Carg24942 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24942
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cleavage and polyadenylation specificity factor subunit 5
Location	Cucurbita_argyrosperma_scaffold_290 : 82595 .. 87483 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGACCATTTAAACCATTAACCCCGCAGAACTCCCAAGGACTGATCGCAGGTCGCCGAGGTTTTTCTACTTCCTCCCGGCAGCTGCTCAGTGGACGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAAGTACTGCTAATTTACTCGATTTCTTAAACCCTAACTTTATGGTTTTTTCAACGTTTTAGAGTTGTATTTTCTCGAAAGTTACGAACTCTGGCCGTTTCTTAGTGTGGATTCCTGGTTATTTTACATTTGATGTGTTTAGCTTTACTAGAAACCATTTGATGTGTTTCTAATTTCAAGAAATGCGCGAGCTTGGACTAGAGTTCTGGATGAAATTGTGTTATTGATTTTATTCAAGCCACTTGTTCGTTGATAAACTCAGTGCTTTCTTATTGCTATTTGTTTCGTTGTTTCGTCATCGCCTGGAAATTTTGTCTTCCATTTATTGGTTTTGGAGGGGCATTGACGGGAATGAGTAACTTGTACTGGTTCTTGGTTCACAGCTACATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGGTTAGTGCGCATCTTCATCATATTTCATCTCAATGTACTCATGCCCTTACTTATTGTTATTATTTTTCTAAAAAAATTAAGTTTAAGGAGATCATTAAGATATAGGTGTACTAATTGGATGCCATGGTTTGTGTTTTTCAGTTGATATTGAAATTCATTGAACTGTGAATCACTCAAATGTTTTATAACGAATTATAATATTTAAAAGTCACAAAAATATTTATCGTCTTACATATCTACATTCTTCATCTAGAATATTTGCGTATATGTATGCTATTAGAAGGGAAGTTTCGTTGCTGAATCCTTTATTGTCCTATCTGATCTTTACCCGAGCAGCACGCGTTGGAAGACAAGATGACTAAATTTGAACTTCCATCATTGTCATCTTTTAGGTTATACCCGCCTATGGTTTCCTCCAGCTAGAAAATGTAACATGGGATCTCCCCTCCTATGACTGCTTCCAACTGGAAAATTTTCCCATAATCCTTCGAAGCCCATGTGCATTTTGATGCTCAACAAACATGTTGGTTCTTATATGTATGTACTGATTACATTTGATGTGTAATATATTCATTAATCTGTTTTTGGTTGCATAGCTGAAGTAGATATTTTAGTACCTCTGTAACTGACATTTATGTATTTTGCAAAACAGCTCCAAAATAACCAAAATAACCAAAATATTTTAGGATTTAAGCCAAGGCAAGTTGGATTTGAAATACAGAATGTGACCCAAAATGTAAAAACAAGTTCACTGAAGTTGATGCTTTAGGAATTTCCTACCAGACAATAACAATTTATTTACGACATTTGTGGATGAGATGAAAGTTCAACTGCATGTACTTGGGAGAGCCAGTAGGATTTCAGTTCATCGCATTGTGCTTCCCAACCTACATATAGTCTAAGTAGCATTCTACTAGTATGATAGTGACAATAGCTGAGTACATCCTTTGTTAAGTTGGCCAGCTTGAGGACCGACGAGGATCTCGGCTCTTTATTCTAGAGGTGAAGGAATCGACTTTCTCCTTAATGGTCTTGATTAAGGTCCCATTTAGGAAATTAGGGAGGCAATAATACTGCAACCAGGAGAGGTAATAATACTGCCGGAAGTCTCAGACGTATATCTCCAAGTTCATTTAGGAAATTAATAATTACTGTGCTGAAAATAGGAAGGGAATCCTATAAAGTCTTGGAAGATCTTTAGCCACAAAAAGGAGGATGGTTACTTGCTTCCACAAATTTGGGGAAAAAGATCAACAACCAATATTTGTTGAAATGCGAGGGTTTCTAGAAGCTTGATTTTTAGAGAAGCCTGTTGGATGTTGAAATACAGGGGCAGCCTAATGCTTCAAATTTTGATAAGAAAAAGAGCATGAAACCAATGGGAGACCAAAAACAGGGGGATAAGCCGTCCAACCCCGAAGCTAAAGGGGTTTACAGAATAGGACCTCAATTATACAAGGCATACTATAATTACAAAAAGCAACGTGCGAATTGAAACAAATACTTTATTGAGTTCTTTTTACGTTGCTTTTTGTTTTACTCCTTTATGGAGTTTGTATCATTTGAGCAATAGTATATTTTCATTACATCAATGAAACGTTTTGTTTCTTGTTCAAAAAATTACAAAAACAATGTTTTTTGGGCACACAAAGAGGAAGCTGATTGGAATGCAGGATCCTTGCACCCCTTAGATTTGTTTCTGAAGATTCTATAGTTCATCTCGGCTTATGGTTCAAACAACAGCTTTGATAGAATTAAACAAGGGAGTTCTAGTTTTCTGCCATTTTAAGTTTGGCACTGAATGTTTCATTAATTCATTAACTTTCTCTTTAGTTGGTGTATTTTAGTGACTAATATTTAAGAGAACCATGTACTTTACCGTGATGGAATTTTATATTTTTCATTTGTTCTTTTCACTTCCACAGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGGTAAGTTTTTATATACAATTGAAGCCCCCCACATCCGATTGAGTAAAATATCTCTCTCATGTTTCTTAACATCCGCAGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTCGGTGCAAATTCGCCTGCCCTCCAGCCTGATTGGCAGGTTTGGGTCATCTCTTGCTGTGTGCAAATCCATTCGCAGAAGTTTTATTTGTTTCTGCCCAAAGTTATATTATTCATTGCACATTTTCTGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCAAAGGTATGATCTCTCTCTCTCTCTCTCTCTCATGTTCCCCAGCCGCCAGCAGTGTTGATAGCACTTTTTTGGTGGTGACTTTGATAGGGAAGAATGTAGGCTATCAGTTATCTATCTATATGCATGTATGTATGTGTCTCTGTATACTATACAGATTATTGATTACTCAAGCTGATTGGATAGCCTCTTTACCCCGGGAAGGCCCTTGTAACAGCCCAAGCCCACCGCTAGTAGATATTGTCCTTTTTGGACTTTCCCTTTCGAGTTTTTATAACGTAGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCATTCCTCTCTCCAATCGACGTGGAATCTCACAATTCACCGCCCTTCAGAGCCCAGCATTCTTGCTGGTACACACGTTCATCTCTCAAATCAATGTGGGATCTTTCCAACGTCCTCGCTGGCACACCGGTGTCTGGCTCTGATACCATTTGTAACAGCCCAAGCCCATTGCTATTAGATATTGTCCTCTTTGGGCTTTTTCTTTCGAGTTTTTATAACGTGTCTCCTAGAGAGAGGTTTGCACACCCTTATAAAGAATGCTTCGTCCTGGGTCTCACAATGGTCCACCATTTTCTTCTTACTTTGATTGGCATTATAAAGAGAGTTGAAATTATTTTTAGGAACCTTTTTTTCCCATATGGAAAATGAGAAGAAAAAGAAAATCCTAATTAGGGTTTTTGATGATTCAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCAGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGGTAAGTTGCATTTTTCTTTGTAGATCCTCATAAGTAGGGGGAAAAAAAAAGTTTATTATCATGCATATTCTTAAGCGATTTTTGGCATGTCGGGCAATATCGAAAACCTGCTTAATTATAAGCAATTAGTATGTGGTGGTGGTGGTTATCAAGGGATAGATGAATTAAGATAGATTTTCTGGATGCTGGATGATACTGATAGTACATGTAAATCCATTAGTCTCAAAATACCATGCTGTTTATTAGCTAAATACTAGTTTTCGGATATCGCACTTGATCACAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGCTTGCAAGACAAGAACATAAAATTTGTGGCATGAACAGACTCCAAATTTGCAGCAGTGAGATATTCTCCTTAGCTTAGTTAGAACTTAAGAGGACATCATGAAACCTTTCTTGAGTTAGGATAGCATACTTATTATAGACTTTTGTTCTCGACGTTTTCGTCGAAGTATTTATGAGCTAGAACCCGAAAAATTTATATTACTTCTAACGATAGCAGAAAAATGAAAACCGACTGACGGTTTGTGTAACGATTTAACTTGATGAAAGTCTTAGATGAGTGTAATGTATGTCTGTTGAATCAATAGTAACAGTGGTCAAGTTGTGGAAACTCAGATTTTCTGGCCTTAGCTCTCTGTTTCTCAATTGAGTCATTTGTTAGATTTTTTTGTAGTCTTTCCTTCCTATGATAGGATTTCCTGTTTCTTGGGCTCTGCTCACTCGTCTACGCTTTGATAAGAATGAATCTTTCGTTGTGTAAGGTTGCCCCGGAGAGAGAGGGCATGAAGAGGGCATGAAGAGTTCGCCAATAATACCTGCTACTCCTACTTTCTCTTGACCAAAAACAGAAAACATAGGGCATGAAGAGGTCGCCAATAGTACCTGCTGCTCCTACTTTCTCTTGACTAGAAACGGAAAACGTAAAGAGATTTAGTAGGTGATTCAGGACTAGAGACGGACAACGTAAAGGGATTGCAATTACCT

mRNA sequence

AAAAGACCATTTAAACCATTAACCCCGCAGAACTCCCAAGGACTGATCGCAGGTCGCCGAGGTTTTTCTACTTCCTCCCGGCAGCTGCTCAGTGGACGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTACATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTCGGTGCAAATTCGCCTGCCCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCAAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCAGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGCTTGCAAGACAAGAACATAAAATTTGTGGCATGAACAGACTCCAAATTTGCAGCAGTGAGATATTCTCCTTAGCTTAGTTAGAACTTAAGAGGACATCATGAAACCTTTCTTGAGTTAGGATAGCATACTTATTATAGACTTTTGTTCTCGACGTTTTCGTCGAAGTATTTATGAGCTAGAACCCGAAAAATTTATATTACTTCTAACGATAGCAGAAAAATGAAAACCGACTGACGGTTTGTGTAACGATTTAACTTGATGAAAGTCTTAGATGAGTGTAATGTATGTCTGTTGAATCAATAGTAACAGTGGTCAAGTTGTGGAAACTCAGATTTTCTGGCCTTAGCTCTCTGTTTCTCAATTGAGTCATTTGTTAGATTTTTTTGTAGTCTTTCCTTCCTATGATAGGATTTCCTGTTTCTTGGGCTCTGCTCACTCGTCTACGCTTTGATAAGAATGAATCTTTCGTTGTGTAAGGTTGCCCCGGAGAGAGAGGGCATGAAGAGGGCATGAAGAGTTCGCCAATAATACCTGCTACTCCTACTTTCTCTTGACCAAAAACAGAAAACATAGGGCATGAAGAGGTCGCCAATAGTACCTGCTGCTCCTACTTTCTCTTGACTAGAAACGGAAAACGTAAAGAGATTTAGTAGGTGATTCAGGACTAGAGACGGACAACGTAAAGGGATTGCAATTACCT

Coding sequence (CDS)

ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTACATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTCGGTGCAAATTCGCCTGCCCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCAAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCAGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA

Protein sequence

MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

Homology

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BLAST of Carg24942 vs. NCBI nr
Match: XP_022147484.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Momordica charantia] >XP_022950750.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita moschata] >XP_022974610.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita maxima] >XP_022975252.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like isoform X1 [Cucurbita maxima] >XP_022975253.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like isoform X2 [Cucurbita maxima] >XP_022975430.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita maxima] >XP_023541013.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 416.8 bits (1070), Expect = 4.2e-113
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

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BLAST of Carg24942 vs. NCBI nr
Match: XP_004133873.1 (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus] >XP_008438064.1 PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis melo] >KGN56531.1 hypothetical protein Csa_3G122550 [Cucumis sativus])

HSP 1 Score: 415.6 bits (1067), Expect = 9.4e-113
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+LQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Carg24942 vs. NCBI nr
Match: XP_022924789.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita moschata] >XP_022980420.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita maxima] >XP_023528578.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 409.8 bits (1052), Expect = 5.2e-111
Identity = 197/200 (98.50%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITK KECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Carg24942 vs. NCBI nr
Match: XP_021293201.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Herrania umbratica] >EOY23171.1 Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao])

HSP 1 Score: 409.1 bits (1050), Expect = 8.8e-111
Identity = 194/200 (97.00%), Postives = 198/200 (99.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Carg24942 vs. NCBI nr
Match: XP_006421904.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Citrus clementina] >XP_006490376.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Citrus sinensis] >ESR35144.1 hypothetical protein CICLE_v10005929mg [Citrus clementina] >GAY41188.1 hypothetical protein CUMW_057510 [Citrus unshiu])

HSP 1 Score: 408.3 bits (1048), Expect = 1.5e-110
Identity = 194/199 (97.49%), Postives = 197/199 (98.99%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMIT 200
           PVISTIPQQLSRFQFNMIT
Sbjct: 181 PVISTIPQQLSRFQFNMIT 199

[Close]

BLAST of Carg24942 vs. TAIR10
Match: AT4G25550.1 (Cleavage/polyadenylation specificity factor, 25kDa subunit)

HSP 1 Score: 378.6 bits (971), Expect = 2.3e-105
Identity = 177/200 (88.50%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS AL PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of Carg24942 vs. TAIR10
Match: AT4G29820.1 (homolog of CFIM-25)

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-64
Identity = 111/193 (57.51%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 6   VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHIL 65
           +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LLV+  KHPH+L
Sbjct: 28  MVDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVL 87

Query: 66  LLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFE 125
           LLQ  N+  KLPGGRL+PGE++IEGLKRKL SKL  N       +++GEC+ +WWRPNFE
Sbjct: 88  LLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFE 147

Query: 126 TVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVIST 185
           T+MYP+ PP+I  PKEC KLF+V L   + F VPKN KLLAVPL +L++N + YGP++S 
Sbjct: 148 TLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQ 207

Query: 186 IPQQLSRFQFNMI 199
           IP+ LS+F FNM+
Sbjct: 208 IPKLLSKFSFNMM 220

[Close]

BLAST of Carg24942 vs. Swiss-Prot
Match: sp|Q8GXS3|CFIS2_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 4.2e-104
Identity = 177/200 (88.50%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS AL PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of Carg24942 vs. Swiss-Prot
Match: sp|Q3ZCA2|CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.9e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Carg24942 vs. Swiss-Prot
Match: sp|O43809|CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=9606 GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.9e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Carg24942 vs. Swiss-Prot
Match: sp|Q9CQF3|CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus OX=10090 GN=Nudt21 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.9e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Carg24942 vs. Swiss-Prot
Match: sp|Q5RAI8|CPSF5_PONAB (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii OX=9601 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.9e-66
Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Carg24942 vs. TrEMBL
Match: tr|A0A1S3AW26|A0A1S3AW26_CUCME (pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Cucumis melo OX=3656 GN=LOC103483285 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 6.2e-113
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+LQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Carg24942 vs. TrEMBL
Match: tr|A0A0A0L8Y2|A0A0A0L8Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122550 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 6.2e-113
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+LQPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Carg24942 vs. TrEMBL
Match: tr|A0A061G0V3|A0A061G0V3_THECC (Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao OX=3641 GN=TCM_015155 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 5.8e-111
Identity = 194/200 (97.00%), Postives = 198/200 (99.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Carg24942 vs. TrEMBL
Match: tr|V4U7E9|V4U7E9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005929mg PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.0e-110
Identity = 194/199 (97.49%), Postives = 197/199 (98.99%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMIT 200
           PVISTIPQQLSRFQFNMIT
Sbjct: 181 PVISTIPQQLSRFQFNMIT 199

[Close]

BLAST of Carg24942 vs. TrEMBL
Match: tr|A0A2H5NLZ1|A0A2H5NLZ1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_057510 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 1.0e-110
Identity = 194/199 (97.49%), Postives = 197/199 (98.99%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPAL PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMIT 200
           PVISTIPQQLSRFQFNMIT
Sbjct: 181 PVISTIPQQLSRFQFNMIT 199

The following BLAST results are available for this feature:

BLAST of Carg24942 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147484.1	4.2e-113	100.00	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Momordica charantia] >XP_022950750...	[more]
XP_004133873.1	9.4e-113	99.50	PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus] >XP_00...	[more]
XP_022924789.1	5.2e-111	98.50	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita moschata] >XP_022980420....	[more]
XP_021293201.1	8.8e-111	97.00	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Herrania umbratica] >EOY23171.1 Cl...	[more]
XP_006421904.1	1.5e-110	97.49	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Citrus clementina] >XP_006490376.1...	[more]

BLAST of Carg24942 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25550.1	2.3e-105	88.50	Cleavage/polyadenylation specificity factor, 25kDa subunit	[more]
AT4G29820.1	1.5e-64	57.51	homolog of CFIM-25	[more]

BLAST of Carg24942 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GXS3\|CFIS2_ARATH	4.2e-104	88.50	Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q3ZCA2\|CPSF5_BOVIN	5.9e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 ...	[more]
sp\|O43809\|CPSF5_HUMAN	5.9e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=960...	[more]
sp\|Q9CQF3\|CPSF5_MOUSE	5.9e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus OX=100...	[more]
sp\|Q5RAI8\|CPSF5_PONAB	5.9e-66	62.43	Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii OX=960...	[more]

BLAST of Carg24942 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AW26\|A0A1S3AW26_CUCME	6.2e-113	99.50	pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A0A0L8Y2\|A0A0A0L8Y2_CUCSA	6.2e-113	99.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122550 PE=4 SV=1	[more]
tr\|A0A061G0V3\|A0A061G0V3_THECC	5.8e-111	97.00	Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao OX...	[more]
tr\|V4U7E9\|V4U7E9_9ROSI	1.0e-110	97.49	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005929mg PE=4 ...	[more]
tr\|A0A2H5NLZ1\|A0A2H5NLZ1_CITUN	1.0e-110	97.49	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_057510 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0003729	mRNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005849	mRNA cleavage factor complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006378	mRNA polyadenylation

Vocabulary: **INTERPRO**
Term	Definition
IPR015797	NUDIX_hydrolase-like_dom_sf
IPR000086	NUDIX_hydrolase_dom
IPR016706	Cleav_polyA_spec_factor_su5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
cellular_component	GO:0005849	mRNA cleavage factor complex
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003729	mRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24942-RA	Carg24942-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PIRSF	PIRSF017888	CPSF-25	coord: 1..200 e-value: 2.3E-95 score: 316.0
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PFAM	PF13869	NUDIX_2	coord: 6..193 e-value: 2.6E-83 score: 278.1
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PANTHER	PTHR13047	PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT	coord: 4..199
None	No IPR available	GENE3D	G3DSA:3.90.79.10		coord: 6..197 e-value: 6.5E-90 score: 301.7
IPR000086	NUDIX hydrolase domain	PROSITE	PS51462	NUDIX	coord: 46..171 score: 8.767
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	SSF55811	Nudix	coord: 49..152

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24942	Cla021247	Watermelon (97103) v1	carwmB0647
Carg24942	Csa3G122550	Cucumber (Chinese Long) v2	carcuB0668
Carg24942	MELO3C006125	Melon (DHL92) v3.5.1	carmeB0647
Carg24942	ClCG05G001670	Watermelon (Charleston Gray)	carwcgB0630
Carg24942	CSPI03G08920	Wild cucumber (PI 183967)	carcpiB0677
Carg24942	Cucsa.258240	Cucumber (Gy14) v1	carcgyB0723
Carg24942	CmaCh06G010910	Cucurbita maxima (Rimu)	carcmaB0919
Carg24942	CmaCh14G020240	Cucurbita maxima (Rimu)	carcmaB0918
Carg24942	CmoCh06G011170	Cucurbita moschata (Rifu)	carcmoB0892
Carg24942	CmoCh14G020850	Cucurbita moschata (Rifu)	carcmoB0891
Carg24942	Lsi05G020260	Bottle gourd (USVL1VR-Ls)	carlsiB592
Carg24942	Cp4.1LG03g16820	Cucurbita pepo (Zucchini)	carcpeB0922
Carg24942	Cp4.1LG08g01490	Cucurbita pepo (Zucchini)	carcpeB0923
Carg24942	CsGy3G009010	Cucumber (Gy14) v2	carcgybB0644
Carg24942	MELO3C006125.2	Melon (DHL92) v3.6.1	carmedB0657
Carg24942	Cla97C05G082070	Watermelon (97103) v2	carwmbB0676
Carg24942	Bhi01G000268	Wax gourd	carwgoB0763

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24942	Cucumber (Chinese Long) v3	carcucB0679