Csa1G056910 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACCAAACCAAGATTTACTGAAGAAAGGGGTTTTAAGAAAAAATATCGACTCTATCCTCCGCTTATGATCTCTGGACGGCGGCGGCGATTACCTCCCCCTCCGATCTTGTTAGTTTCAAACTTTCAGTTTCTCTCTGTCACTGGTATGTATTTCATTTACTATTGTTTCTATTCCATATTTTCTTCAAGTAAACGAAATGAAAACAAGTCAACCTAAACCTCTTCCTTCGCTCACTTCCGCATTCTCAATCTTCTGCCGTTGCAGCTCCCAAATCCGACCAATTTTGGATGGGGTTCTAATTTTTTTTTAATCAAAACAAGATTTCAAATCATTTTGGTCTTATTCGATATTGAACTATTTCTAAAATAGGGTCCCTCAAGGATTCGAAGATGAATTTGAGGGATTCGGCATTGTGATGTGAATTACTGCTCAGTGAATTTTGCTTCTTGACTAAGCTTTGCACTTGTGAAAACCTGCATATACATCTAATTTACGTTCTATTCTTGTTATAGTGATAATTATCGCATGTCAGGTTTATTTCTTATTTCTAGGATTATCTCTAGTAAGAACAGATTTGTGGGCTTGAAGCAGTCATTTTAATTTTTTTGCAAATTCTTATTGGTAATGGGAATACTTTGGCTTCAATTCTTGTTCTATTCTCGTAAGCTTCTTACAATTACCAACTATTAATTATCATACTGTGTGTAGAGCAATTGAGAATGACCGGTTTTGATATGGATGCACTCTCAAGGAGTGTGAAGTGTTTGGTTTATGAGCTTTTAAGTTTCATTGTCGATCGAGTCCAATTTTCATATGATTCTTCATTGAATTGTTTCATATTTCTGGATACTTTATACTTACAGGAAATTATTATTGCAGGTGAGACTTTCTATTTGAAGGTTGAACAAAAGGCTCATTTACATTCTTTCTCCTTGAAAATCGTTTGTTTGTTATTAAAAAAAAAAAAGCTCATTCACATTCTTGGTTATCTTTATCTGATGAAGTAGTTTCTGTAAATTTGGTGTTGGAAAGTATTAATTCATCAGCTGAAGCTTCTAATGAACGACATGTTTTTGCATTATTTTCTTTGAAATTAAAATCCTCAGGTGCTTCTTTGTTGATATACGTAGGGAAAGCCAGAAGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGTATGCTCTCTTTCTATTTCTGACTCTGCCATGCGCTAGACATATCATTTGAATAAATTTCTTGTGCATCAGCTGTTGATTTTCTCCGTCAATATACTGAGTGATATTAGGACAAGCAGTGATTTGTAGAAAGGCCATATTTGTCCATGCATGAGTGTTCTTGCATGTTCTGAAATTACCAATTTAACACTCTAGAAACGTTGGCTTCATGTGGGAAATGGGAACTTGAGATATATACATACTACTGTCTACTAGTGAATTTTCTAGTTAGCAAAAGTAGGTTTCAATCAGCAGTGCATTGTTTAAAAAACCAAATCTGGGGTGTGGATTGAGACTTCCAAGCTTAAGGGAAATGTGCTTCTTTACCTTAATATCAGGATCTTAATGTTGTTTGGAGAAGGAAATCAACATGACGGAGCAGTTCAGTAACTGAGTTTCAAATGTTTCTAGAGACATATTACATTCTCTAACAAGCACAAAACTCATCTGGGTTTTTAGTTGCATATCGATTACCAAAGCTTTTAAACATTATGAGCCGGTGTTTAATTTTATGTCTTTTCATTCAATTTTCTTCTGTTTTTGCCCCGCATTTTTATCTTTCTGTGCATAGATTTGTCCCAATATTCTGATTATCTTCCATCTACTTTGCTAGGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAGAGTCAATGACAGTGGACTTGTTCCTGTCAGTTATTTTTGTTGTTTTTTCTTAACAAAGTTTAGGTTATGGGCCAGTTTCCTCACGGTTGTAATGACTTCTATTCATCATTATGATCAATGTTTTCAACAAATGTATTTGGTTCCAGCAAATTAATACGTACTATACATGGAAAATTCCAGAAATAAATCGCATAAAACACGTAATCTGTGAATGAAAAG ATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG ATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK*
BLAST of Csa1G056910 vs. TrEMBL
Match: A0A0A0LRA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056910 PE=4 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 4.7e-50 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
BLAST of Csa1G056910 vs. TrEMBL
Match: D7T9R4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01090 PE=4 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 2.1e-42 Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 1
BLAST of Csa1G056910 vs. TrEMBL
Match: A0A0B2P5W5_GLYSO (Mitochondral 37S ribosomal protein S27 OS=Glycine soja GN=glysoja_021959 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 2.3e-41 Identity = 84/102 (82.35%), Postives = 95/102 (93.14%), Query Frame = 1
BLAST of Csa1G056910 vs. TrEMBL
Match: A0A061G2E2_THECC (Mitochondrial isoform 1 OS=Theobroma cacao GN=TCM_012548 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 3.0e-41 Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 1
BLAST of Csa1G056910 vs. TrEMBL
Match: M5XNS8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013771mg PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 4.0e-41 Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = 1
BLAST of Csa1G056910 vs. TAIR10
Match: AT5G44710.1 (AT5G44710.1 Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219)) HSP 1 Score: 169.5 bits (428), Expect = 1.1e-42 Identity = 80/102 (78.43%), Postives = 92/102 (90.20%), Query Frame = 1
BLAST of Csa1G056910 vs. NCBI nr
Match: gi|449454784|ref|XP_004145134.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus]) HSP 1 Score: 204.9 bits (520), Expect = 6.7e-50 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1
BLAST of Csa1G056910 vs. NCBI nr
Match: gi|659067600|ref|XP_008440305.1| (PREDICTED: mitochondrial 37S ribosomal protein S27 [Cucumis melo]) HSP 1 Score: 201.8 bits (512), Expect = 5.7e-49 Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 1
BLAST of Csa1G056910 vs. NCBI nr
Match: gi|694425017|ref|XP_009340264.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Pyrus x bretschneideri]) HSP 1 Score: 181.4 bits (459), Expect = 7.9e-43 Identity = 88/102 (86.27%), Postives = 94/102 (92.16%), Query Frame = 1
BLAST of Csa1G056910 vs. NCBI nr
Match: gi|225423583|ref|XP_002273533.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Vitis vinifera]) HSP 1 Score: 179.5 bits (454), Expect = 3.0e-42 Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 1
BLAST of Csa1G056910 vs. NCBI nr
Match: gi|657982445|ref|XP_008383262.1| (PREDICTED: mitochondrial 37S ribosomal protein S27 [Malus domestica]) HSP 1 Score: 177.9 bits (450), Expect = 8.8e-42 Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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