MELO3C006125T2 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C006125T2
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCleavage and polyadenylation specificity factor subunit 5
Locationchr6 : 1206923 .. 1212385 (-)
Sequence length1159
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGCCTGACATTTAAACAAATTAACCCGCAAAGCTCGCAAGAACTGATCGCGGGTCATCACCAAGGTTTCTTCTTCTTTACTTCTTCCCGGCCTTGCTCGGCAGGTGCAGAGTGAACACAGCCATGGTGACGTCGCCGGTGGTGAACACGTATCCACTTTCCAGCTATACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCTGTCGCTGATCGTCTTGCTCGCATGAAAGTCAAGTACTGCCAATTTTCTCGATTCCTTAAACCCTAATTTTTGTTGCTTTTTAACGTCTTAGGGATTTATTGTTCTTGAAAGTTAGGAACTCTGGCCGTTTCCTGTTGTGGATTCGTGGTCATTTTACGTTTGATGTGTATACCACTACATTGAATCGTGGGAAATGATGTATGTTTATGATTATACTAGGCCATTTGTTGGGAGATTTGATCTTAGAGTTTTATAAAATAACATGACACGAAGTATAGAACTGAGTTTGTAGCGTGTTTCTGATTTCAGGAAAACGACTGAGCCTGGTATGGAGGGCTTTTTTCCTTGGGGGGGGGGGGTAATAATGTCGTGAATTAAATTCTTCGAAACACAGTTTTGGATTAAAGTGTATTATGTATATCATATTCAAGCCGGTGCTTCATTGGCGAATTTAATGCATTCTTCTTGTTGTTTTTTATTTTTATTTTTTATATTCCATTTATTGGCTTTGGAGGAAGTTGAATGATTAACATGTACTGGTGTTTGGTTCACAGCTATATGAAGGAAGGCATGAGAACAAGTGTTGAAGCAATTCTGCTGGTTAGTATGTACCTTCTTCACGTTTCATCTTAATGTACTCAGGGCCGTGCTTTGTTATTTCTTTCTTTCTTTCTTTTTTTAAATAGCACTTAAATAGATCATTAGAACGTAGGGTTACTAGCTGGATGTCAGGGTATATGTCTCTTTTTCTTATAAAAAAAATGAATACACTTTAACATGCTGAAGTTCTGTTTCTTATATAAAAGAAACATGTTGAATCCTTTATTCTCCTATTTTTTCTTTACCTGAGTGGTACACATTGAATAGAAAGTCAAGGATTACTAGAAGTCTAAATTGCAACATTGATCATTGTCATCTTTACCAAAAGTAAGCATCCGATGAAATATTTGTATATTTTAACATGGGATCTCCCCGCTTCTATTTGCTTCCTACTGGAAAATTTTGACGCTTAGGGATGCCTCATTCTCTCTAAAGCTGGTAGGGTGGCCCTTGCCCGACCCAATCCCTCCCCAATAGCTTCCCTTGATATCACTTTTCTTTCCTAAGAGCTCCCAAGAACATTACAATTTCTATGGAAATATTTAACAAAGATCGTGTGGGATGGTGGTGTAATGGTAGTTACGAGTATAATAGTAACTTAGTTATATGAGCTTGGACAACACCCCCAATCGCCCTTGGGGTTTGGGGGTGGGCTCCCTTGAACATTGAAATACCTCTCTTCTCACCAAATGGATTTGGAGATTTACTCAAGACAAGAGTTCGTTCTGGCACAAGGTTATTTCTAGCATTTTTGTGTCAAACTCATGGGTTGGATGGTTGCTGACTTAAGAAACGAAAAAAAGAAACAAGCCTTGAATGGATATTTTAGGAATTTCCCCTTCTTTGCTTGTTTTTCCAAATTCAAGGCAAGTTATGGTAGGAACATTCGCCTTTGGCATGATATTTGGGTCAATCAAGATCCTCTGAAAGACTACTTTTCTGACATGCACGCTGTATCTTTTAAAAAGGAGCCCAATGTCTTTGATTCTTGGCACGACAATTACCAGGTGTGTGGCTATGGCCTTAAATAGGGCTTTTAGATTGTGAGATGTATAGTTTATCATTATTATTATTTTTCTATTTTTATATCTACGAGTGTTTGGGCCAGCTCATGCACATGTCAATTATTCTCAAATCATAGATAGGTGGTTCCACACCCTGGTTGTACTAATATCTACACACACTAAAAAAATTATAGGTAGGTGGCCAACATGAAATAAACTTGTGATCCCTTAGCCCTTCAGCTCTTTTATGTTCCTTCATCTACCACTCGATCAACCCATGATGGTTGATTGTGAGATGGATAGTTGTGTTGGCCTTGTGGCAAACCTTAACTCCATTTAGCTAGGAGAGGGTGTGGATTAATTCTTTGGTACCTTGAAGGCTTTGGTATATACTCTAGTAATTCGACCTTTCAAAACCTTGCTACTAAGTGTCCTAGGGCCAATACAACTCTAACAAGCAGAATTTGGAAGCCTAAATCCCTGAAAAAGATCAAAATCCTTGGTTTTTAGAAGTCTAAATATTGACGACAAGCTTCAAAGAAAATTTAGAAGGCTGTCTCCTATGCCTTTGAGTTGTAGGATGTGCTTGCATATGGTGGAAAACCCGGATCAACTTTTCCTCAATTGTTTAACTTTGTCTCAAGATGGTGGAGTTACTTGGTTGGGATTTAGGTGTCTTCTTGTTTCCCTAAGGAAGTGGATGATTGGCTTATGGAAGGTATTCACACGTGTAACTTGAAAGGAAAAGCCAAGTTTTTCGGAGGTGGCCACTAGGGGGAAAGCATCAATCATTTCAATTGGCATCAGTTTTGGCCTCAATCAGTTTTGTTCGAATTAATGAGAACTGTACTGTGCTAAGTGGAATGCTGGATATGATTACAGCCTACAACCAGGTTTTTCTAGTCGTTAACATAATAAGAAACGCCATCAAGATTAATCAATTGTAATATGCTGATGATATCTCTATTTAATGTGCCTACTATAATGCTGATGTTGAAGAATCTGAGTAAGGTGCTGTACCATTTGAAGCCAGCATTAATCTGGACTGTTTGCTGTTATCTCAGTCGTGCTTCAGTCCCTTGTTGCCAAGCTGGAGATTGACTAGGACTTCGATTCCTTGTGATGTAGAAATATGGATTCAATCAGGGAGGTGAAATGCAACTAGGAGAGATAATACAATCAATTGGAAATGGAGGGTCTCTAGAAGCTCGATTTTAAAAGAAATCTGTTGAATGCTGAAATACAGGGGGCAAGTGGCCTGTGGCTGGCAGGCAGCTTGACCTTTCAAATTTTGATAAGAAAGAAACATGTTGATGAATCAAAAGGAGCCCAGAAACAGGAGGGTGAGCAGTCCAATCCCAAAGCTAAAGCAGTTTGCAGAATAGGACATCAATTATACAAGCCACACTATGATTACAACAAACATCGCTCTTAGGGTATATTGCAGGGGATTAACATGCAGGATGCTACCCCACTTTGCACCCCTTAGACTTATTTTTTAAGATACAATAGTTTCTCCAGCCTATAATTTCAAAACCGTGGTTTCAATAGAATTAGACAAGAGATTTCTAGCTTTCTGCCTTTTTTTTTTTTTGAGTTGGGCACTGAATGTTTCTTAGTCATAAACATTCTCCTTGGTGCAATTTAGTAACTGATATTCAACAGTGGCATCACTTTATCTTTTCTTATTTTCCCCTTTCTATTCCACAGGTGCAAGAACATAAACATCCCCACATTCTACTATTGCAAATAGGCAATACCTTTTGCAAGCTCCCTGGAGGACGGTTGAAGCCAGGAGAAAATGGTAACATTTTGTGTACAATTGAAGCCCCGGACATTCCATTGAGTAAAATCTCTCTCTCATGTTTATTTTAACATCTGCAGAAATTGAAGGTTTAAAGAGGAAGCTCACAAGCAAACTGGGTGCAAACTCGCCCTCACTCCAGCCTGATTGGCAGGTTCAAATCATTTCTTCTATTTTTATGTTCAAATCTAACTAATGAAACTATATATGTTCCTACGAGGAATTAGCTTCTTCATTTTTAATTTCCTGCAGATTGGTGAATGTGTGGCGATTTGGTGGAGACCAAACTTTGAAACTGTCATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGTATGTGGACACCCTCCCACTACAGTTTTTTTTTGGGTGGTAACTTTGATCAAAGTTTAAATGATAGATATTTCTGGAAAACTTATAATAAAGAAAAGTTACTTAAATTAATAAACTAAACATTTTACACTTCTCAAATAAATTAGAAAGGTTTATTGTTTATATTATGTAATGCACATCAACATTTTGTTACTTTAAATATGTTTCATCAATTTTTTTATTGCTATAGTGGAAATGTTGTTTTGCCCCCTATGTATTGAGCTCTCGATCATGTGTATGGAAATTTAACACACTGACTTTGATAGGGAAGAATATAGGTATCATATATATATATTAATACGTATCTTTCTTTTTTAAATGGATTCTGCTTGTTGCTTTTTTCGACCTTCATTGTGTGAGGATTGTAGAAAATTCCCATAGTTCATTATACAAGCTGATCTACGGCCTCCCTATTCTCCCGTTCCTTCCATCTTATTTCAATTAGGATTGTTCAGAGAGCACCAATCCTATTAAAAATAAGCTTTTTATCTTTTCTTTATACTTGACTCTTACCGAATACTTTCTTTTTCCATTTCCATACGGAAAAAGATAAAATCTTAATCAAGGTTTTGGATGATCCAGGAATGCAAAAAACTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCCAAAAATTTGAAGCTGCTTGCAGTTCCCTTGTTTGAGCTCTATGACAATGTGCAGGTATGTTACATTTTTTCTTAGTATAAACAAATTTAGTGCCTATTGATTAATTTTATCGTATTGGACAATGTGGAAAACCTGTTGATCTATAAGCAATTAGTGTGTGGTGAGTATGTGGTCTGGTTGATATCAAGGGAAAAATAAATTATAGATTGATTTTCTGGATGCTCGATGAAAATGATAGTTCCTGTGAATCCCATTAGCCTTTTGTCATGCTATCTATAAGCTAAATAATAGTTTTTGGTTTTTTGCACTTGATCACAGAGATATGGACCAGTTATCTCGACGATACCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGGTTACAGTACAAGAGCCCCTTAAATTTGTAGCAGGAATTGACTTCGATTTGCTTGAGATAGTTAGAAAAGAAACTTAGAGGACATTATCAACCTTGCTTGAGATAGATTAGCATACTTGTGATAGACTTTCTTGTTCTTGACCTTTTTGTCGATGTGTTTGCGAGGCAAAATTATGTTGCTTGTAACAAGATTCAACTGAGTTTGTGTATCATTTTAGCACAATTAAAGTTTTAGAAGTGTAATGTATGTCTATCGAATCAATTCTTAAAAGCCAAAAGCAAGATTGCTAAATGGTTATTGGCATGATCTTCTTGAGATGTAGGAGGTTCGAACCCGCGTCCCCAGACGTTTTGGTTTCCAGCTTCCGAGACGATGATAGTATTAGCTCTTTGTATCTCTAGTTTAATGCTATTTCAGTCATTCTTGTGGGATAAC

mRNA sequence

ATCGCCTGACATTTAAACAAATTAACCCGCAAAGCTCGCAAGAACTGATCGCGGGTCATCACCAAGGTTTCTTCTTCTTTACTTCTTCCCGGCCTTGCTCGGCAGGTGCAGAGTGAACACAGCCATGGTGACGTCGCCGGTGGTGAACACGTATCCACTTTCCAGCTATACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCTGTCGCTGATCGTCTTGCTCGCATGAAACTATATGAAGGAAGGCATGAGAACAAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAACATCCCCACATTCTACTATTGCAAATAGGCAATACCTTTTGCAAGCTCCCTGGAGGACGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAGCTCACAAGCAAACTGGGTGCAAACTCGCCCTCACTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCGATTTGGTGGAGACCAAACTTTGAAACTGTCATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGAATGCAAAAAACTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCCAAAAATTTGAAGCTGCTTGCAGTTCCCTTGTTTGAGCTCTATGACAATGTGCAGAGATATGGACCAGTTATCTCGACGATACCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGGTTACAGTACAAGAGCCCCTTAAATTTGTAGCAGGAATTGACTTCGATTTGCTTGAGATAGTTAGAAAAGAAACTTAGAGGACATTATCAACCTTGCTTGAGATAGATTAGCATACTTGTGATAGACTTTCTTGTTCTTGACCTTTTTGTCGATGTGTTTGCGAGGCAAAATTATGTTGCTTGTAACAAGATTCAACTGAGTTTGTGTATCATTTTAGCACAATTAAAGTTTTAGAAGTGTAATGTATGTCTATCGAATCAATTCTTAAAAGCCAAAAGCAAGATTGCTAAATGGTTATTGGCATGATCTTCTTGAGATGTAGGAGGTTCGAACCCGCGTCCCCAGACGTTTTGGTTTCCAGCTTCCGAGACGATGATAGTATTAGCTCTTTGTATCTCTAGTTTAATGCTATTTCAGTCATTCTTGTGGGATAAC

Coding sequence (CDS)

ATGAAGGAAGGCATGAGAACAAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAACATCCCCACATTCTACTATTGCAAATAGGCAATACCTTTTGCAAGCTCCCTGGAGGACGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAGCTCACAAGCAAACTGGGTGCAAACTCGCCCTCACTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCGATTTGGTGGAGACCAAACTTTGAAACTGTCATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGAATGCAAAAAACTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCCAAAAATTTGAAGCTGCTTGCAGTTCCCTTGTTTGAGCTCTATGACAATGTGCAGAGATATGGACCAGTTATCTCGACGATACCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA

Protein sequence

MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT*
Homology
[Close]
BLAST of MELO3C006125T2 vs. Swiss-Prot
Match: CFIS2_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 4.6e-82
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVE ILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG 
Sbjct: 42  MKEGMRTSVEGILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGG 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NS +L PDW +GECVA WWRPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKN
Sbjct: 102 NSAALVPDWTVGECVATWWRPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRF FNMI++
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFHFNMISS 200

[Close]
BLAST of MELO3C006125T2 vs. Swiss-Prot
Match: CPSF5_XENLA (Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.8e-52
Identity = 96/153 (62.75%), Postives = 112/153 (73.20%), Query Frame = 1 

Query: 2   KEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGAN 61
           K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG  
Sbjct: 73  KIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQ 132

Query: 62  SPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNL 121
              +Q DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN 
Sbjct: 133 D-GVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNY 192

Query: 122 KLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 155
           KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct: 193 KLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224

[Close]
BLAST of MELO3C006125T2 vs. Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.8e-52
Identity = 97/153 (63.40%), Postives = 112/153 (73.20%), Query Frame = 1 

Query: 2   KEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGAN 61
           K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG  
Sbjct: 73  KIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQ 132

Query: 62  SPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNL 121
              LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN 
Sbjct: 133 DGVLQ-DWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNY 192

Query: 122 KLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 155
           KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct: 193 KLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224

[Close]
BLAST of MELO3C006125T2 vs. Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.8e-52
Identity = 97/153 (63.40%), Postives = 112/153 (73.20%), Query Frame = 1 

Query: 2   KEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGAN 61
           K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG  
Sbjct: 73  KIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQ 132

Query: 62  SPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNL 121
              LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN 
Sbjct: 133 DGVLQ-DWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNY 192

Query: 122 KLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 155
           KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct: 193 KLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224

[Close]
BLAST of MELO3C006125T2 vs. Swiss-Prot
Match: CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.8e-52
Identity = 97/153 (63.40%), Postives = 112/153 (73.20%), Query Frame = 1 

Query: 2   KEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGAN 61
           K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG  
Sbjct: 73  KIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQ 132

Query: 62  SPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNL 121
              LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN 
Sbjct: 133 DGVLQ-DWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNY 192

Query: 122 KLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF 155
           KL+A PLFELYDN   YGP+IS++PQ LSRF F
Sbjct: 193 KLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224

[Close]
BLAST of MELO3C006125T2 vs. TrEMBL
Match: A0A0A0L8Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 7.9e-89
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA
Sbjct: 42  MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN
Sbjct: 102 NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of MELO3C006125T2 vs. TrEMBL
Match: B9R9C7_RICCO (Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_1496400 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 9.7e-87
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA
Sbjct: 42  MKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NSP+L PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKN
Sbjct: 102 NSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of MELO3C006125T2 vs. TrEMBL
Match: A0A0D2MX37_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.2e-86
Identity = 153/159 (96.23%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA
Sbjct: 42  MKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NSP+L PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKN
Sbjct: 102 NSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of MELO3C006125T2 vs. TrEMBL
Match: A0A061G0V3_THECC (Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN=TCM_015155 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.2e-86
Identity = 153/159 (96.23%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA
Sbjct: 42  MKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NSP+L PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKN
Sbjct: 102 NSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of MELO3C006125T2 vs. TrEMBL
Match: V4U7E9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 3.7e-86
Identity = 153/158 (96.84%), Postives = 156/158 (98.73%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA
Sbjct: 42  MKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NSP+L PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKN
Sbjct: 102 NSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT 159
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT 199

[Close]
BLAST of MELO3C006125T2 vs. TAIR10
Match: AT4G25550.1 (AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit)

HSP 1 Score: 305.1 bits (780), Expect = 2.6e-83
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVE ILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG 
Sbjct: 42  MKEGMRTSVEGILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGG 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NS +L PDW +GECVA WWRPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKN
Sbjct: 102 NSAALVPDWTVGECVATWWRPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRF FNMI++
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFHFNMISS 200

[Close]
BLAST of MELO3C006125T2 vs. TAIR10
Match: AT4G29820.1 (AT4G29820.1 homolog of CFIM-25)

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-52
Identity = 92/154 (59.74%), Postives = 117/154 (75.97%), Query Frame = 1 

Query: 4   GMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP 63
           G+RT VEA+LLV+  KHPH+LLLQ  N+  KLPGGRL+PGE++IEGLKRKL SKL  N  
Sbjct: 67  GLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNEN 126

Query: 64  SLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKL 123
                +++GEC+ +WWRPNFET+MYP+ PP+I  PKEC KLF+V L   + F VPKN KL
Sbjct: 127 VGVSGYEVGECIGMWWRPNFETLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKL 186

Query: 124 LAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI 158
           LAVPL +L++N + YGP++S IP+ LS+F FNM+
Sbjct: 187 LAVPLCQLHENEKTYGPIMSQIPKLLSKFSFNMM 220

[Close]
BLAST of MELO3C006125T2 vs. NCBI nr
Match: gi|449432171|ref|XP_004133873.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 1.1e-88
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA
Sbjct: 42  MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN
Sbjct: 102 NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of MELO3C006125T2 vs. NCBI nr
Match: gi|255539475|ref|XP_002510802.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ricinus communis])

HSP 1 Score: 327.4 bits (838), Expect = 1.4e-86
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA
Sbjct: 42  MKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NSP+L PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKN
Sbjct: 102 NSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of MELO3C006125T2 vs. NCBI nr
Match: gi|743857123|ref|XP_011030097.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2-like isoform X1 [Populus euphratica])

HSP 1 Score: 326.2 bits (835), Expect = 3.1e-86
Identity = 153/159 (96.23%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA
Sbjct: 44  MKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 103

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NSP+L PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKL++VHLSEREYFAVPKN
Sbjct: 104 NSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLYLVHLSEREYFAVPKN 163

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Sbjct: 164 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 202

[Close]
BLAST of MELO3C006125T2 vs. NCBI nr
Match: gi|590672648|ref|XP_007038670.1| (Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao])

HSP 1 Score: 326.2 bits (835), Expect = 3.1e-86
Identity = 153/159 (96.23%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA
Sbjct: 42  MKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NSP+L PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKN
Sbjct: 102 NSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 200

[Close]
BLAST of MELO3C006125T2 vs. NCBI nr
Match: gi|823149430|ref|XP_012474578.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Gossypium raimondii])

HSP 1 Score: 326.2 bits (835), Expect = 3.1e-86
Identity = 153/159 (96.23%), Postives = 157/159 (98.74%), Query Frame = 1 

Query: 1   MKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 60
           MKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA
Sbjct: 42  MKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGA 101

Query: 61  NSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKN 120
           NSP+L PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKN
Sbjct: 102 NSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKN 161

Query: 121 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 160
           LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Sbjct: 162 LKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 200

The following BLAST results are available for this feature:
BLAST of MELO3C006125T2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CFIS2_ARATH4.6e-8288.68Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE... [more]
CPSF5_XENLA3.8e-5262.75Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=c... [more]
CPSF5_BOVIN3.8e-5263.40Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT2... [more]
CPSF5_HUMAN3.8e-5263.40Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUD... [more]
CPSF5_MOUSE3.8e-5263.40Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nud... [more]
BLAST of MELO3C006125T2 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8Y2_CUCSA7.9e-89100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1[more]
B9R9C7_RICCO9.7e-8796.86Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_... [more]
A0A0D2MX37_GOSRA2.2e-8696.23Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1[more]
A0A061G0V3_THECC2.2e-8696.23Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN... [more]
V4U7E9_9ROSI3.7e-8696.84Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1[more]
BLAST of MELO3C006125T2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G25550.12.6e-8388.68 Cleavage/polyadenylation specificity factor, 25kDa subunit[more]
AT4G29820.11.4e-5259.74 homolog of CFIM-25[more]
BLAST of MELO3C006125T2 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432171|ref|XP_004133873.1|1.1e-88100.00PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus][more]
gi|255539475|ref|XP_002510802.1|1.4e-8696.86PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ricinus communis][more]
gi|743857123|ref|XP_011030097.1|3.1e-8696.23PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2-like isoform X1 [Populus... [more]
gi|590672648|ref|XP_007038670.1|3.1e-8696.23Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao][more]
gi|823149430|ref|XP_012474578.1|3.1e-8696.23PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000086NUDIX_hydrolase_dom
IPR015797NUDIX_hydrolase-like_dom_sf
IPR016706Cleav_polyA_spec_factor_su5
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003729mRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005849mRNA cleavage factor complex
Vocabulary: Biological Process
TermDefinition
GO:0006378mRNA polyadenylation
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006378 mRNA polyadenylation
cellular_component GO:0005849 mRNA cleavage factor complex
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003729 mRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C006125MELO3C006125gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C006125T2MELO3C006125T2-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C006125T2.cds6MELO3C006125T2.cds6CDS
MELO3C006125T2.cds5MELO3C006125T2.cds5CDS
MELO3C006125T2.cds4MELO3C006125T2.cds4CDS
MELO3C006125T2.cds3MELO3C006125T2.cds3CDS
MELO3C006125T2.cds2MELO3C006125T2.cds2CDS
MELO3C006125T2.cds1MELO3C006125T2.cds1CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000086NUDIX hydrolase domainPROFILEPS51462NUDIXcoord: 5..130
score: 8
IPR015797NUDIX hydrolase domain-likeGENE3DG3DSA:3.90.79.10coord: 5..63
score: 5.
IPR015797NUDIX hydrolase domain-likeunknownSSF55811Nudixcoord: 9..111
score: 2.2
IPR016706Cleavage/polyadenylation specificity factor subunit 5PIRPIRSF017888CPSF-25coord: 1..159
score: 7.6
IPR016706Cleavage/polyadenylation specificity factor subunit 5PANTHERPTHR13047PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNITcoord: 1..159
score: 5.0E
IPR016706Cleavage/polyadenylation specificity factor subunit 5PFAMPF13869NUDIX_2coord: 2..152
score: 1.9