Csa1G056910 (gene) Cucumber (Chinese Long) v2

NameCsa1G056910
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR013219 (Ribosomal protein S27/S33, mitochondrial)
LocationChr1 : 6219328 .. 6221655 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCAAACCAAGATTTACTGAAGAAAGGGGTTTTAAGAAAAAATATCGACTCTATCCTCCGCTTATGATCTCTGGACGGCGGCGGCGATTACCTCCCCCTCCGATCTTGTTAGTTTCAAACTTTCAGTTTCTCTCTGTCACTGGTATGTATTTCATTTACTATTGTTTCTATTCCATATTTTCTTCAAGTAAACGAAATGAAAACAAGTCAACCTAAACCTCTTCCTTCGCTCACTTCCGCATTCTCAATCTTCTGCCGTTGCAGCTCCCAAATCCGACCAATTTTGGATGGGGTTCTAATTTTTTTTTAATCAAAACAAGATTTCAAATCATTTTGGTCTTATTCGATATTGAACTATTTCTAAAATAGGGTCCCTCAAGGATTCGAAGATGAATTTGAGGGATTCGGCATTGTGATGTGAATTACTGCTCAGTGAATTTTGCTTCTTGACTAAGCTTTGCACTTGTGAAAACCTGCATATACATCTAATTTACGTTCTATTCTTGTTATAGTGATAATTATCGCATGTCAGGTTTATTTCTTATTTCTAGGATTATCTCTAGTAAGAACAGATTTGTGGGCTTGAAGCAGTCATTTTAATTTTTTTGCAAATTCTTATTGGTAATGGGAATACTTTGGCTTCAATTCTTGTTCTATTCTCGTAAGCTTCTTACAATTACCAACTATTAATTATCATACTGTGTGTAGAGCAATTGAGAATGACCGGTTTTGATATGGATGCACTCTCAAGGAGTGTGAAGTGTTTGGTTTATGAGCTTTTAAGTTTCATTGTCGATCGAGTCCAATTTTCATATGATTCTTCATTGAATTGTTTCATATTTCTGGATACTTTATACTTACAGGAAATTATTATTGCAGGTGAGACTTTCTATTTGAAGGTTGAACAAAAGGCTCATTTACATTCTTTCTCCTTGAAAATCGTTTGTTTGTTATTAAAAAAAAAAAAGCTCATTCACATTCTTGGTTATCTTTATCTGATGAAGTAGTTTCTGTAAATTTGGTGTTGGAAAGTATTAATTCATCAGCTGAAGCTTCTAATGAACGACATGTTTTTGCATTATTTTCTTTGAAATTAAAATCCTCAGGTGCTTCTTTGTTGATATACGTAGGGAAAGCCAGAAGAGAGAATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGTATGCTCTCTTTCTATTTCTGACTCTGCCATGCGCTAGACATATCATTTGAATAAATTTCTTGTGCATCAGCTGTTGATTTTCTCCGTCAATATACTGAGTGATATTAGGACAAGCAGTGATTTGTAGAAAGGCCATATTTGTCCATGCATGAGTGTTCTTGCATGTTCTGAAATTACCAATTTAACACTCTAGAAACGTTGGCTTCATGTGGGAAATGGGAACTTGAGATATATACATACTACTGTCTACTAGTGAATTTTCTAGTTAGCAAAAGTAGGTTTCAATCAGCAGTGCATTGTTTAAAAAACCAAATCTGGGGTGTGGATTGAGACTTCCAAGCTTAAGGGAAATGTGCTTCTTTACCTTAATATCAGGATCTTAATGTTGTTTGGAGAAGGAAATCAACATGACGGAGCAGTTCAGTAACTGAGTTTCAAATGTTTCTAGAGACATATTACATTCTCTAACAAGCACAAAACTCATCTGGGTTTTTAGTTGCATATCGATTACCAAAGCTTTTAAACATTATGAGCCGGTGTTTAATTTTATGTCTTTTCATTCAATTTTCTTCTGTTTTTGCCCCGCATTTTTATCTTTCTGTGCATAGATTTGTCCCAATATTCTGATTATCTTCCATCTACTTTGCTAGGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAGAGTCAATGACAGTGGACTTGTTCCTGTCAGTTATTTTTGTTGTTTTTTCTTAACAAAGTTTAGGTTATGGGCCAGTTTCCTCACGGTTGTAATGACTTCTATTCATCATTATGATCAATGTTTTCAACAAATGTATTTGGTTCCAGCAAATTAATACGTACTATACATGGAAAATTCCAGAAATAAATCGCATAAAACACGTAATCTGTGAATGAAAAG

mRNA sequence

ATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG

Coding sequence (CDS)

ATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTATCCCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAACAAGTAG

Protein sequence

MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK*
BLAST of Csa1G056910 vs. TrEMBL
Match: A0A0A0LRA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056910 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.7e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Csa1G056910 vs. TrEMBL
Match: D7T9R4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01090 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.1e-42
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           M++  LKS+++AAV  GVTEARARIFGH+LNPTGQRS HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MSSLGLKSLLSAAVKGGVTEARARIFGHVLNPTGQRSPHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQG+RAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKRAAKRNK 102

BLAST of Csa1G056910 vs. TrEMBL
Match: A0A0B2P5W5_GLYSO (Mitochondral 37S ribosomal protein S27 OS=Glycine soja GN=glysoja_021959 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-41
Identity = 84/102 (82.35%), Postives = 95/102 (93.14%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MA+ SLK+M++AA+NKGV E+RARIFGH LNPTGQ++ HKLLR KL G+KV+QWYP+DIK
Sbjct: 1   MASGSLKNMLSAAINKGVVESRARIFGHQLNPTGQQTPHKLLRMKLFGEKVAQWYPHDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Csa1G056910 vs. TrEMBL
Match: A0A061G2E2_THECC (Mitochondrial isoform 1 OS=Theobroma cacao GN=TCM_012548 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.0e-41
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           M+   LKSM+A+AV  GVTEARARIFGHILNPTGQRS HK LRKKLIG+KV+ WYPYDIK
Sbjct: 1   MSAGGLKSMLASAVVAGVTEARARIFGHILNPTGQRSPHKTLRKKLIGEKVADWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
            DDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRA KRNK
Sbjct: 61  NDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAVKRNK 102

BLAST of Csa1G056910 vs. TrEMBL
Match: M5XNS8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013771mg PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.0e-41
Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MAT  LKS+++ A+  GVTEARARIFGHILNPTGQ+S HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MATGGLKSLLSTAITTGVTEARARIFGHILNPTGQKSAHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDP +MA  EQERLSKLEMLKRRGKGPPKKG GRRAAKRNK
Sbjct: 61  KDDPKIMAMEEQERLSKLEMLKRRGKGPPKKGHGRRAAKRNK 102

BLAST of Csa1G056910 vs. TAIR10
Match: AT5G44710.1 (AT5G44710.1 Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219))

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-42
Identity = 80/102 (78.43%), Postives = 92/102 (90.20%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MA+ SLKS+I++AV +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKV++WYPYDIK
Sbjct: 1   MASGSLKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
            +DP V+AR E+ER+SKLEMLKRR KGPPKKG G+RAAKRNK
Sbjct: 61  NEDPNVLAREEKERISKLEMLKRRDKGPPKKGHGKRAAKRNK 102

BLAST of Csa1G056910 vs. NCBI nr
Match: gi|449454784|ref|XP_004145134.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 6.7e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Csa1G056910 vs. NCBI nr
Match: gi|659067600|ref|XP_008440305.1| (PREDICTED: mitochondrial 37S ribosomal protein S27 [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 5.7e-49
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Csa1G056910 vs. NCBI nr
Match: gi|694425017|ref|XP_009340264.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Pyrus x bretschneideri])

HSP 1 Score: 181.4 bits (459), Expect = 7.9e-43
Identity = 88/102 (86.27%), Postives = 94/102 (92.16%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MAT  LKSM+ AAV+ GVTEARARIFGHILNPTGQRS HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MATGGLKSMLVAAVSTGVTEARARIFGHILNPTGQRSAHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDP +MA  EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPRIMAMEEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Csa1G056910 vs. NCBI nr
Match: gi|225423583|ref|XP_002273533.1| (PREDICTED: 28S ribosomal protein S33, mitochondrial [Vitis vinifera])

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-42
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           M++  LKS+++AAV  GVTEARARIFGH+LNPTGQRS HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MSSLGLKSLLSAAVKGGVTEARARIFGHVLNPTGQRSPHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQG+RAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKRAAKRNK 102

BLAST of Csa1G056910 vs. NCBI nr
Match: gi|657982445|ref|XP_008383262.1| (PREDICTED: mitochondrial 37S ribosomal protein S27 [Malus domestica])

HSP 1 Score: 177.9 bits (450), Expect = 8.8e-42
Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 1

Query: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MAT  LKSM+ AAV+ GVTEARARIFGHILNPTGQRS HK+LRKKLIG+KV+QWYPYDIK
Sbjct: 1   MATGGLKSMLVAAVSTGVTEARARIFGHILNPTGQRSAHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDD  +MA  EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDRRIMAMEEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LRA7_CUCSA4.7e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G056910 PE=4 SV=1[more]
D7T9R4_VITVI2.1e-4284.31Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01090 PE=4 SV=... [more]
A0A0B2P5W5_GLYSO2.3e-4182.35Mitochondral 37S ribosomal protein S27 OS=Glycine soja GN=glysoja_021959 PE=4 SV... [more]
A0A061G2E2_THECC3.0e-4184.31Mitochondrial isoform 1 OS=Theobroma cacao GN=TCM_012548 PE=4 SV=1[more]
M5XNS8_PRUPE4.0e-4181.37Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013771mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G44710.11.1e-4278.43 Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219)[more]
Match NameE-valueIdentityDescription
gi|449454784|ref|XP_004145134.1|6.7e-50100.00PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus][more]
gi|659067600|ref|XP_008440305.1|5.7e-4998.04PREDICTED: mitochondrial 37S ribosomal protein S27 [Cucumis melo][more]
gi|694425017|ref|XP_009340264.1|7.9e-4386.27PREDICTED: 28S ribosomal protein S33, mitochondrial [Pyrus x bretschneideri][more]
gi|225423583|ref|XP_002273533.1|3.0e-4284.31PREDICTED: 28S ribosomal protein S33, mitochondrial [Vitis vinifera][more]
gi|657982445|ref|XP_008383262.1|8.8e-4285.29PREDICTED: mitochondrial 37S ribosomal protein S27 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013219Ribosomal_S27/S33_mit
IPR013219Ribosomal_S27/S33_mit
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0016925 protein sumoylation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU112559cucumber EST collection version 3.0transcribed_cluster
CU123835cucumber EST collection version 3.0transcribed_cluster
CU178150cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G056910.1Csa1G056910.1mRNA
Csa1G056910.2Csa1G056910.2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU178150CU178150transcribed_cluster
CU123835CU123835transcribed_cluster
CU112559CU112559transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013219Ribosomal protein S27/S33, mitochondrialPFAMPF08293MRP-S33coord: 18..91
score: 2.4
NoneNo IPR availablePANTHERPTHR13362MITOCHONDRIAL RIBOSOMAL PROTEIN S33coord: 3..102
score: 3.9
NoneNo IPR availablePANTHERPTHR13362:SF228S RIBOSOMAL PROTEIN S33, MITOCHONDRIALcoord: 3..102
score: 3.9