAGACTTTCTTGTTCTCGCCGATGTGTTTGCGAGGCAAAACCCGAGGAAAAAAAATTATGTTGCTTCAAACAATAGCGGAAAAATGAGTTTGTGTATCAATTTAACTCGATGAAAGTTTTAAAAGTGTAATGTATGTCTATTGAATGAATTATTATAGCGGTTAAATTGTGGAAACTTAGACATTTTGGGTTCCAAGTTCCAAGACAGAATGATAGTCTTGGCTCTTTGCTTCTCTAGTTTAATGCTATTTGAGTCATTTTTTGGGGAGATAATATTGCTTTCTGTTCCTCTCTTTAGAGTTCTTCATCCAAATAGGTTTGTAAATATACAGCTTTTGAAGGATTCTTATTTATTAAAATATCATTTTAGTC

mRNA sequence

ACGAAATCTCACTCGTTAACCTGCAAAGCTCGCAAGGACTGATCGCAGGTCATCATCACCAAGGTTTTTCTACTTCCTCCCGGCTTTGCTCGGCAGCTGCAGAGTGAACACAGCCATGGTGACGTCGCCGGTGGTGAACACTTATCCACTTTCCAGCTACACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCTGATCGTCTTGCTCGGATGAAAGTCAACTATATGAAGGAAGGCATGAGGACAAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAACATCCCCATATTCTACTTTTGCAAATAGGCAATACCTTTTGCAAGCTTCCTGGGGGACGGTTGAAGCCAGGAGAAAATGAAATAGAAGGTTTAAAGAGGAAGCTCACGAGCAAACTGGGTGCAAATTCACCCTCTCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGGCCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTATGACAATGTGCAGAGATATGGGCCAGTTATATCGACGATTCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGGTTACAAAACAAAAACCCTTAAATTTGTAGCATGCATGGACTCCAATTTGTTTGAGATAGTTAGAATTTAGAGGACATTATCAACTTTGCTTGAGATAGATTAGCATACTTGATAGACTTTCTTGTTCTCGCCGATGTGTTTGCGAGGCAAAACCCGAGGAAAAAAAATTATGTTGCTTCAAACAATAGCGGAAAAATGAGTTTGTGTATCAATTTAACTCGATGAAAGTTTTAAAAGTGTAATGTATGTCTATTGAATGAATTATTATAGCGGTTAAATTGTGGAAACTTAGACATTTTGGGTTCCAAGTTCCAAGACAGAATGATAGTCTTGGCTCTTTGCTTCTCTAGTTTAATGCTATTTGAGTCATTTTTTGGGGAGATAATATTGCTTTCTGTTCCTCTCTTTAGAGTTCTTCATCCAAATAGGTTTGTAAATATACAGCTTTTGAAGGATTCTTATTTATTAAAATATCATTTTAGTC

Coding sequence (CDS)

ATGGTGACGTCGCCGGTGGTGAACACTTATCCACTTTCCAGCTACACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCTGATCGTCTTGCTCGGATGAAAGTCAACTATATGAAGGAAGGCATGAGGACAAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAACATCCCCATATTCTACTTTTGCAAATAGGCAATACCTTTTGCAAGCTTCCTGGGGGACGGTTGAAGCCAGGAGAAAATGAAATAGAAGGTTTAAAGAGGAAGCTCACGAGCAAACTGGGTGCAAATTCACCCTCTCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGGCCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTATGACAATGTGCAGAGATATGGGCCAGTTATATCGACGATTCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA

Protein sequence

MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Homology
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BLAST of Lsi05G020260 vs. Swiss-Prot
Match: CFIS2_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.2e-103
Identity = 176/200 (88.00%), Postives = 188/200 (94.00%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS +L PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

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BLAST of Lsi05G020260 vs. Swiss-Prot
Match: CPSF5_XENLA (Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-65
Identity = 117/189 (61.90%), Postives = 141/189 (74.60%), Query Frame = 1 

Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     +Q DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVQQDWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

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BLAST of Lsi05G020260 vs. Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-65
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1 

Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

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BLAST of Lsi05G020260 vs. Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-65
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1 

Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

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BLAST of Lsi05G020260 vs. Swiss-Prot
Match: CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-65
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1 

Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

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BLAST of Lsi05G020260 vs. TrEMBL
Match: A0A0A0L8Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 2.0e-113
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of Lsi05G020260 vs. TrEMBL
Match: A0A061G0V3_THECC (Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN=TCM_015155 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 9.2e-111
Identity = 193/200 (96.50%), Postives = 198/200 (99.00%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of Lsi05G020260 vs. TrEMBL
Match: V4U7E9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 1.6e-110
Identity = 193/199 (96.98%), Postives = 197/199 (98.99%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMIT 200
           PVISTIPQQLSRFQFNMIT
Sbjct: 181 PVISTIPQQLSRFQFNMIT 199

[Close]
BLAST of Lsi05G020260 vs. TrEMBL
Match: A0A0D2MX37_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 4.6e-110
Identity = 192/200 (96.00%), Postives = 197/200 (98.50%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MV SPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVMSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of Lsi05G020260 vs. TrEMBL
Match: B9R9C7_RICCO (Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_1496400 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 1.3e-109
Identity = 192/200 (96.00%), Postives = 196/200 (98.00%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MV S VVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVNSSVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of Lsi05G020260 vs. TAIR10
Match: AT4G25550.1 (AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit)

HSP 1 Score: 377.1 bits (967), Expect = 6.8e-105
Identity = 176/200 (88.00%), Postives = 188/200 (94.00%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS +L PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

[Close]
BLAST of Lsi05G020260 vs. TAIR10
Match: AT4G29820.1 (AT4G29820.1 homolog of CFIM-25)

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-64
Identity = 111/193 (57.51%), Postives = 145/193 (75.13%), Query Frame = 1 

Query: 6   VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHIL 65
           +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LLV+  KHPH+L
Sbjct: 28  MVDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVL 87

Query: 66  LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFE 125
           LLQ  N+  KLPGGRL+PGE++IEGLKRKL SKL  N       +++GEC+ +WWRPNFE
Sbjct: 88  LLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFE 147

Query: 126 TVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVIST 185
           T+MYP+ PP+I  PKEC KLF+V L   + F VPKN KLLAVPL +L++N + YGP++S 
Sbjct: 148 TLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQ 207

Query: 186 IPQQLSRFQFNMI 199
           IP+ LS+F FNM+
Sbjct: 208 IPKLLSKFSFNMM 220

[Close]
BLAST of Lsi05G020260 vs. NCBI nr
Match: gi|449432171|ref|XP_004133873.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus])

HSP 1 Score: 416.4 bits (1069), Expect = 2.8e-113
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of Lsi05G020260 vs. NCBI nr
Match: gi|590672648|ref|XP_007038670.1| (Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao])

HSP 1 Score: 407.5 bits (1046), Expect = 1.3e-110
Identity = 193/200 (96.50%), Postives = 198/200 (99.00%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of Lsi05G020260 vs. NCBI nr
Match: gi|567858442|ref|XP_006421904.1| (hypothetical protein CICLE_v10005929mg [Citrus clementina])

HSP 1 Score: 406.8 bits (1044), Expect = 2.3e-110
Identity = 193/199 (96.98%), Postives = 197/199 (98.99%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMIT 200
           PVISTIPQQLSRFQFNMIT
Sbjct: 181 PVISTIPQQLSRFQFNMIT 199

[Close]
BLAST of Lsi05G020260 vs. NCBI nr
Match: gi|1009122478|ref|XP_015878023.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ziziphus jujuba])

HSP 1 Score: 406.8 bits (1044), Expect = 2.3e-110
Identity = 193/200 (96.50%), Postives = 197/200 (98.50%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMI T
Sbjct: 181 PVISTIPQQLSRFQFNMIAT 200

[Close]
BLAST of Lsi05G020260 vs. NCBI nr
Match: gi|823149430|ref|XP_012474578.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Gossypium raimondii])

HSP 1 Score: 405.2 bits (1040), Expect = 6.6e-110
Identity = 192/200 (96.00%), Postives = 197/200 (98.50%), Query Frame = 1 

Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MV SPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVMSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

The following BLAST results are available for this feature:
BLAST of Lsi05G020260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CFIS2_ARATH1.2e-10388.00Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE... [more]
CPSF5_XENLA1.3e-6561.90Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=c... [more]
CPSF5_BOVIN1.3e-6562.43Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT2... [more]
CPSF5_HUMAN1.3e-6562.43Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUD... [more]
CPSF5_MOUSE1.3e-6562.43Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nud... [more]
BLAST of Lsi05G020260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8Y2_CUCSA2.0e-113100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1[more]
A0A061G0V3_THECC9.2e-11196.50Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN... [more]
V4U7E9_9ROSI1.6e-11096.98Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1[more]
A0A0D2MX37_GOSRA4.6e-11096.00Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1[more]
B9R9C7_RICCO1.3e-10996.00Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_... [more]
BLAST of Lsi05G020260 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G25550.16.8e-10588.00 Cleavage/polyadenylation specificity factor, 25kDa subunit[more]
AT4G29820.12.6e-6457.51 homolog of CFIM-25[more]
BLAST of Lsi05G020260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432171|ref|XP_004133873.1|2.8e-113100.00PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus][more]
gi|590672648|ref|XP_007038670.1|1.3e-11096.50Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao][more]
gi|567858442|ref|XP_006421904.1|2.3e-11096.98hypothetical protein CICLE_v10005929mg [Citrus clementina][more]
gi|1009122478|ref|XP_015878023.1|2.3e-11096.50PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ziziphus jujuba][more]
gi|823149430|ref|XP_012474578.1|6.6e-11096.00PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006378mRNA polyadenylation
Vocabulary: Cellular Component
TermDefinition
GO:0005849mRNA cleavage factor complex
Vocabulary: Molecular Function
TermDefinition
GO:0003729mRNA binding
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR016706Cleav_polyA_spec_factor_su5
IPR015797NUDIX_hydrolase-like_dom_sf
IPR000086NUDIX_hydrolase_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006378 mRNA polyadenylation
cellular_component GO:0005849 mRNA cleavage factor complex
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003729 mRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G020260.1Lsi05G020260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000086NUDIX hydrolase domainPROFILEPS51462NUDIXcoord: 46..171
score: 8
IPR015797NUDIX hydrolase domain-likeGENE3DG3DSA:3.90.79.10coord: 43..104
score: 5.
IPR015797NUDIX hydrolase domain-likeunknownSSF55811Nudixcoord: 49..152
score: 3.7
IPR016706Cleavage/polyadenylation specificity factor subunit 5PIRPIRSF017888CPSF-25coord: 1..200
score: 1.3
IPR016706Cleavage/polyadenylation specificity factor subunit 5PANTHERPTHR13047PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNITcoord: 1..200
score: 1.2E
IPR016706Cleavage/polyadenylation specificity factor subunit 5PFAMPF13869NUDIX_2coord: 6..193
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G020260Csa3G122550Cucumber (Chinese Long) v2culsiB209
Lsi05G020260CSPI03G08920Wild cucumber (PI 183967)cpilsiB207
Lsi05G020260Cucsa.258240Cucumber (Gy14) v1cgylsiB415
Lsi05G020260CmaCh14G020240Cucurbita maxima (Rimu)cmalsiB245
Lsi05G020260CmaCh06G010910Cucurbita maxima (Rimu)cmalsiB764
Lsi05G020260CmoCh06G011170Cucurbita moschata (Rifu)cmolsiB757
Lsi05G020260CmoCh14G020850Cucurbita moschata (Rifu)cmolsiB233
Lsi05G020260Cla021247Watermelon (97103) v1lsiwmB365
Lsi05G020260MELO3C006125Melon (DHL92) v3.5.1lsimeB378
Lsi05G020260ClCG05G001670Watermelon (Charleston Gray)lsiwcgB335
Lsi05G020260MELO3C006125.2Melon (DHL92) v3.6.1lsimedB396
Lsi05G020260Cla97C05G082070Watermelon (97103) v2lsiwmbB333
Lsi05G020260Bhi01G000268Wax gourdlsiwgoB448
Lsi05G020260Cp4.1LG08g01490Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G020260Cp4.1LG03g16820Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G020260CsGy3G009010Cucumber (Gy14) v2cgyblsiB196
Lsi05G020260Carg21013Silver-seed gourdcarlsiB445
Lsi05G020260Carg24942Silver-seed gourdcarlsiB592
Lsi05G020260CsaV3_3G009050Cucumber (Chinese Long) v3cuclsiB228
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G020260Cucumber (Chinese Long) v3cuclsiB227
Lsi05G020260Bottle gourd (USVL1VR-Ls)lsilsiB160
Lsi05G020260Cucurbita maxima (Rimu)cmalsiB320
Lsi05G020260Cucurbita maxima (Rimu)cmalsiB386
Lsi05G020260Cucurbita maxima (Rimu)cmalsiB583
Lsi05G020260Cucurbita moschata (Rifu)cmolsiB308
Lsi05G020260Cucurbita moschata (Rifu)cmolsiB371
Lsi05G020260Cucurbita moschata (Rifu)cmolsiB557
Lsi05G020260Cucurbita pepo (Zucchini)cpelsiB039
Lsi05G020260Wild cucumber (PI 183967)cpilsiB205
Lsi05G020260Cucumber (Chinese Long) v2culsiB207
Lsi05G020260Melon (DHL92) v3.5.1lsimeB375
Lsi05G020260Watermelon (Charleston Gray)lsiwcgB334
Lsi05G020260Watermelon (97103) v1lsiwmB364