MELO3C002397 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002397
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Mitochondrial 37S ribosomal protein S27
Location	chr12 : 23168907 .. 23171220 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCTCCGCTTATGATCTCTGGACGGCGGCGCCGATTACCTCCCGCACCGATCGTGCTTGTTAGTTTTGAACTTCCAATTTCTCTCTGTCATTGGTATGTCGTTTTTTGTCCTAATGTTTTGTATTTCATTTACTATAGTTCCTATTTCATATTTTGTTTAAGTAAACGAAATGAAAAGACGTAAACCTATACCTCTTTCTTTCCCTTCCTGCTGCATTCTCCCTCTTCCGTCGTTGAAGCTCCCAAATCCGACCAATTTTGGATGGGGTTCTAGATTTTTTTTTAATCAAAACAAGATTTCAAATCATTTTGGTTATGTTCGATATTGAACTATTTCTAGAATAGGGTTCCTCGAGGATTAAATGATGAACTTGAGGGATTCGGCATTGTGATGTGAATTACTGGTCAGTGAATTTTTCTTCTTGACTAAGCTTTGAACTTGTGAAAACCTGATCTAATTTAGGTTATTATTATAGTGATAAATGCATGTCGGGTTTATTTCTTATTTCTAGGATTATCTCTAGTAAGAACAGATTTGTGGGGTTGAGGCGGTCATTTTAATTGTTTTGCAATTTCTTATTGATAATGGGAATACTTTGGCTTACTCTCACAAGCTTTTTACAATTACCAAACTATTAGTTATCATACTGTGGTGTAGAGCAATTGAGAATGACCGGTTTTGATATGGACGCACTCTCAAGGAGTGTGAAGTGTTTGGTTTATGAGCTTTGAAGTTTCATTGTCGAGTCCGATGTTCAGTATGATTCCTCATTGATTTTCTTTACTTGATAATTCTTTATAATTAGGGATTGGGTACCAATTGTTTCATATTACTGGATACTTTATACTTCCAGGAAATTATTATTGCAGGTGAAACTTTCTATTCGAAGGTTCAACAAAAGGCTCATTTACATTCTTTCTCTTTGAAAGTCGTTTGTTATAAAAGTAAAAAAAGGCTCATTCACATTCTTGGTTATCTTAATCTGATAAGTAGTTTCTGTAAATTTGGTGTTGGATAGTACTAATTCATGAGCTGAAGCTTTTAATGAAAAACATGTTTTTGCATTATTTTCCTTGAAATTAAAATCCTCAACTGCTTCTTTGGTGAAATACGTAGGGAAAGCCAGAAGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAGTAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTAGCACAGTGGTATCCGTATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGTATGCTCTCTTTCTATTTGTGACTCTGCCATGAGCTAGACATATCATTTGAATAAATTTGGTGCATCATCTGTTGATTTTCTACGTCAATATACTAAGTGATATTAGGACAAGGAGTGATTTGTAGAAAGGCCATATCTGTTTATGCATGAGTGTTCTTGCATCTTTTGAAATTACAAATTTAACACTGTAGAAACGTTGCCTTCATGTGGGAAGTGGGAACTTGAGATATATACATACTACTGTCTACTAGTGAATTTTCTAGTTAGCAAAAGTAGGTTTCAATCAGCGGTGCATTGTTTGGAAAACCAAATCTGGGGTGTGGATTCAAACTTCCAAGCTCAAGAGAAATGTGCTTCTATACCTTATCTTAATGATGTTTTGAGAAGGAAATCAACATGACAGAGCAGTTCAGTAACTGAGTTTCAAATGTTTCTAGAGACATATTTCATTTTCTAACGAGCATACAGCTTATCTGGGTTTTTAGTTGCATATCGATTGGCAGAGCTTTTAAACTTTACGAACCGGTGGTTAATTTTATGATTTTTTCATTCAATTATCTTCTGTTTTTGCCCTGCATTTTTATCTTTCTGTTCATTGATTTGTCCCAGTATTCTGATTATCTTCCATCTACTTTGCTAGGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAACAAGTAGAGTCAATGACAGTGGAATTGTTCCTGCCAGTTATTTTTGTTGTTTTTTCTTAACAAAGTTTAGGTTATGGGCCAGTTTTCTCACGGTTGTAATGACTTCTATTCATCATTATGATCAATCTTTTCTACAAATGTGTTTGGTTCAAGAAAATTAATGCGTACTATACATGGAAAAGGCCAGAAATAAATTACATACAACGCTTAATCTGTGAATGAAAAGCATTGCTA

mRNA sequence

ATCCTCCGCTTATGATCTCTGGACGGCGGCGCCGATTACCTCCCGCACCGATCGTGCTTGTTAGTTTTGAACTTCCAATTTCTCTCTGTCATTGGGAAAGCCAGAAGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAGTAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTAGCACAGTGGTATCCGTATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAACAAGTAGAGTCAATGACAGTGGAATTGTTCCTGCCAGTTATTTTTGTTGTTTTTTCTTAACAAAGTTTAGGTTATGGGCCAGTTTTCTCACGGTTGTAATGACTTCTATTCATCATTATGATCAATCTTTTCTACAAATGTGTTTGGTTCAAGAAAATTAATGCGTACTATACATGGAAAAGGCCAGAAATAAATTACATACAACGCTTAATCTGTGAATGAAAAGCATTGCTA

Coding sequence (CDS)

ATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAGTAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTAGCACAGTGGTATCCGTATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAACAAGTAG

Protein sequence

MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK*

Homology

[Close]

BLAST of MELO3C002397 vs. TrEMBL
Match: A0A0A0LRA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056910 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.0e-49
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MELO3C002397 vs. TrEMBL
Match: D7T9R4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01090 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 9.4e-43
Identity = 87/102 (85.29%), Postives = 96/102 (94.12%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           M++  LKS+++AAV  GVTEARARIFGH+LNPTGQRS HK+LRKKLIG+KVAQWYPYDIK
Sbjct: 1   MSSLGLKSLLSAAVKGGVTEARARIFGHVLNPTGQRSPHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQG+RAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKRAAKRNK 102

[Close]

BLAST of MELO3C002397 vs. TrEMBL
Match: A0A061G2E2_THECC (Mitochondrial isoform 1 OS=Theobroma cacao GN=TCM_012548 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-41
Identity = 87/102 (85.29%), Postives = 91/102 (89.22%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           M+   LKSM+A+AV  GVTEARARIFGHILNPTGQRS HK LRKKLIG+KVA WYPYDIK
Sbjct: 1   MSAGGLKSMLASAVVAGVTEARARIFGHILNPTGQRSPHKTLRKKLIGEKVADWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
            DDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRA KRNK
Sbjct: 61  NDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAVKRNK 102

[Close]

BLAST of MELO3C002397 vs. TrEMBL
Match: M5XNS8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013771mg PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-41
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MAT  LKS+++ A++ GVTEARARIFGHILNPTGQ+S HK+LRKKLIG+KVAQWYPYDIK
Sbjct: 1   MATGGLKSLLSTAITTGVTEARARIFGHILNPTGQKSAHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDP +MA  EQERLSKLEMLKRRGKGPPKKG GRRAAKRNK
Sbjct: 61  KDDPKIMAMEEQERLSKLEMLKRRGKGPPKKGHGRRAAKRNK 102

[Close]

BLAST of MELO3C002397 vs. TrEMBL
Match: A0A0B2P5W5_GLYSO (Mitochondral 37S ribosomal protein S27 OS=Glycine soja GN=glysoja_021959 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.0e-41
Identity = 84/102 (82.35%), Postives = 95/102 (93.14%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MA+ SLK+M++AA++KGV E+RARIFGH LNPTGQ++ HKLLR KL G+KVAQWYP+DIK
Sbjct: 1   MASGSLKNMLSAAINKGVVESRARIFGHQLNPTGQQTPHKLLRMKLFGEKVAQWYPHDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MELO3C002397 vs. TAIR10
Match: AT5G44710.1 (AT5G44710.1 Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219))

HSP 1 Score: 170.6 bits (431), Expect = 4.9e-43
Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MA+ SLKS+I++AV +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKVA+WYPYDIK
Sbjct: 1   MASGSLKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
            +DP V+AR E+ER+SKLEMLKRR KGPPKKG G+RAAKRNK
Sbjct: 61  NEDPNVLAREEKERISKLEMLKRRDKGPPKKGHGKRAAKRNK 102

[Close]

BLAST of MELO3C002397 vs. NCBI nr
Match: gi|659067600|ref|XP_008440305.1| (PREDICTED: mitochondrial 37S ribosomal protein S27 [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MELO3C002397 vs. NCBI nr
Match: gi|449454784|ref|XP_004145134.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 5.7e-49
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MELO3C002397 vs. NCBI nr
Match: gi|694425017|ref|XP_009340264.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Pyrus x bretschneideri])

HSP 1 Score: 183.7 bits (465), Expect = 1.6e-43
Identity = 90/102 (88.24%), Postives = 94/102 (92.16%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MAT  LKSM+ AAVS GVTEARARIFGHILNPTGQRS HK+LRKKLIG+KVAQWYPYDIK
Sbjct: 1   MATGGLKSMLVAAVSTGVTEARARIFGHILNPTGQRSAHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDP +MA  EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPRIMAMEEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MELO3C002397 vs. NCBI nr
Match: gi|225423583|ref|XP_002273533.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Vitis vinifera])

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-42
Identity = 87/102 (85.29%), Postives = 96/102 (94.12%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           M++  LKS+++AAV  GVTEARARIFGH+LNPTGQRS HK+LRKKLIG+KVAQWYPYDIK
Sbjct: 1   MSSLGLKSLLSAAVKGGVTEARARIFGHVLNPTGQRSPHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQG+RAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKRAAKRNK 102

[Close]

BLAST of MELO3C002397 vs. NCBI nr
Match: gi|657982445|ref|XP_008383262.1| (PREDICTED: mitochondrial 37S ribosomal protein S27 [Malus domestica])

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-42
Identity = 89/102 (87.25%), Postives = 93/102 (91.18%), Query Frame = 1


Query: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MAT  LKSM+ AAVS GVTEARARIFGHILNPTGQRS HK+LRKKLIG+KVAQWYPYDIK
Sbjct: 1   MATGGLKSMLVAAVSTGVTEARARIFGHILNPTGQRSAHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDD  +MA  EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDRRIMAMEEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

The following BLAST results are available for this feature:

BLAST of MELO3C002397 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRA7_CUCSA	4.0e-49	98.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056910 PE=4 SV=1	[more]
D7T9R4_VITVI	9.4e-43	85.29	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01090 PE=4 SV=...	[more]
A0A061G2E2_THECC	1.0e-41	85.29	Mitochondrial isoform 1 OS=Theobroma cacao GN=TCM_012548 PE=4 SV=1	[more]
M5XNS8_PRUPE	1.4e-41	82.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013771mg PE=4 SV=1	[more]
A0A0B2P5W5_GLYSO	4.0e-41	82.35	Mitochondral 37S ribosomal protein S27 OS=Glycine soja GN=glysoja_021959 PE=4 SV...	[more]

BLAST of MELO3C002397 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G44710.1	4.9e-43	79.41	Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219)	[more]

BLAST of MELO3C002397 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067600\|ref\|XP_008440305.1\|	1.1e-49	100.00	PREDICTED: mitochondrial 37S ribosomal protein S27 [Cucumis melo]	[more]
gi\|449454784\|ref\|XP_004145134.1\|	5.7e-49	98.04	PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus]	[more]
gi\|694425017\|ref\|XP_009340264.1\|	1.6e-43	88.24	PREDICTED: 28S ribosomal protein S33, mitochondrial [Pyrus x bretschneideri]	[more]
gi\|225423583\|ref\|XP_002273533.1\|	1.4e-42	85.29	PREDICTED: 28S ribosomal protein S33, mitochondrial [Vitis vinifera]	[more]
gi\|657982445\|ref\|XP_008383262.1\|	1.8e-42	87.25	PREDICTED: mitochondrial 37S ribosomal protein S27 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013219	Ribosomal_S27/S33_mit

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0008150	biological_process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0018026	peptidyl-lysine monomethylation
biological_process	GO:0016925	protein sumoylation
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009508	plastid chromosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0000427	plastid-encoded plastid RNA polymerase complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016279	protein-lysine N-methyltransferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU50460	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002397T1	MELO3C002397T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU50460	MU50460	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013219	Ribosomal protein S27/S33, mitochondrial	PFAM	PF08293	MRP-S33	coord: 18..91 score: 9.2
None	No IPR available	PANTHER	PTHR13362	MITOCHONDRIAL RIBOSOMAL PROTEIN S33	coord: 3..102 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002397	Csa1G056910	Cucumber (Chinese Long) v2	cumeB027
MELO3C002397	Cla002656	Watermelon (97103) v1	mewmB149
MELO3C002397	ClCG03G004140	Watermelon (Charleston Gray)	mewcgB152
MELO3C002397	Cla97C03G055300	Watermelon (97103) v2	mewmbB156
MELO3C002397	BhiUN316G34	Wax gourd	mewgoB159
MELO3C002397	CSPI01G10000	Wild cucumber (PI 183967)	cpimeB024
MELO3C002397	Cucsa.134600	Cucumber (Gy14) v1	cgymeB217
MELO3C002397	CmaCh13G008390	Cucurbita maxima (Rimu)	cmameB197
MELO3C002397	CmoCh13G008670	Cucurbita moschata (Rifu)	cmomeB183
MELO3C002397	Lsi02G005360	Bottle gourd (USVL1VR-Ls)	lsimeB179
MELO3C002397	CsGy1G010030	Cucumber (Gy14) v2	cgybmeB022
MELO3C002397	Carg07631	Silver-seed gourd	carmeB0978
MELO3C002397	CsaV3_1G010070	Cucumber (Chinese Long) v3	cucmeB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002397	Cucurbita maxima (Rimu)	cmameB356
MELO3C002397	Cucurbita moschata (Rifu)	cmomeB356
MELO3C002397	Cucurbita pepo (Zucchini)	cpemeB026
MELO3C002397	Cucurbita pepo (Zucchini)	cpemeB470
MELO3C002397	Silver-seed gourd	carmeB0499