Cla97C03G055300 (gene) Watermelon (97103) v2

NameCla97C03G055300
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionmitochondrial 37S ribosomal protein S27-like
LocationCla97Chr03 : 4259252 .. 4260302 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTAATAGCCTGAAGAGTATGGTTGTCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGGTCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTAGCACAGTGGTATCCATATGATATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAACAAGAGTACACTCTCTTTCTATTTCTGACTTTGCAATGAGCTAGACATAACCATTTCAACGAAATTTTATGCATCAGATGTATATTTTCTCTGTCAATATACTGAGTGATATTAGGATAAGGAGTGATTTGTAGAAAGGCCATATGTGTTTAACATGGAAAATGGGGGGATAAGGCTTGTGCATGAGTTCTCCTGCATCTTTTGAAATCATAAATTTATGCTTTAGAAACGTACCTTCATGTGGGAAGTGGGAACTTGAGGTATACACACATTACTATGTGAATTTTCTGGTTAAAGAAAATAGGTTTCAATTCAACAGTGCATTCTTTTTTTTGGAAAAAAAAAAACAAATTTGGGGGTGTGGATTCAAATTTCCAAGCTCAAGGGAAATATGCTTTCTATACCTTAAGGTTAGGATCAATGCTATTTTGGAGGAGGTCAACATGAGAGTGCGGTTTAGTAACTGAGTTTCACATGTTTCTAGAGAGATGTTACCTTCTTTAATGAGGGCCACAGCTTATCTGGGTTTTTAGTTGCATGTCAATTACCAGAGCTTTTAAAAGGTACAAACTGGTGGTTAATTTTATATCTTGTTGTTGTTCTGTTTCTGCCCTGTAGTTGCTTTTAAAAGGTACAAACTGGTGGTTAATTTTATATCTTGTTGTTGTTCTGTTTCTGCCCTGTAGTTTATCTTTCTGTGCATAGATTTGTCCTAGTATTCTAATTTTCTGCCATCTACCTTGCTAGGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGTAGGCGTGCGGCCAAGCGCAACAAGTAG

mRNA sequence

ATGGCTACTAATAGCCTGAAGAGTATGGTTGTCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGGTCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTAGCACAGTGGTATCCATATGATATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGTAGGCGTGCGGCCAAGCGCAACAAGTAG

Coding sequence (CDS)

ATGGCTACTAATAGCCTGAAGAGTATGGTTGTCGCAGCAGTCAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGGTCTACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTAGCACAGTGGTATCCATATGATATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGTAGGCGTGCGGCCAAGCGCAACAAGTAG

Protein sequence

MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
BLAST of Cla97C03G055300 vs. NCBI nr
Match: XP_023000758.1 (28S ribosomal protein S33, mitochondrial [Cucurbita maxima] >XP_023000759.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima])

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLK M+ AAVNKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIK
Sbjct: 1   MATNSLKGMIAAAVNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Cla97C03G055300 vs. NCBI nr
Match: XP_004145134.1 (PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus] >KGN64455.1 hypothetical protein Csa_1G056910 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.9e-45
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKSM+ AAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Cla97C03G055300 vs. NCBI nr
Match: XP_008440305.1 (PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 3.3e-45
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKSM+ AAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Cla97C03G055300 vs. NCBI nr
Match: XP_022923929.1 (28S ribosomal protein S33, mitochondrial [Cucurbita moschata] >XP_022923930.1 28S ribosomal protein S33, mitochondrial [Cucurbita moschata] >XP_023519632.1 28S ribosomal protein S33, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023519633.1 28S ribosomal protein S33, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.3 bits (482), Expect = 3.3e-45
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLK M+ AA+NKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIK
Sbjct: 1   MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Cla97C03G055300 vs. NCBI nr
Match: XP_022137168.1 (28S ribosomal protein S33, mitochondrial [Momordica charantia] >XP_022137169.1 28S ribosomal protein S33, mitochondrial [Momordica charantia])

HSP 1 Score: 188.0 bits (476), Expect = 1.6e-44
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0

Query: 1   MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKS++  AVN GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Cla97C03G055300 vs. TrEMBL
Match: tr|A0A0A0LRA7|A0A0A0LRA7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056910 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-45
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKSM+ AAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Cla97C03G055300 vs. TrEMBL
Match: tr|A0A1S3B0S3|A0A1S3B0S3_CUCME (28S ribosomal protein S33, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484788 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.2e-45
Identity = 98/102 (96.08%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKSM+ AAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

BLAST of Cla97C03G055300 vs. TrEMBL
Match: tr|D7T9R4|D7T9R4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g01090 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.8e-40
Identity = 88/102 (86.27%), Postives = 96/102 (94.12%), Query Frame = 0

Query: 1   MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           M++  LKS++ AAV  GVTEARARIFGH+LNPTGQRS HK+LRKKLIG+KVAQWYPYDIK
Sbjct: 1   MSSLGLKSLLSAAVKGGVTEARARIFGHVLNPTGQRSPHKILRKKLIGEKVAQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQG+RAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKRAAKRNK 102

BLAST of Cla97C03G055300 vs. TrEMBL
Match: tr|A0A1U8AFN8|A0A1U8AFN8_NELNU (uncharacterized protein LOC104599760 OS=Nelumbo nucifera OX=4432 GN=LOC104599760 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-39
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 0

Query: 3   TNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKD 62
           + SL+SM++AA   GVTEARARIFGH+LNPTGQRS HK+LRKKLIG+KVAQWYPYDIKKD
Sbjct: 2   SGSLRSMLIAAAINGVTEARARIFGHVLNPTGQRSPHKVLRKKLIGEKVAQWYPYDIKKD 61

Query: 63  DPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           DPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRA KR+K
Sbjct: 62  DPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAVKRSK 101

BLAST of Cla97C03G055300 vs. TrEMBL
Match: tr|A0A061G2E2|A0A061G2E2_THECC (Mitochondrial isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_012548 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.2e-39
Identity = 87/102 (85.29%), Postives = 91/102 (89.22%), Query Frame = 0

Query: 1   MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           M+   LKSM+ +AV  GVTEARARIFGHILNPTGQRS HK LRKKLIG+KVA WYPYDIK
Sbjct: 1   MSAGGLKSMLASAVVAGVTEARARIFGHILNPTGQRSPHKTLRKKLIGEKVADWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
            DDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRA KRNK
Sbjct: 61  NDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAVKRNK 102

BLAST of Cla97C03G055300 vs. Swiss-Prot
Match: sp|P53305|RT27_YEAST (Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RSM27 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.6e-05
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 0

Query: 18 VTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLVMA 77
          V E  A+IF    NP+G R+  K+L ++L G  VA +Y   DI K         D   + 
Sbjct: 11 VAELSAKIFDQNFNPSGIRTGSKILNERLKGPSVASYYGNPDILKFRHLKTLYPDIEFVD 70

Query: 78 RQEQERLSKLEMLKRRGKGPPKK 92
           +EQ RLS +E  KRRGKG PKK
Sbjct: 71 LEEQYRLSMVEAKKRRGKGAPKK 93

BLAST of Cla97C03G055300 vs. TAIR10
Match: AT5G44710.1 (Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219))

HSP 1 Score: 162.5 bits (410), Expect = 1.3e-40
Identity = 80/102 (78.43%), Postives = 94/102 (92.16%), Query Frame = 0

Query: 1   MATNSLKSMVVAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MA+ SLKS++ +AV +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKVA+WYPYDIK
Sbjct: 1   MASGSLKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
            +DP V+AR+E+ER+SKLEMLKRR KGPPKKG G+RAAKRNK
Sbjct: 61  NEDPNVLAREEKERISKLEMLKRRDKGPPKKGHGKRAAKRNK 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023000758.11.5e-4594.1228S ribosomal protein S33, mitochondrial [Cucurbita maxima] >XP_023000759.1 28S ... [more]
XP_004145134.11.9e-4596.08PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis sativus] >KGN64455.... [more]
XP_008440305.13.3e-4596.08PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis melo][more]
XP_022923929.13.3e-4593.1428S ribosomal protein S33, mitochondrial [Cucurbita moschata] >XP_022923930.1 28... [more]
XP_022137168.11.6e-4493.1428S ribosomal protein S33, mitochondrial [Momordica charantia] >XP_022137169.1 2... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0LRA7|A0A0A0LRA7_CUCSA1.3e-4596.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056910 PE=4 SV=1[more]
tr|A0A1S3B0S3|A0A1S3B0S3_CUCME2.2e-4596.0828S ribosomal protein S33, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484788... [more]
tr|D7T9R4|D7T9R4_VITVI2.8e-4086.27Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g01090 PE=4 SV=... [more]
tr|A0A1U8AFN8|A0A1U8AFN8_NELNU1.0e-3986.00uncharacterized protein LOC104599760 OS=Nelumbo nucifera OX=4432 GN=LOC104599760... [more]
tr|A0A061G2E2|A0A061G2E2_THECC5.2e-3985.29Mitochondrial isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_012548 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
sp|P53305|RT27_YEAST6.6e-0542.17Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC... [more]
Match NameE-valueIdentityDescription
AT5G44710.11.3e-4078.43Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219)[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013219Ribosomal_S27/S33_mit
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0016925 protein sumoylation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G055300.1Cla97C03G055300.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013219Ribosomal protein S27/S33, mitochondrialPFAMPF08293MRP-S33coord: 18..91
e-value: 7.3E-15
score: 54.9
IPR013219Ribosomal protein S27/S33, mitochondrialPANTHERPTHR13362MITOCHONDRIAL RIBOSOMAL PROTEIN S33coord: 9..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..102

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G055300Silver-seed gourdcarwmbB0517
Cla97C03G055300Cucurbita maxima (Rimu)cmawmbB417
Cla97C03G055300Cucurbita moschata (Rifu)cmowmbB211
Cla97C03G055300Cucurbita moschata (Rifu)cmowmbB394
Cla97C03G055300Bottle gourd (USVL1VR-Ls)lsiwmbB176
Cla97C03G055300Wax gourdwgowmbB448