CsaV3_1G010070 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010070
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMitochondrial ribosomal protein S27
Locationchr1 : 6252847 .. 6254892 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTCTGGACGGCGGCGGCGATTACCTCCCCCTCCGATCTTGTTAGTTTCAAACTTTCAGTTTCTCTCTGTCACTGGTATGTATTTCATTTACTATTGTTTCTATTCCATATTTTCTTCAAGTAAACGAAATGAAAACAAGTCAACCTAAACCTCTTCCTTCGCTCACTTCCGCATTCTCAATCTTCTGCCGTTGCAGCTCCCAAATCCGACCAATTTTGGATGGGGTTCTAATTTTTTTTTAATCAAAACAAGATTTCAAATCATTTTGGTCTTATTCGATATTGAACTATTTCTAAAATAGGGTCCCTCAAGGATTCGAAGATGAATTTGAGGGATTCGGCATTGTGATGTGAATTACTGCTCAGTGAATTTTGCTTCTTGACTAAGCTTTGCACTTGTGAAAACCTGCATATACATCTAATTTACGTTCTATTCTTGTTATAGTGATAATTATCGCATGTCAGGTTTATTTCTTATTTCTAGGATTATCTCTAGTAAGAACAGATTTGTGGGCTTGAAGCAGTCATTTTAATTTTTTTGCAAATTCTTATTGGTAATGGGAATACTTTGGCTTCAATTCTTGTTCTATTCTCGTAAGCTTCTTACAATTACCAACTATTAATTATCATACTGTGTGTAGAGCAATTGAGAATGACCGGTTTTGATATGGATGCACTCTCAAGGAGTGTGAAGTGTTTGGTTTATGAGCTTTTAAGTTTCATTGTCGATCGAGTCCAATTTTCATATGATTCTTCATTGAATTGTTTCATATTTCTGGATACTTTATACTTACAGGAAATTATTATTGCAGGTGAGACTTTCTATTTGAAGGTTGAACAAAAGGCTCATTTACATTCTTTCTCCTTGAAAATCGTTTGTTTGTTATTAAAAAAAAAAAAGCTCATTCACATTCTTGGTTATCTTTATCTGATGAAGTAGTTTCTGTAAATTTGGTGTTGGAAAGTATTAATTCATCAGCTGAAGCTTCTAATGAACGACATGTTTTTGCATTATTTTCTTTGAAATTAAAATCCTCAGGTGCTTCTTTGTTGATATACGTAGGGAAAGCCAGAAGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGTATGCTCTCTTTCTATTTCTGACTCTGCCATGCGCTAGACATATCATTTGAATAAATTTCTTGTGCATCAGCTGTTGATTTTCTCCGTCAATATACTGAGTGATATTAGGACAAGCAGTGATTTGTAGAAAGGCCATATTTGTCCATGCATGAGTGTTCTTGCATGTTCTGAAATTACCAATTTAACACTCTAGAAACGTTGGCTTCATGTGGGAAATGGGAACTTGAGATATATACATACTACTGTCTACTAGTGAATTTTCTAGTTAGCAAAAGTAGGTTTCAATCAGCAGTGCATTGTTTAAAAAACCAAATCTGGGGTGTGGATTGAGACTTCCAAGCTTAAGGGAAATGTGCTTCTTTACCTTAATATCAGGATCTTAATGTTGTTTGGAGAAGGAAATCAACATGACGGAGCAGTTCAGTAACTGAGTTTCAAATGTTTCTAGAGACATATTACATTCTCTAACAAGCACAAAACTCATCTGGGTTTTTAGTTGCATATCGATTACCAAAGCTTTTAAACATTATGAGCCGGTGTTTAATTTTATGTCTTTTCATTCAATTTTCTTCTGTTTTTGCCCCGCATTTTTATCTTTCTGTGCATAGATTTGTCCCAATATTCTGATTATCTTCCATCTACTTTGCTAGGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG

mRNA sequence

ATGATCTCTGGACGGCGGCGGCGATTACCTCCCCCTCCGATCTTGTTAGTTTCAAACTTTCAGTTTCTCTCTGTCACTGAGCAATTGAGAATGACCGGTTTTGATATGGATGCACTCTCAAGGAGTGTGAAGTGTTTGGTTTATGAGCTTTTAAGTTTCATTGTCGATCGAGTCCAATTTTCATATGATTCTTCATTGAATTGTTTCATATTTCTGGATACTTTATACTTACAGGAAATTATTATTGCAGGTGAGACTTTCTATTTGAAGGGAAAGCCAGAAGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG

Coding sequence (CDS)

ATGATCTCTGGACGGCGGCGGCGATTACCTCCCCCTCCGATCTTGTTAGTTTCAAACTTTCAGTTTCTCTCTGTCACTGAGCAATTGAGAATGACCGGTTTTGATATGGATGCACTCTCAAGGAGTGTGAAGTGTTTGGTTTATGAGCTTTTAAGTTTCATTGTCGATCGAGTCCAATTTTCATATGATTCTTCATTGAATTGTTTCATATTTCTGGATACTTTATACTTACAGGAAATTATTATTGCAGGTGAGACTTTCTATTTGAAGGGAAAGCCAGAAGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG

Protein sequence

MISGRRRRLPPPPILLVSNFQFLSVTEQLRMTGFDMDALSRSVKCLVYELLSFIVDRVQFSYDSSLNCFIFLDTLYLQEIIIAGETFYLKGKPEERMATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Homology
[Close]
BLAST of CsaV3_1G010070 vs. NCBI nr
Match: XP_004145134.1 (PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus] >KGN64455.1 hypothetical protein Csa_1G056910 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 97  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 156
           MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 157 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of CsaV3_1G010070 vs. NCBI nr
Match: XP_008440305.1 (PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 1.2e-46
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 97  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 156
           MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 157 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of CsaV3_1G010070 vs. NCBI nr
Match: XP_023000758.1 (28S ribosomal protein S33, mitochondrial [Cucurbita maxima] >XP_023000759.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima])

HSP 1 Score: 192.2 bits (487), Expect = 1.7e-45
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 97  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 156
           MATNSLK MIAAAVNKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV++WYPYDIK
Sbjct: 1   MATNSLKGMIAAAVNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 60

Query: 157 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
           KDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of CsaV3_1G010070 vs. NCBI nr
Match: XP_022137168.1 (28S ribosomal protein S33, mitochondrial [Momordica charantia] >XP_022137169.1 28S ribosomal protein S33, mitochondrial [Momordica charantia])

HSP 1 Score: 191.0 bits (484), Expect = 3.8e-45
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 97  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 156
           MATNSLKS+IA AVN GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 157 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of CsaV3_1G010070 vs. NCBI nr
Match: XP_022923929.1 (28S ribosomal protein S33, mitochondrial [Cucurbita moschata] >XP_022923930.1 28S ribosomal protein S33, mitochondrial [Cucurbita moschata] >XP_023519632.1 28S ribosomal protein S33, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023519633.1 28S ribosomal protein S33, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.0 bits (484), Expect = 3.8e-45
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 97  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 156
           MATNSLK MIAAA+NKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV++WYPYDIK
Sbjct: 1   MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 60

Query: 157 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
           KDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of CsaV3_1G010070 vs. TAIR10
Match: AT5G44710.1 (Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219))

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-40
Identity = 80/102 (78.43%), Postives = 94/102 (92.16%), Query Frame = 0 

Query: 97  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 156
           MA+ SLKS+I++AV +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKV++WYPYDIK
Sbjct: 1   MASGSLKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDIK 60

Query: 157 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
            +DP V+AR E+ER+SKLEMLKRR KGPPKKG G+RAAKRNK
Sbjct: 61  NEDPNVLAREEKERISKLEMLKRRDKGPPKKGHGKRAAKRNK 102

[Close]
BLAST of CsaV3_1G010070 vs. Swiss-Prot
Match: sp|P53305|RT27_YEAST (Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RSM27 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.9e-04
Identity = 34/83 (40.96%), Postives = 44/83 (53.01%), Query Frame = 0 

Query: 114 VTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPY-DIKK--------DDPLVMA 173
           V E  A+IF    NP+G R+  K+L ++L G  V+ +Y   DI K         D   + 
Sbjct: 11  VAELSAKIFDQNFNPSGIRTGSKILNERLKGPSVASYYGNPDILKFRHLKTLYPDIEFVD 70

Query: 174 RLEQERLSKLEMLKRRGKGPPKK 188
             EQ RLS +E  KRRGKG PKK
Sbjct: 71  LEEQYRLSMVEAKKRRGKGAPKK 93

[Close]
BLAST of CsaV3_1G010070 vs. TrEMBL
Match: tr|A0A0A0LRA7|A0A0A0LRA7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056910 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.1e-48
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 97  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 156
           MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 157 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of CsaV3_1G010070 vs. TrEMBL
Match: tr|A0A1S3B0S3|A0A1S3B0S3_CUCME (28S ribosomal protein S33, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484788 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.7e-47
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 97  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 156
           MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 157 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of CsaV3_1G010070 vs. TrEMBL
Match: tr|A0A2P4HV34|A0A2P4HV34_QUESU (Mitochondrial 37s ribosomal protein s27 OS=Quercus suber OX=58331 GN=CFP56_45095 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 86/105 (81.90%), Postives = 97/105 (92.38%), Query Frame = 0 

Query: 94  EERMATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPY 153
           E RMAT SLK+++A AV +GVTEARARIFGHILNPTGQRS HKLLRKKLIG+KV++WYP+
Sbjct: 44  EVRMATGSLKNILATAVTRGVTEARARIFGHILNPTGQRSPHKLLRKKLIGEKVAEWYPH 103

Query: 154 DIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
           DI KDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQG++AAKR K
Sbjct: 104 DIMKDDPLIMARREQERLSKLEMLKRRGKGPPKKGQGKQAAKRKK 148

[Close]
BLAST of CsaV3_1G010070 vs. TrEMBL
Match: tr|D7T9R4|D7T9R4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g01090 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 0 

Query: 97  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 156
           M++  LKS+++AAV  GVTEARARIFGH+LNPTGQRS HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MSSLGLKSLLSAAVKGGVTEARARIFGHVLNPTGQRSPHKILRKKLIGEKVAQWYPYDIK 60

Query: 157 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQG+RAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKRAAKRNK 102

[Close]
BLAST of CsaV3_1G010070 vs. TrEMBL
Match: tr|A0A061G2E2|A0A061G2E2_THECC (Mitochondrial isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_012548 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.9e-39
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 0 

Query: 97  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 156
           M+   LKSM+A+AV  GVTEARARIFGHILNPTGQRS HK LRKKLIG+KV+ WYPYDIK
Sbjct: 1   MSAGGLKSMLASAVVAGVTEARARIFGHILNPTGQRSPHKTLRKKLIGEKVADWYPYDIK 60

Query: 157 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 199
            DDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRA KRNK
Sbjct: 61  NDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAVKRNK 102

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010070 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145134.11.4e-47100.00PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus] >KGN64455.... [more]
XP_008440305.11.2e-4698.04PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis melo][more]
XP_023000758.11.7e-4594.1228S ribosomal protein S33, mitochondrial [Cucurbita maxima] >XP_023000759.1 28S ... [more]
XP_022137168.13.8e-4595.1028S ribosomal protein S33, mitochondrial [Momordica charantia] >XP_022137169.1 2... [more]
XP_022923929.13.8e-4593.1428S ribosomal protein S33, mitochondrial [Cucurbita moschata] >XP_022923930.1 28... [more]
BLAST of CsaV3_1G010070 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G44710.11.2e-4078.43Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219)[more]
BLAST of CsaV3_1G010070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P53305|RT27_YEAST4.9e-0440.96Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC... [more]
BLAST of CsaV3_1G010070 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRA7|A0A0A0LRA7_CUCSA9.1e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056910 PE=4 SV=1[more]
tr|A0A1S3B0S3|A0A1S3B0S3_CUCME7.7e-4798.0428S ribosomal protein S33, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484788... [more]
tr|A0A2P4HV34|A0A2P4HV34_QUESU4.1e-4081.90Mitochondrial 37s ribosomal protein s27 OS=Quercus suber OX=58331 GN=CFP56_45095... [more]
tr|D7T9R4|D7T9R4_VITVI4.1e-4084.31Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g01090 PE=4 SV=... [more]
tr|A0A061G2E2|A0A061G2E2_THECC5.9e-3984.31Mitochondrial isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_012548 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013219Ribosomal_S27/S33_mit
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0016925 protein sumoylation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010070.1CsaV3_1G010070.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013219Ribosomal protein S27/S33, mitochondrialPFAMPF08293MRP-S33coord: 114..187
e-value: 5.2E-13
score: 48.9
IPR013219Ribosomal protein S27/S33, mitochondrialPANTHERPTHR13362MITOCHONDRIAL RIBOSOMAL PROTEIN S33coord: 104..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..198

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010070CSPI01G10000Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010070Cucsa.134600Cucumber (Gy14) v1cgycucB196
CsaV3_1G010070CmaCh13G008390Cucurbita maxima (Rimu)cmacucB0235
CsaV3_1G010070CsGy1G010030Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010070Carg07631Silver-seed gourdcarcucB1046
CsaV3_1G010070Cla002656Watermelon (97103) v1cucwmB013
CsaV3_1G010070MELO3C002397Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010070ClCG03G004140Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010070MELO3C002397.2Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010070Cla97C03G055300Watermelon (97103) v2cucwmbB030
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010070Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010070Cucurbita moschata (Rifu)cmocucB0222
CsaV3_1G010070Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010070Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010070Cucurbita pepo (Zucchini)cpecucB0634
CsaV3_1G010070Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010070Wax gourdcucwgoB029
CsaV3_1G010070Silver-seed gourdcarcucB0529