CSPI01G10000 (gene) Wild cucumber (PI 183967)

NameCSPI01G10000
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionMitochondral 37S ribosomal protein S27
LocationChr1 : 6238901 .. 6241210 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGAAGAAAGGGGTTTTAAGAAAAAATATCGACTCTATCCTCCGCTTATGATCTCTGGACGGCGGCGGCGATTACCTCCCCCTCCGATCTTGTTAGTTTCAAACTTTCAGTTTCTCTCTGTCACTGGTATGTATTTCATTTACTATTGTTTCTATTCCATATTTTCTTCAAGTAAACGAAATGAAAACAAGCAAACCTAAACCTCTTCCTTCACTCACTTCCGCATTCTCAATCTTCTGCCGTTGCAGCTCCCAAATCCGACCAATTTTGGATGGGGTTCTAATTTTTTTTTAATCAAAACAAGATTTCAAATCATTTTGGTCTTATTCGATATTGAACTATTTCTAAAATAGGGTCCCTCAAGGATTCGAAGATGAATTTGAGGGATTCGGCATTGTGATGTGAATTACTGCTCAGTGAATTTTGCTTCTTGACTAAGCTTTGCACTTGTGAAAACCTGCATATACATCTAATTTACGTTCTATTCTTGTTATAGTGATAATTATCGCATGTCAGGTTTATTTCTTATTTCTAGGATTATCTCTAGTAAGAACAGATTTGTGGGCTTGAAGCAGTCATTTTAATTTTTTTGCAAATTCTTATTGGTAATGGGAATACTTTGGCTTCAATTCTTGTTCTATTCTCGTAAGCTTCTTACAATTACCAACTATTAATTATCATACTGTGTGTAGAGCAATTGAGAATGACCGGTTTTGATATGGACGCACTCTCAAGGAGTGTGAAGTGTTTGGTTTATGAGCTTTTAAGTTTCATTGTCGATCGAGTCCAATTTTCATATGATTCTTCATTGAATTGTTTCATATTTCTGGATACTTTATACTTACAGGAAATTATTATTGCAGGTGAGACTTTCTATTTGAAGGTTGAACAAAAGGCTCATTTACATTCTTTCTCCTTGAAAATCGTTTGTTTGTTATTAAAAAAAAAAAGGCTCATTCACATTCTTGGTTATCTTTATCTGATGAAGTAGTTTCTGTAAATTTGGTGTTGGAAAGTATTAATTCATCAGCTGAAGCTTCTAATGAACGACATGTTTTTGCATTATTTTCTTTGAAATTAAAATCCTCAGGTGCCTCTTTGTTGATATACGTAGGGAAAGCCAGAAGAGAGAATGGCTACAAATAGCCTGAAGAGCATGATTGCCACAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGTATGCTCTCTTTCTATTTCTGACTCTGCCATGCGCTAGACATATCATTTGGATAAATTTCTTGTGCATCAGCTGTTGATTTTCTCCGTCAATATACTGAGTGATATTAGGACAAGCAGTGATTTGTAGAAAGGCCATATCTGTCCATGCATGAGTGTTCTTGCATCTTCTGAAATTACCAATTTAACACTCTAGAAACGTTGGCTTCATGTGGGAAGTGGGAACTTGAGATATATACATACTACTGTCTACTAGTGAATTTTCTAGTTAGCAAAAGTAGGTTTCAATCAGCAGTGCATTGTTTAAAAAACCAAATCTGGGGTGTGGATTGAGACTTCCAAGCTTAAGGGAAATGTGCTTCTATACCTTAATATCAGGATCTTAATGTTGTTTGGAGAAGGAAATCAACATGACGGAGCAGTTCAGTAACTGAGTTTCAAATGTTTCTAGAGACATATTACATTCTCTAACAAGCACAAAACTCATCTGGGTTTTTAGTTGCATATCGATTACCAAAGCTTTTAAACATTATGAGCCGGTGTTTAATTTTATGCTTTTCATTCAATTTTCTTCTGTTTTTGCCCCGCATTTTTATCTTTCTGTGCATAGATTTGTCCCAATATTCTGATTATCTTCCATCTACTTTGCTAGGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAGAGTCAATGACAGTGAAATTGTTCCTGTCAGTTATTTTTGTTGTTTTTCTTAACAAAGTTTAGGTTATGGGCCAGTTTCCTCACGGTTGTAATGACTTCTATTCATCATTATGATCAATGTTTTCAACAAATGTATTTGGTTCCAGCAAATTAATACGTACTATACATGGAAAATTCCAGAAATAAATCGCATAAAACACGTAATCTGTGAATGAAAAG

mRNA sequence

ATGGCTACAAATAGCCTGAAGAGCATGATTGCCACAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG

Coding sequence (CDS)

ATGGCTACAAATAGCCTGAAGAGCATGATTGCCACAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG
BLAST of CSPI01G10000 vs. TrEMBL
Match: A0A0A0LRA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056910 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-47
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKSMIA AVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of CSPI01G10000 vs. TrEMBL
Match: D7T9R4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01090 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.7e-40
Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           M++  LKS+++ AV  GVTEARARIFGH+LNPTGQRS HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MSSLGLKSLLSAAVKGGVTEARARIFGHVLNPTGQRSPHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQG+RAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKRAAKRNK 102

BLAST of CSPI01G10000 vs. TrEMBL
Match: M5XNS8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013771mg PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.8e-40
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MAT  LKS+++TA+  GVTEARARIFGHILNPTGQ+S HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MATGGLKSLLSTAITTGVTEARARIFGHILNPTGQKSAHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDP +MA  EQERLSKLEMLKRRGKGPPKKG GRRAAKRNK
Sbjct: 61  KDDPKIMAMEEQERLSKLEMLKRRGKGPPKKGHGRRAAKRNK 102

BLAST of CSPI01G10000 vs. TrEMBL
Match: A0A061G2E2_THECC (Mitochondrial isoform 1 OS=Theobroma cacao GN=TCM_012548 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.8e-39
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           M+   LKSM+A+AV  GVTEARARIFGHILNPTGQRS HK LRKKLIG+KV+ WYPYDIK
Sbjct: 1   MSAGGLKSMLASAVVAGVTEARARIFGHILNPTGQRSPHKTLRKKLIGEKVADWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
            DDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRA KRNK
Sbjct: 61  NDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAVKRNK 102

BLAST of CSPI01G10000 vs. TrEMBL
Match: A0A0B2P5W5_GLYSO (Mitochondral 37S ribosomal protein S27 OS=Glycine soja GN=glysoja_021959 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.3e-39
Identity = 83/102 (81.37%), Postives = 94/102 (92.16%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MA+ SLK+M++ A+NKGV E+RARIFGH LNPTGQ++ HKLLR KL G+KV+QWYP+DIK
Sbjct: 1   MASGSLKNMLSAAINKGVVESRARIFGHQLNPTGQQTPHKLLRMKLFGEKVAQWYPHDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of CSPI01G10000 vs. TAIR10
Match: AT5G44710.1 (AT5G44710.1 Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219))

HSP 1 Score: 162.9 bits (411), Expect = 1.0e-40
Identity = 80/102 (78.43%), Postives = 94/102 (92.16%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MA+ SLKS+I++AV +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKV++WYPYDIK
Sbjct: 1   MASGSLKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
            +DP V+AR E+ER+SKLEMLKRR KGPPKKG G+RAAKRNK
Sbjct: 61  NEDPNVLAREEKERISKLEMLKRRDKGPPKKGHGKRAAKRNK 102

BLAST of CSPI01G10000 vs. NCBI nr
Match: gi|449454784|ref|XP_004145134.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-47
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKSMIA AVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of CSPI01G10000 vs. NCBI nr
Match: gi|659067600|ref|XP_008440305.1| (PREDICTED: mitochondrial 37S ribosomal protein S27 [Cucumis melo])

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKSMIA AV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of CSPI01G10000 vs. NCBI nr
Match: gi|694425017|ref|XP_009340264.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Pyrus x bretschneideri])

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-40
Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MAT  LKSM+  AV+ GVTEARARIFGHILNPTGQRS HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MATGGLKSMLVAAVSTGVTEARARIFGHILNPTGQRSAHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDP +MA  EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPRIMAMEEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of CSPI01G10000 vs. NCBI nr
Match: gi|645233973|ref|XP_008223594.1| (PREDICTED: mitochondrial 37S ribosomal protein S27 [Prunus mume])

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-40
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MAT  LKS+++TA+  GVTEARARIFGHILNPTGQ+S HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MATGGLKSLLSTAITTGVTEARARIFGHILNPTGQKSAHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDP +MA  EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPQIMAMEEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of CSPI01G10000 vs. NCBI nr
Match: gi|225423583|ref|XP_002273533.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Vitis vinifera])

HSP 1 Score: 171.4 bits (433), Expect = 8.2e-40
Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = 1

Query: 1   MATNSLKSMIATAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           M++  LKS+++ AV  GVTEARARIFGH+LNPTGQRS HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MSSLGLKSLLSAAVKGGVTEARARIFGHVLNPTGQRSPHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQG+RAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKRAAKRNK 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LRA7_CUCSA1.3e-4799.02Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056910 PE=4 SV=1[more]
D7T9R4_VITVI5.7e-4083.33Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01090 PE=4 SV=... [more]
M5XNS8_PRUPE9.8e-4082.35Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013771mg PE=4 SV=1[more]
A0A061G2E2_THECC2.8e-3984.31Mitochondrial isoform 1 OS=Theobroma cacao GN=TCM_012548 PE=4 SV=1[more]
A0A0B2P5W5_GLYSO6.3e-3981.37Mitochondral 37S ribosomal protein S27 OS=Glycine soja GN=glysoja_021959 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT5G44710.11.0e-4078.43 Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219)[more]
Match NameE-valueIdentityDescription
gi|449454784|ref|XP_004145134.1|1.8e-4799.02PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus][more]
gi|659067600|ref|XP_008440305.1|1.5e-4697.06PREDICTED: mitochondrial 37S ribosomal protein S27 [Cucumis melo][more]
gi|694425017|ref|XP_009340264.1|2.2e-4085.29PREDICTED: 28S ribosomal protein S33, mitochondrial [Pyrus x bretschneideri][more]
gi|645233973|ref|XP_008223594.1|3.7e-4083.33PREDICTED: mitochondrial 37S ribosomal protein S27 [Prunus mume][more]
gi|225423583|ref|XP_002273533.1|8.2e-4083.33PREDICTED: 28S ribosomal protein S33, mitochondrial [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013219Ribosomal_S27/S33_mit
IPR013219Ribosomal_S27/S33_mit
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0016925 protein sumoylation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G10000.1CSPI01G10000.1mRNA
CSPI01G10000.2CSPI01G10000.2mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013219Ribosomal protein S27/S33, mitochondrialPFAMPF08293MRP-S33coord: 18..91
score: 2.4
NoneNo IPR availablePANTHERPTHR13362MITOCHONDRIAL RIBOSOMAL PROTEIN S33coord: 3..102
score: 1.4