Cla021247 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021247
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Cleavage and polyadenylation specificity factor subunit 5 (AHRD V1 ***- E3TGL2_ICTPU); contains Interpro domain(s) IPR016706 Cleavage and polyadenylation specificity factor, 25 kDa subunit
Location	Chr5 : 1560602 .. 1568597 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCTGATCGTCTTGCTCGCATGAAAGTCAAGTACTGCAAATTTTCTCGATTCCTTAAACCCTAGTTTTTGTTGTTTTCAACGTCTTAGGGTTGTATTGTTCTTGAAAGCTAGGAACTCTGACCGTTTCTTATGGGGGATTCTTGGTCATTTTACATTTGATTCGTATATCACTGCATTGAATCGTGGAAAATGCTGTATGATTATGATTATCCTAGGCCATTTGTTGCAAGATTTGATCATACAGGGTTTTATGAAATTACATGACGCAAAGTATAGAGCCGAGTAGATAATGTGTTTCTAATTTCATGAAAATGAGCATTTTGTGGGGGGGGGGGGGGGGGCTGGCTTTGAAACAGAGTTCTGGGTGAAAGTTTTATTTATTTATTTTATTCAAGCTATTTGTTCATAGGTAAACTTACTGTTTTCTTATTGTTATTTGTTTCTTCTTTATTCCGGGCCTGAAAATTTGATCTTCCATTTACTGGCTTTGGAGGGACATTGAGTGGAATGAGTAACATGTACTGATGTTTGGTTCACAGCTATATGAAGGAAGGCATGAGGACAAGTGTTGAAGCAATTCTGCTGGTTAGTGTGTACCTTCTTCATATATAATCTTAATGTACTCATGGCCTTGCTTTGTTATTAATATTATAACAATAAAAAAGAGTAGCGTTTAAATAGATGATTAGAATGTAGGGTTACTAGTTGTGTCTTGATTTGTGAATTGTGAATCATTGCAAATGCTTTTGTAACAAATTATTATATTGAAAAGGGGAAAAAAAATATTGTCTTACTTATCTACATCATTTATCTAAATTATTAGCATACAGGTATGCAGTTATCAGGGAAAATTGTGTTGTTGAATCCTCTGTTCTCCTATTTGTTCTTTACCTGAGTGGTATGCATTGAATTGAAAGACAGGGATCACTAAATCTGAGCATTCATCATTATCAACTTTTAGATTATACCAAAAGCAAACATCCAATCAAATCTCTGTATGCTTTAACATGGGATCTCCTCGCTCGTGATTGCTTCGAACTGGAAATTTTGCTGTAATCCATGGAAGCCCGTGTACATTTTAATACTCAATGGATGCATTGTTCTTATATATATACATTTTTTTTTAAAAAAAGAATTATGATTACATTTTATTTCAAATATATTAACTAATCTATTTTTGTTTGCCGAGTTAAAGTAGTTATTTTAGTACCTCTGTAACTGACATTTATGTATCTGGTAAAACAACTCCAAAATATCCAAAATCTTGTATGATTTTAAGCCAACCTCAAGTTGGATTTAAAATACAGAATGTGACCCAAAAATTCACGAGCAATCAAGTTCCTAGATGGATGGTTGGAGATGCCTCATTCTTTCTAAATCTGGTAGGGTGAACCGTGCCCAACCCAATCCCTCCTCAGTAGCTTGCCTCTCTATCACTTTTCTCTCCCAAGTGCTCCGAAGAACGTTGCGACTTCTATGGAAAAATTTATTAGACACTTTGTGTGGAATGGTGGTGTTTACAGACTTGATAGTAACTTAGTTAGATGGGATTAGACAGCCCTGCCAATTGTCCTTGGGGGTGGGCTCCCTTCAACATTGAAATACCTCTCTTCTCACCAAATGGATTTGGAGATTTACTCAAGAGAAGAGTTCTTTGTGGCACAAGGTTATTTCTAGCATTTATGGTGTTAAACCTCAGGGTTGGATGATTGATGACTTCAAAAAAAGGAAAAAGGAAACAGGTCTTGAGTGGATATTGCAAGGAGTTACCCCTTCTTAGCTCGTTTTTCCAAATTCAAGGTAGGTTGTGGCAGGAACATCTGCTTTTGGCATGATATTTGGGTCGAGCAAGCTCTTTGGAAAGATTATTTTCCTAACATTTACACCGTATCTTTTATAAAGGAGCATTGTCTTTGATTTTTGGGACAAGAATAACCCCGTGTGGGACCATAGCCCTAGAAGAGGGCTTTTTTATTGTGAGATTGATAGTTGGGTTGGCCTTGTGGAAAAGCTTAACTCCATTCAATTGGGAGAGGGTGTGGATCAAATTCTTTGGTCTCTTGAAGGCTATAGTATGTACTTTAGTAATTTGACCTTTCAAAACTACTATTAGAGACATTCATTTTTCCCATAGGGATTCCCCGTTTACGTAGGGAATGGGGAAAAAATTCTTCGTAGGCTAAAAGGGGACACAGACCCTGGCCCAGTGTTTTAAAAAGCCCTCTTGGGCACGCACCTAGTCTCAAGGCATAAGTCTAGCGCCTCGCTTTTCAAGGCGAGGCTCACAAAATAAGGCACGCCCAAGGCCTTGGGATTTTGTCTTTATTTTAAAAATATTATAATAATTAGGATTTTTCCTTCTTTATTAAAAAAAAAAAAAAAGAAAAGTCAAACTTACTAAGCTTACGAGCAAAATTTCATGTGTTTAGGGTTTTTTTTAATTTTTTTTTTACATTTCCACATCAACTATGTATTGCTTTATGTGTTTAGGGTTTTTTTTTTTCACATTTCCACTTCAACTAAGCTTAAATGCAAAATTTCATGTCTTCTTTATGTATTAATTTTATATATAGTTTGCCTCACAAAAAATTTTTTGCGCCTTGAGCTTTAAAAAACATTGCCCTACCCTATTAGCCTTTTTTTTTTTGTTTATTATAATAATTTAATGTTTCAAATTTTATTGTTTAATGGTCAAGAAAATGAAGATGTTTGAACTTTGAATTGAACATTTAAATTTAGATTATATATATATATGAATAATTTAATCGGTAATTATTTTTTTTACTAGAAAATTAGAGTAATTTCTCTTTAAATTCAAATTTCCACGTGGAACTAATCATAGAGAATTTAACTATTCAGTTCAACTTTTTTTATAGTAGTGATTTACGTTAACGGTTTTTTCCCCTCTCTCCCTTCTTTTATTTTTTTGGTTAATTAAAATTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAAACAAACAGGAAAATTTCCCCACGGGGAACTGGATCCCCGCCCTAATCCCCATGGGGAATTTCACAAGGATGGGGAATGAATGGGGAGCGAGGAAGCCATCCCAGTCCTCTGGACATCTCTACTTGCTACTAAGCGTACTAAGGCCAATATGACTATGACGAGTAGAATTTGGAAGCATAAATGCTTGAAAAAGATGAATGTCTTCCTTTTGTCCTTGGTTTCTAGAAGTCTAAATATTGATGACAAACTTCAAAGAAAATTTAGAAGGTGGTCTCTTTCGCTTTCGAGTTGTAGGATGTGCTTGGATATGGAGGAAACCCTTGATCACCTCTTACTCCATTGTGACTTTGGCGCAAGATCATGGAGGTACTTGGTTGATAATGTAGGCTTGTCTTTTTGACTCCTTAAGAAAGTGGATGATTGGCTTACGGAAGGTATTCACGCATGGAACTTGATAAGAGAAGCCAAGATTGTGAAGTAGTGCCTTTAGAGCTCTTTTATGGCACATTTGGAAGAAAAGAAACCTTTGCTCTTTTGAAGATATGTCTTTTTGCTTTGAGTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTGGAAATATTATAATCCAAAGTCTTGGTGGATTTCTTTACCTACGAAATTCTTTTGTAGCTACAGCCTGTTGATGATTATTAGCGATTGGAAGGCTCTTAGGTGTAGTTCTCTCTCTCTCTTTCTTGGAGGAGGGTACTGTCTACCCTGGACCCTTGGGGTGTTCTTGTTCTCTTTTGGAATATATTCCATTTGTTTCCTTTTTTTGAAAAAAAAAGCCATGAGCAAGATGTAAAACAAGCTCACTGAAGTTGAGGCTTTAGGAATTGTCTACCATGCATTAGCAATTTATTTATGACATTTGTGGATGAAATTAAGTCCAAATGTAGTTGGGCAATAGGATTTCAGTTCATTGCATCATGCTTCCCAACCTGGGCATGATCTAAATGCCATTCTACTGGTAAGATGGTGACATGACAATAGCTAGATACATCCTTTGTTAAGTTGGCAAGCTCGAGCACTGAAGAGGATCTCTGCTCTTTATTCTAGATTTGAAGGAATTCACTCTCTCCTTGAAGGTCTTGACTAAGGTTCCATTAGGTCTAATAATAAATTAATGATGAAGCAGCCTTTAAAGAAAATGAGGTTTTACTGGTGATGAGAAGGATGGAAAAGATAAACCATTAAGTTGTGATGGACAAGGATTAATTTTACTTCCCCACCTAGCTACTTTAGGTTGGGGGTAGGTCCTGGTGGGGAAGTTATAGACGAATTCTACTAAAAAAAAGATATAGGTATAGGTAAAATATCTCTCTTCTATGCAAAGCGAATTTTTTTAACAGTGGAGTCTACAAAAAAGTTCCATTTTGTTAAAAAAAATACCAAAAAATTCTATATTGTTTCTACAGCAAGCCTTCTTCCCTTTCAGCTAGCGAAAAGACGGACCAAACCCTATCTATCGCCTCACGCTCTTNTTCCGGGGTCAAAGCAAAAGTATAGTGGACCTCACAAAGATCGATTCTCAAATATGCACTTCGAGCTTCTGACAAAATGAAGAAATCACATTGAAGAACCATAGCATTTCGTGATTCATTGGTAAATCAACTTTGATTCTCTATCAACCAATAATATGGGTCTTCTTTTTAGAGGTAGAAGCAACTTAGTATTGTAGGGAGAATGCTTTCAGACAACATTGCGCAGAAACGAGGAAGTCATGGAACATAGTTGAAGAGAAGTTGTGAAGATTGCATTTCATTTTTCAATAACGACTGTAAGAAGACCAAGCTGACGGAGGTTGGAGATTTGGATTCATTTGCTTAACTGCCTTTATTTATAAGCTTTTAGATTTAATGTATGTTGAAACTTGATAGACCAAAGCAAATGCTGCCACAGGCTACACTCAGAACTAGTGAACAGGAAGAGAAAACAAGAAAAGAAAGGCTAGGTTCTTAAGATCTCAAGAAGGCATACAATATGTTGACAGGCACTTTCTTACATCAGAACTTCATAACAGAGGTTGGGTGAAATGGATCTAGAGCTACATCTCTAATGCTACATTTTCTATTTTTGTCTATAGATGACCTAAGGGAAAAGATTCGGCCTCCAAGGACTGTTACTTATTTGAGGAGATTCGTTATCTTATTTTTGTTTCTAATTAATGAGAGCTGTGCTAAGTTGAATGCTGGATACAGTTACAGCCAGGTTTTTCTAGGAGGTAACATAGTCAGAAACGCCATCAAGATTAATCAATTGTAATATGTTGTTGATATTTCTACTTTATGTGCCTACTATAAGGCTGGCGTTGAAGAATCTGAGTAAGGTGCTGTAGCAGTTAAAGCAAGCATTAATGTGGATCATTTGCTGCTATCTCAGTCGTGTTTCAGGCTCTTGTTGGCAAGGATGGAGAATCACTGGGACTTTCATTCCTTGTGAGCTAGAAATATGGGCTCAATCAGGGAGGTGAAATACAACCGGGGGAGATAATAATGCTACTGGATGCCCTTAGACGTATATCTCCAAGTTCATATAGGAAACTAATAATTACCGTGTGCTGAAAATTGGAAGGAAATTCAATCTTTAGCCACACGAAGAATGGCAATTTGCATACCTCTTCCTTAGACTTAATTTTCCAAAAATTTTGGGAAAAAGATCAATGATCAATAATGGTTGGAATGCGAGGGTCACTAGAAGCTTGATTTTAAGAGAAATCTGTTGATAAGAAAAATGATCAATAATGGATGCTGAAATACAGGGGCTGCCTAACCTTTCAAATTTTGATAAGAAAAATGAACCATGTTGATGACTCTAAAGGAGTCCAGAAACAGGAGGATAAGGAATTCAATCCTAAAGCTAAAGAGGTTGGTAGAATAGGGCCTCAATTATACAAGGCACACTATGATTACAACAAACAACGTTCTTAGGGTACACCCAAGGGCAGTGGCAAAAAAGGATATCTCCCCTTAAACTTAGACTCTTTCTTTTTCTTTTCTTATTCTTTCTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCTCTTTTATTTTTAATAAAATTATAAGAAACAATTTCCATAGACTTAGACTTGTTTGTGAAGATTCTATAGTTTCTCTCAGCCTATAATTACAGCAACAGCAGCTTTGATAGAATTAGACCAGAGAATTCTAGTTTTCTGCCTTTTTGAGTTGGGCATTGAATGATTCTTAAAGTCACTGAGCTCTCTCCTTGTTGCAATTTAGTAACTGATATTCACAAGAGTCGTGTATTATACTGCGGTACCACTTTATCTTTTTCATTTTTGTCCTTTCAATTTCACAGGTGCAAGAACATAAACATCCCCATATTCTACTTTTGCAAATAGGCAATACCTTTTGCAAGCTCCCTGGGGGACGGTTGAAGCCAGGAGAAAATGGTAAGATTTTATATTCAATGGAAGCCCCCCACATCCCATTGAGTAAAAAATCTCTCTCTCATGTTTATTTTAACATCTGCAGAAATTGAAGGTTTAAAGAGGAAGCTCACGAGCAAACTGGGTGCAAATTCACCGTCTCTCCAGCCTGATTGGCAGGTTCAAATCATTTCTTCTCTTTTTGTGCGCAAATTTATTTACTGAAGTTATATATGTTCCTACGAGGAATTAGCTTCTTCATTGCAAACTTCCTGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGTATGTGGATCGCCCCACCCCCCCGCATAGTGCTTGATGACACCTTTTTGTGGCAACTTTGATCGTCAAAGTTTAAAACAATAGATCTGGAAAACTTATAATAAAAAAACAAAGAAAGTTAAATTAATAAAATAAACATTTTACACTTCTCAAATAAGTTACAAAGTTAAAAAGGTTAAACTTAAAGGGCTTATTGTTTATAATGCACATCAACATTTTGCTGCTTTAGTATTTTTCATCAATTTTTTTTTACTATACAATAGAAATGTTGGTTAACCCCTTATGTATTGAACTAACGGACATGTGAAGATTTCATGGAAATTTAATACCCTGACTTTGATGGGAAAAATATAGGGTATCATATATACTGATATATATCTTTTACAAAGATCATTTAATTGGATTCTGCTTTGTTGCCCTTTTTCGGCCTTCATTGTGTGAGAAGTGAGAATTGTAGATAATTCCCATCATTCATTATTCAAACTGATCTTATGGCCTCTTTATTCTCTCGTTCTTTCCTTCTTACTTCGATTAGGATTATAAAAAGAGCAGAAATCCTTTTCAGACAAAAAAAAAACTTTTATCTTTTATTTATACTTGACTTAACTGAATATTTTTTTTCATTTCCATATGGAAAAAGAAAAAATCTTAATCAAGGTTTTGGATGATCCAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTATGACAATGTGCAGGTACGTTGCATTTTTTCTTAGTAAAAACGAATTTCGTGCATATTAATTAATTTTATCATGTTGGGCAATGTCAAAAACCTGCTGAATTATAAGCAATTAGTATGTTGTGTGGTGGATATCAAGGGAAAGATAAATTATAGATTGATTTTCTGGATACTGGATGATACTGATAGTACCTGTAAATCCCAGTAGCCTCAAATTATCATGCTATTTACAAGCTAAATATTAGTTTTTGGTTTTTCGCACTCAATCACAGAGATATGGACCAGTTATATCGACAATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA

mRNA sequence

ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCTGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAAGGCATGAGGACAAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAACATCCCCATATTCTACTTTTGCAAATAGGCAATACCTTTTGCAAGCTCCCTGGGGGACGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAGCTCACGAGCAAACTGGGTGCAAATTCACCGTCTCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTATGACAATGTGCAGAGATATGGACCAGTTATATCGACAATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA

Coding sequence (CDS)

ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCTGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAAGGCATGAGGACAAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAACATCCCCATATTCTACTTTTGCAAATAGGCAATACCTTTTGCAAGCTCCCTGGGGGACGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAGCTCACGAGCAAACTGGGTGCAAATTCACCGTCTCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTATGACAATGTGCAGAGATATGGACCAGTTATATCGACAATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA

Protein sequence

MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

Homology

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BLAST of Cla021247 vs. Swiss-Prot
Match: CFIS2_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 3.5e-103
Identity = 176/200 (88.00%), Postives = 186/200 (93.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS +L PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of Cla021247 vs. Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.9e-65
Identity = 118/189 (62.43%), Postives = 139/189 (73.54%), Query Frame = 1


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Cla021247 vs. Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.9e-65
Identity = 118/189 (62.43%), Postives = 139/189 (73.54%), Query Frame = 1


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Cla021247 vs. Swiss-Prot
Match: CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.9e-65
Identity = 118/189 (62.43%), Postives = 139/189 (73.54%), Query Frame = 1


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Cla021247 vs. Swiss-Prot
Match: CPSF5_PONAB (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.9e-65
Identity = 118/189 (62.43%), Postives = 139/189 (73.54%), Query Frame = 1


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

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BLAST of Cla021247 vs. TrEMBL
Match: A0A0A0L8Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 5.8e-113
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Cla021247 vs. TrEMBL
Match: A0A061G0V3_THECC (Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN=TCM_015155 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 2.7e-110
Identity = 193/200 (96.50%), Postives = 198/200 (99.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Cla021247 vs. TrEMBL
Match: V4U7E9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 4.6e-110
Identity = 193/199 (96.98%), Postives = 197/199 (98.99%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMIT 200
           PVISTIPQQLSRFQFNMIT
Sbjct: 181 PVISTIPQQLSRFQFNMIT 199

[Close]

BLAST of Cla021247 vs. TrEMBL
Match: A0A0D2MX37_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 1.3e-109
Identity = 192/200 (96.00%), Postives = 197/200 (98.50%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MV SPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVMSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Cla021247 vs. TrEMBL
Match: B9R9C7_RICCO (Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_1496400 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 3.9e-109
Identity = 192/200 (96.00%), Postives = 196/200 (98.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MV S VVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVNSSVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Cla021247 vs. NCBI nr
Match: gi|449432171|ref|XP_004133873.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus])

HSP 1 Score: 414.8 bits (1065), Expect = 8.3e-113
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Cla021247 vs. NCBI nr
Match: gi|590672648|ref|XP_007038670.1| (Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao])

HSP 1 Score: 406.0 bits (1042), Expect = 3.8e-110
Identity = 193/200 (96.50%), Postives = 198/200 (99.00%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Cla021247 vs. NCBI nr
Match: gi|567858442|ref|XP_006421904.1| (hypothetical protein CICLE_v10005929mg [Citrus clementina])

HSP 1 Score: 405.2 bits (1040), Expect = 6.6e-110
Identity = 193/199 (96.98%), Postives = 197/199 (98.99%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMIT 200
           PVISTIPQQLSRFQFNMIT
Sbjct: 181 PVISTIPQQLSRFQFNMIT 199

[Close]

BLAST of Cla021247 vs. NCBI nr
Match: gi|1009122478|ref|XP_015878023.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ziziphus jujuba])

HSP 1 Score: 405.2 bits (1040), Expect = 6.6e-110
Identity = 193/200 (96.50%), Postives = 197/200 (98.50%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMI T
Sbjct: 181 PVISTIPQQLSRFQFNMIAT 200

[Close]

BLAST of Cla021247 vs. NCBI nr
Match: gi|823149430|ref|XP_012474578.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Gossypium raimondii])

HSP 1 Score: 403.7 bits (1036), Expect = 1.9e-109
Identity = 192/200 (96.00%), Postives = 197/200 (98.50%), Query Frame = 1


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MV SPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVMSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

The following BLAST results are available for this feature:

BLAST of Cla021247 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CFIS2_ARATH	3.5e-103	88.00	Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE...	[more]
CPSF5_BOVIN	4.9e-65	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT2...	[more]
CPSF5_HUMAN	4.9e-65	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUD...	[more]
CPSF5_MOUSE	4.9e-65	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nud...	[more]
CPSF5_PONAB	4.9e-65	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUD...	[more]

BLAST of Cla021247 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8Y2_CUCSA	5.8e-113	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1	[more]
A0A061G0V3_THECC	2.7e-110	96.50	Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN...	[more]
V4U7E9_9ROSI	4.6e-110	96.98	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1	[more]
A0A0D2MX37_GOSRA	1.3e-109	96.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1	[more]
B9R9C7_RICCO	3.9e-109	96.00	Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_...	[more]

BLAST of Cla021247 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432171\|ref\|XP_004133873.1\|	8.3e-113	100.00	PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus]	[more]
gi\|590672648\|ref\|XP_007038670.1\|	3.8e-110	96.50	Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao]	[more]
gi\|567858442\|ref\|XP_006421904.1\|	6.6e-110	96.98	hypothetical protein CICLE_v10005929mg [Citrus clementina]	[more]
gi\|1009122478\|ref\|XP_015878023.1\|	6.6e-110	96.50	PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ziziphus jujuba]	[more]
gi\|823149430\|ref\|XP_012474578.1\|	1.9e-109	96.00	PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000086	NUDIX_hydrolase_dom
IPR015797	NUDIX_hydrolase-like_dom_sf
IPR016706	Cleav_polyA_spec_factor_su5

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0003729	mRNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005849	mRNA cleavage factor complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006378	mRNA polyadenylation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
cellular_component	GO:0005849	mRNA cleavage factor complex
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003729	mRNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU52914	watermelon EST collection version 2.0	transcribed_cluster
WMU68520	watermelon EST collection version 2.0	transcribed_cluster
WMU73100	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021247	Cla021247.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU73100	WMU73100	transcribed_cluster
WMU52914	WMU52914	transcribed_cluster
WMU68520	WMU68520	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000086	NUDIX hydrolase domain	PROFILE	PS51462	NUDIX	coord: 46..171 score: 8
IPR015797	NUDIX hydrolase domain-like	GENE3D	G3DSA:3.90.79.10		coord: 43..104 score: 5.
IPR015797	NUDIX hydrolase domain-like	unknown	SSF55811	Nudix	coord: 49..152 score: 3.7
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PIR	PIRSF017888	CPSF-25	coord: 1..200 score: 1.3
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PANTHER	PTHR13047	PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT	coord: 1..200 score: 1.2E
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PFAM	PF13869	NUDIX_2	coord: 6..193 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021247	Cla97C05G082070	Watermelon (97103) v2	wmwmbB206
Cla021247	Csa3G122550	Cucumber (Chinese Long) v2	cuwmB233
Cla021247	MELO3C006125	Melon (DHL92) v3.5.1	mewmB461
Cla021247	ClCG05G001670	Watermelon (Charleston Gray)	wcgwmB286
Cla021247	CSPI03G08920	Wild cucumber (PI 183967)	cpiwmB231
Cla021247	Cucsa.258240	Cucumber (Gy14) v1	cgywmB479
Cla021247	CmaCh14G020240	Cucurbita maxima (Rimu)	cmawmB242
Cla021247	CmaCh06G010910	Cucurbita maxima (Rimu)	cmawmB798
Cla021247	CmoCh14G020850	Cucurbita moschata (Rifu)	cmowmB231
Cla021247	CmoCh06G011170	Cucurbita moschata (Rifu)	cmowmB793
Cla021247	Lsi05G020260	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021247	Cp4.1LG03g16820	Cucurbita pepo (Zucchini)	cpewmB613
Cla021247	Cp4.1LG08g01490	Cucurbita pepo (Zucchini)	cpewmB845
Cla021247	CsGy3G009010	Cucumber (Gy14) v2	cgybwmB217
Cla021247	MELO3C006125.2	Melon (DHL92) v3.6.1	medwmB447
Cla021247	Carg21013	Silver-seed gourd	carwmB0487
Cla021247	Carg24942	Silver-seed gourd	carwmB0647
Cla021247	Bhi01G000268	Wax gourd	wgowmB204

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021247	Watermelon (97103) v1	wmwmB118
Cla021247	Melon (DHL92) v3.5.1	mewmB470
Cla021247	Cucumber (Chinese Long) v3	cucwmB239