CmaCh06G010910 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G010910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cleavage and polyadenylation specificity factor subunit 5
Location	Cma_Chr06 : 7366043 .. 7370638 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGATCGCAGGTCGCCAAGGTTTTTCTACTGCCTCCCGGCAGCTGCTCAGTGTACGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAAGTACTGCAAATTTACTCCATTTCTTAAACCCTAACTTTATGGTTTTTTCAACGTTTTAGAGTTGTATTTTCTCGAAAGTTAGGAACTATGGCCGTTTCTTAGTGTGGATTCCTGGTCATTTTACATTTTATGTGTTTAGCTTTACTAGAAACCATTTAATGTGTTTCTAATTTCAAGAAATGCGCGAGCTTGGACTAAAGTTCTGGATGAAATTGTGTTATTGATTTTATTCAAGCCATTTGTTCGTTGATAAACTCAGTGCTTTCTTATTGCTATTTGTTTCGTTGTTTCGTCATCGCCTGGAAATTTTGTCTTCCATTTATTGGTTTTGGAGGGGCTTTGACGGGAATGAGTAACTTGTCCTGGTTCTTGGTTCACAGCTATATGAAGGAGGGCATGAGGACGAGTGTTGAAGCAATTCTTCTGGTCAGTGCGCATCTTCATCATTTTTCATCTCAATGTACTCATTTCCTTATTATTATTATCTTTCTAAAAAATTTGAAGTTTAAAGAGATCATCAAGATATAGGTGTACTAGTTGGATACCATGGTTTGTGTTTTTCAGTTGATATTGAAATTCATTGAACTGTGAATCACTGAAATGTTTTATAACGAATTATAATATTTAAAAGGTACAAAAATATTTATCGTCTTGCATATCTACATCCTTCATCTAGAATATTTGAGTATATGTAGGCTATTAGAAGGAAAGTTTCATTGCCGAATCCTTTATTGTCCTATCTGATCTTTACCCGAGCAGCACGCGTTGGAAGACAAGATGACTAAATTTGAACTTCCATCATGTCATCTTTTAGATTATACCCGCCTATGGTTTCCTCCAGCTAGTAAATTTAACATGAGGTCTCCCCACCTATGACTGCTTCCAACTGTAAATTTTTCCCGTAATCCTTCGAAGCCCATGTACATTTTGATGCTCAACAAACATGTTGTTTCTTATATGTATGTACTGAATACATTTAATGTGTAATATATTAATTAATCTGTTTTTGGTTGCATAGCTGAAGTAGATATTTTAGTACCTCTGTAACTGACATTTATGTATTTTGCAAAAAAGCTCCAAAATATTCAAAATATTTTAGGATTTAAGCCAAGGAAAGTTGGATTTGAAATACAGAATGTGCCCAAAATGTAAAAACAGGTTCACTGAAGTTGATGCTTTAGGAATTTCCTACCAGACAATAACAATTTATTTACGATATTTGTGGATGAGATGAAAGTTCAACTGCATGTACTTGGGAGAGCCAGTAGGATTTCGATTTATCGCATTGTGCTTCCCAACCTACCTATAGTCTAAGTAGCATTCTACTAGTAAGATGGTGACTATAACTGATTTCATTTTGTTAAGATGGCCAGCTCGAGGACCAACGAGGATCTTGGCTCTTTATTCTAGAGGTGAAGGAATCGACTTTCTCCTTAATGGTCTTGATTAAGGTCCCATTTAGGAAATTAGGGAGGCAATAATACTGCAACCAGGAGAGGTAATAATACTGCTGGAAGTCTCAGACGTATATCTCCAAGTTCATTTAGGAAATTAATAATTACTGTGCTGAAAATAGGAAGGGAATCCTATAAAGTCTTGGAAGATCTTTAGCCACAAAAAGGAGGATGGTTACTTGCTTCCACGAATTTGGGTAAAAAAGATCAACATATTTGTTGAAATGCGAGGGTTTCTAGAAGCTTGATTTTTAGAGAAACCTGTTGGATGTTGAAATACAGGGGCAGCCTAATGTTTCAAATTTTGATAAGAAAAAGAGCATGAAACCAACGGGAGACCAAAAACAGGTGGATAAGCAGTCCAACCCCGAAGCTAAAGGGGTTTACAGAATAGGACCTCAATTATACAAGGCATACTATAATTACAAAAAGCAACGTGCGAATTGAAACAAATACTTTATTGAGTTCTTTTTACGTTGCTTTTTGTTTTACTCCTTTATGGAGTTTGATCATTTGAGCAATAGTATATTTTCATTACATCAATGAAACGTTTTGTTTCTTGTTCAAAAAATTACAAAAACATTGTTTTTTGGGCACACAAAGAGGAAGCTGATTGGAATGCAGGATCCTTGCACCCCTTAGATTTGTTTCTGAAGATTCTATAGTTTTTCTCGGCTTATGATTCAAACAACAGCTTTGATAGAATTAAACAAGGGAGTTCTAGTTTTCTGCCATTTTAAGTTTGGCACTGAATGTTTCCTTAATTCATTAACTTTCTCTTTAGTTGGTGTATTTTAGTGACTAATATTTAAGAGAACCATGTACTTTACTGTGATGGAATTTTATATTTTTCGTTTTTTCTTTTTACTTCCACAGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGGTAAGATTTTATATACATTTGAAGCCCCCCTGCATCCCATTGAGTAAAAAATCTCTCTCTCATGTTTTATCTTAATATCCACAGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCAAATTCACCAGCCCTCCAGCCTGATTGGCAGGTTTGGGTCATCTCTTGCTGTGTGCAAATCTATTCGCAGAAGTTATATTTGTTTCTACCCAAAGTTATATTATTCATTGCACATTTTCTGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCCAAGGTATGATCTCTCTCTCTCATGTTCCCCAGCCCCCAGCAGTGCTGATAGCACTTTTTTGGTGGTGACTTTGATAGGGAAGAATGTAGGCTATCAGTTATCTATCTATATGCATGTATGTATGTGCCTGTGTATACTATGCAGATTATTTATTACTCAAGCTGATTGGATAGCCTCTTTACCCTAGGGAAGGCCCTTGTAACAGCCCAAGCCCACCGTTAGCAAATATTGTCCTCTTTGGGTTTTTTCTTTCGAGTTTTTATAACGTGTCTGCTAGGGAGAGGTTTCTACACTCTTATAAAGAATGTTTTGTTCCCCTCTCCAACTAATGTGGGATCTCACAATCCACCCCCCCTTCGAGGCCCAGTGTCCTCGCTGGCACTCGTTCCTCTCTCCATTAAATGTGCGATTTCACAATTCACCCCCTTCGAGGCTCACACAAACGTTCATCTCTCAAATTGATGTGGGATCTCACAATCCACCCCCTTCAGGGTCTAGCGTCCTCGCTGACACACAGCCCGATGTCCACCCCCCTTCGCGGCTCAGCGTCCTTGCTAGCATACCGCCCAGTGTTTGGCTTTAATACCATTTATAACAGCTCAAGCCCACCACTAACAAATTTATAACGAGTCTCCTATGGAGAGGTTTCCACACTCTTATAAAGAATGTTTCATTCCTCTTTCCAACCAATATGGGATCTCACAATGGTCCACTGTTTTCTTACTTTGATTGGCATTATAAAGAGAGTTGAAATTATTTTTAGGAAGCTTATTTTTCCCCAAAAAAAAATCCTAATTAGGGTTTTTGATGATCCAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGGTAAGTTGCATTTTTCTTTGTAGATCCTCATAAGTAGGAAAAAAAAAGTTTATTGTCATGCATATTCTTAAGCGATTTTTGGCATGTCGGGCAATATCGAAAACCTGCTTAATTATAAGCAATTAGTATGTGGTGGTGGTGGTTATCTAGGGATAGATGAATTAAGATAGATTTTCTGGATGCTGGATGATACTGATAGAGTACATGTAAATCCATTTGTCTCAAAATACCATGCATTTTATTAGCTAAACACTAGTTTTCGGATATCGCACTTGATCACAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGCTTGCAAGACAAGAACTTAAAATTTGTGGCATGAACAGACTCCAAATTTGCAGCTGTGAGATATTCCTCTTAGCTTAGTTAGAACTTAAGGGGACATCATGAAACCTTTCTTGAGTTAGGATAGCATACTTATTATAGACTTTTTGTTCTCGACGTTTTCGTCGAAGTGTTTATGAGCCAGAACCCGAAAAAATTTATATTACTTCTAACAATAGCAGAAAAATGAAAACCGACTGACGGTTTGTGTAACGATTTAACTTGATGAAAATCTTAGATGGGTGTAATGTATGTTGAATCAATTGTAACAGTGGTTAAATTGTGGAAACAAAGAATGTTGAATCAATAGTAACAGTGGTTAAATTGTGGAAACAAAGA

mRNA sequence

CTGATCGCAGGTCGCCAAGGTTTTTCTACTGCCTCCCGGCAGCTGCTCAGTGTACGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAGGGCATGAGGACGAGTGTTGAAGCAATTCTTCTGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCAAATTCACCAGCCCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGCTTGCAAGACAAGAACTTAAAATTTGTGGCATGAACAGACTCCAAATTTGCAGCTGTGAGATATTCCTCTTAGCTTAGTTAGAACTTAAGGGGACATCATGAAACCTTTCTTGAGTTAGGATAGCATACTTATTATAGACTTTTTGTTCTCGACGTTTTCGTCGAAGTGTTTATGAGCCAGAACCCGAAAAAATTTATATTACTTCTAACAATAGCAGAAAAATGAAAACCGACTGACGGTTTGTGTAACGATTTAACTTGATGAAAATCTTAGATGGGTGTAATGTATGTTGAATCAATTGTAACAGTGGTTAAATTGTGGAAACAAAGAATGTTGAATCAATAGTAACAGTGGTTAAATTGTGGAAACAAAGA

Coding sequence (CDS)

ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAGGGCATGAGGACGAGTGTTGAAGCAATTCTTCTGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCAAATTCACCAGCCCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA

Protein sequence

MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

Homology

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BLAST of CmaCh06G010910 vs. Swiss-Prot
Match: CFIS2_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 4.1e-104
Identity = 177/200 (88.50%), Postives = 188/200 (94.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS AL PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

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BLAST of CmaCh06G010910 vs. Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.8e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

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BLAST of CmaCh06G010910 vs. Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.8e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of CmaCh06G010910 vs. Swiss-Prot
Match: CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.8e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of CmaCh06G010910 vs. Swiss-Prot
Match: CPSF5_PONAB (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.8e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

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BLAST of CmaCh06G010910 vs. TrEMBL
Match: A0A0A0L8Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 3.4e-113
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+LQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of CmaCh06G010910 vs. TrEMBL
Match: A0A061G0V3_THECC (Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN=TCM_015155 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 3.2e-111
Identity = 194/200 (97.00%), Postives = 198/200 (99.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of CmaCh06G010910 vs. TrEMBL
Match: V4U7E9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 5.4e-111
Identity = 194/199 (97.49%), Postives = 197/199 (98.99%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMIT 200
           PVISTIPQQLSRFQFNMIT
Sbjct: 181 PVISTIPQQLSRFQFNMIT 199

[Close]

BLAST of CmaCh06G010910 vs. TrEMBL
Match: A0A0D2MX37_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 1.6e-110
Identity = 193/200 (96.50%), Postives = 197/200 (98.50%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MV SPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVMSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of CmaCh06G010910 vs. TrEMBL
Match: B9R9C7_RICCO (Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_1496400 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 4.6e-110
Identity = 193/200 (96.50%), Postives = 196/200 (98.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MV S VVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVNSSVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of CmaCh06G010910 vs. TAIR10
Match: AT4G25550.1 (AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit)

HSP 1 Score: 378.6 bits (971), Expect = 2.3e-105
Identity = 177/200 (88.50%), Postives = 188/200 (94.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS AL PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of CmaCh06G010910 vs. TAIR10
Match: AT4G29820.1 (AT4G29820.1 homolog of CFIM-25)

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-64
Identity = 111/193 (57.51%), Postives = 145/193 (75.13%), Query Frame = 1


Query: 6   VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHIL 65
           +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LLV+  KHPH+L
Sbjct: 28  MVDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVL 87

Query: 66  LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFE 125
           LLQ  N+  KLPGGRL+PGE++IEGLKRKL SKL  N       +++GEC+ +WWRPNFE
Sbjct: 88  LLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFE 147

Query: 126 TVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVIST 185
           T+MYP+ PP+I  PKEC KLF+V L   + F VPKN KLLAVPL +L++N + YGP++S 
Sbjct: 148 TLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQ 207

Query: 186 IPQQLSRFQFNMI 199
           IP+ LS+F FNM+
Sbjct: 208 IPKLLSKFSFNMM 220

[Close]

BLAST of CmaCh06G010910 vs. NCBI nr
Match: gi|449432171|ref|XP_004133873.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus])

HSP 1 Score: 415.6 bits (1067), Expect = 4.9e-113
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+LQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of CmaCh06G010910 vs. NCBI nr
Match: gi|590672648|ref|XP_007038670.1| (Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao])

HSP 1 Score: 409.1 bits (1050), Expect = 4.5e-111
Identity = 194/200 (97.00%), Postives = 198/200 (99.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of CmaCh06G010910 vs. NCBI nr
Match: gi|567858442|ref|XP_006421904.1| (hypothetical protein CICLE_v10005929mg [Citrus clementina])

HSP 1 Score: 408.3 bits (1048), Expect = 7.8e-111
Identity = 194/199 (97.49%), Postives = 197/199 (98.99%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMIT 200
           PVISTIPQQLSRFQFNMIT
Sbjct: 181 PVISTIPQQLSRFQFNMIT 199

[Close]

BLAST of CmaCh06G010910 vs. NCBI nr
Match: gi|1009122478|ref|XP_015878023.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ziziphus jujuba])

HSP 1 Score: 408.3 bits (1048), Expect = 7.8e-111
Identity = 194/200 (97.00%), Postives = 197/200 (98.50%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMI T
Sbjct: 181 PVISTIPQQLSRFQFNMIAT 200

[Close]

BLAST of CmaCh06G010910 vs. NCBI nr
Match: gi|823149430|ref|XP_012474578.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Gossypium raimondii])

HSP 1 Score: 406.8 bits (1044), Expect = 2.3e-110
Identity = 193/200 (96.50%), Postives = 197/200 (98.50%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MV SPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVMSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

The following BLAST results are available for this feature:

BLAST of CmaCh06G010910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CFIS2_ARATH	4.1e-104	88.50	Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE...	[more]
CPSF5_BOVIN	5.8e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT2...	[more]
CPSF5_HUMAN	5.8e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUD...	[more]
CPSF5_MOUSE	5.8e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nud...	[more]
CPSF5_PONAB	5.8e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUD...	[more]

BLAST of CmaCh06G010910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8Y2_CUCSA	3.4e-113	99.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1	[more]
A0A061G0V3_THECC	3.2e-111	97.00	Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN...	[more]
V4U7E9_9ROSI	5.4e-111	97.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1	[more]
A0A0D2MX37_GOSRA	1.6e-110	96.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1	[more]
B9R9C7_RICCO	4.6e-110	96.50	Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_...	[more]

BLAST of CmaCh06G010910 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25550.1	2.3e-105	88.50	Cleavage/polyadenylation specificity factor, 25kDa subunit	[more]
AT4G29820.1	1.5e-64	57.51	homolog of CFIM-25	[more]

BLAST of CmaCh06G010910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432171\|ref\|XP_004133873.1\|	4.9e-113	99.50	PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus]	[more]
gi\|590672648\|ref\|XP_007038670.1\|	4.5e-111	97.00	Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao]	[more]
gi\|567858442\|ref\|XP_006421904.1\|	7.8e-111	97.49	hypothetical protein CICLE_v10005929mg [Citrus clementina]	[more]
gi\|1009122478\|ref\|XP_015878023.1\|	7.8e-111	97.00	PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ziziphus jujuba]	[more]
gi\|823149430\|ref\|XP_012474578.1\|	2.3e-110	96.50	PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
cellular_component	GO:0005849	mRNA cleavage factor complex
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003729	mRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G010910.1	CmaCh06G010910.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G010910	Cucsa.258240	Cucumber (Gy14) v1	cgycmaB0727
CmaCh06G010910	Cla021247	Watermelon (97103) v1	cmawmB798
CmaCh06G010910	Csa3G122550	Cucumber (Chinese Long) v2	cmacuB814
CmaCh06G010910	MELO3C006125	Melon (DHL92) v3.5.1	cmameB763
CmaCh06G010910	ClCG05G001670	Watermelon (Charleston Gray)	cmawcgB737
CmaCh06G010910	CSPI03G08920	Wild cucumber (PI 183967)	cmacpiB826
CmaCh06G010910	CmoCh06G011170	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G010910	CmoCh14G020850	Cucurbita moschata (Rifu)	cmacmoB797
CmaCh06G010910	Lsi05G020260	Bottle gourd (USVL1VR-Ls)	cmalsiB764
CmaCh06G010910	Cp4.1LG03g16820	Cucurbita pepo (Zucchini)	cmacpeB837
CmaCh06G010910	Cp4.1LG08g01490	Cucurbita pepo (Zucchini)	cmacpeB854
CmaCh06G010910	MELO3C006125.2	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G010910	Cla97C05G082070	Watermelon (97103) v2	cmawmbB856
CmaCh06G010910	Bhi01G000268	Wax gourd	cmawgoB1009
CmaCh06G010910	CsGy3G009010	Cucumber (Gy14) v2	cgybcmaB427
CmaCh06G010910	Carg24942	Silver-seed gourd	carcmaB0919

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G010910	CmaCh14G020240	Cucurbita maxima (Rimu)	cmacmaB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G010910	Cucumber (Chinese Long) v3	cmacucB0965