LsiUNG001050 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	LsiUNG001050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr00 : 2790304 .. 2791400 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAAAAGAAAAAACAGAGAGACGAAAGGAATTAAAGGGGATGGCGAAGACAATGCTGCACGTTGGTAGTGGCGGTGGAATTGGTAAGAAGAGACTCATCAATCGGAGGAAGAAGAAAAGGATTCACAAAGTGATCGATTATCTGTTATCAGATTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATTAATTCTCATGCCTCACCCACAAGAGGTTTCTTCCACTTCTCTTCTTCATACACCATTCATTAATTTACCTCTAAAATTCGTTTTTTTTTTTTTTTTTATAATTAGGGATCGAAATTAGAGAACGCACAAAAGATAACCGGAGTTTGGTGCAGAAGATTCAGGATTATTTGAAATCTGATGTCTACATGTATGCTTCTCTGCTTGCACCACATTCCTTCAGACTCAGACTCAGAGGTATACAATTTCAATTTCAATTCAATTAAATTAAATCTTAATAGACTGTGAATCTGTTCAATCCTGTGTGTTTATTGTTTGAAATTGAATATTGATCTTGAAAAACAGAGAAGGGAGAAACAGGGGGTGTTGGGTACGTAAAGAGGGTAAGTAGGGAAGTTTCAAGGACAACATGTAATAGAGGAGAGGAGGAAGTAATGGTTATAAGTGATTTTGTGGAAGCAACGGTTAATAGCACACCAAGGGAATCATCTCACCGCTCCATCTTTCCTAATTCTCCATCTTTATCAATTTCAGGTCTAACTTTCTAAACATTACTTCTGCTTTATATATATATATATATCTGGGTTGATTTCTCCATTATTTACGCATTCTACGTTCTTTTGGTTGGAGGTTTCTTAACAATTTATTTATTTTTGGTTGGGTTTGTATAGGTGAGCGTGACCCAAAGATGAGGAGGATTGTTGTTGATTGAGCTTCGGTCGGATTTTCCTTTAGAATTAGTTGTGGAAGTTGTATAGTAGTAGATAATGCTTTACAGGCAAAACCAACTTGGGATTTGGGAGAATATGGTGTGCTATTATGTAAACTTTGTTAAGTATGTATTAAAAAGATTTGGATGTATCATATAATTAGATCTTAACTTGAAGTTGAAGCTGTATTAATC

mRNA sequence

CGCAAAAGAAAAAACAGAGAGACGAAAGGAATTAAAGGGGATGGCGAAGACAATGCTGCACGTTGGTAGTGGCGGTGGAATTGGTAAGAAGAGACTCATCAATCGGAGGAAGAAGAAAAGGATTCACAAAGTGATCGATTATCTGTTATCAGATTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATTAATTCTCATGCCTCACCCACAAGAGGGATCGAAATTAGAGAACGCACAAAAGATAACCGGAGTTTGGTGCAGAAGATTCAGGATTATTTGAAATCTGATGTCTACATGTATGCTTCTCTGCTTGCACCACATTCCTTCAGACTCAGACTCAGAGAGAAGGGAGAAACAGGGGGTGTTGGGTACGTAAAGAGGGTAAGTAGGGAAGTTTCAAGGACAACATGTAATAGAGGAGAGGAGGAAGTAATGGTTATAAGTGATTTTGTGGAAGCAACGGTTAATAGCACACCAAGGGAATCATCTCACCGCTCCATCTTTCCTAATTCTCCATCTTTATCAATTTCAGGTGAGCGTGACCCAAAGATGAGGAGGATTGTTGTTGATTGAGCTTCGGTCGGATTTTCCTTTAGAATTAGTTGTGGAAGTTGTATAGTAGTAGATAATGCTTTACAGGCAAAACCAACTTGGGATTTGGGAGAATATGGTGTGCTATTATGTAAACTTTGTTAAGTATGTATTAAAAAGATTTGGATGTATCATATAATTAGATCTTAACTTGAAGTTGAAGCTGTATTAATC

Coding sequence (CDS)

ATGGCGAAGACAATGCTGCACGTTGGTAGTGGCGGTGGAATTGGTAAGAAGAGACTCATCAATCGGAGGAAGAAGAAAAGGATTCACAAAGTGATCGATTATCTGTTATCAGATTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATTAATTCTCATGCCTCACCCACAAGAGGGATCGAAATTAGAGAACGCACAAAAGATAACCGGAGTTTGGTGCAGAAGATTCAGGATTATTTGAAATCTGATGTCTACATGTATGCTTCTCTGCTTGCACCACATTCCTTCAGACTCAGACTCAGAGAGAAGGGAGAAACAGGGGGTGTTGGGTACGTAAAGAGGGTAAGTAGGGAAGTTTCAAGGACAACATGTAATAGAGGAGAGGAGGAAGTAATGGTTATAAGTGATTTTGTGGAAGCAACGGTTAATAGCACACCAAGGGAATCATCTCACCGCTCCATCTTTCCTAATTCTCCATCTTTATCAATTTCAGGTGAGCGTGACCCAAAGATGAGGAGGATTGTTGTTGATTGA

Protein sequence

MAKTMLHVGSGGGIGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPINSHASPTRGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRVSREVSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSLSISGERDPKMRRIVVD

Homology

[Close]

BLAST of LsiUNG001050 vs. TrEMBL
Match: A0A0A0LTL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294060 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.1e-33
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   MAKTMLHVGSGGGIGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHASPT 60
           MAK M+HV   GGIGKKR I R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +PT
Sbjct: 1   MAKKMVHVS--GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPT 60

Query: 61  RGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLR 102
           RGIEIR RTKD+R+LV+K QDYL+SD YMYASL+ P S RLR
Sbjct: 61  RGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 100

[Close]

BLAST of LsiUNG001050 vs. TrEMBL
Match: F6HYP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.8e-12
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 1


Query: 8  VGSGGGIGKKRLINRRKKKR-IHKVIDYLLSDCYLFAPLLISPSPINSHASPTRGIEIRE 67
          V SG G+  KR + +  KK+ + KV+DYL SD Y+FAPL+  P+  NS A+P  G+E+ +
Sbjct: 5  VASGSGVQNKRPMKKNNKKKWLQKVLDYLKSDSYMFAPLIFHPT--NSAAAP--GVEMTK 64

Query: 68 RTK-DNRSLVQKIQDYLKSDVYMYASLL 94
            K DNR+L++K+++YLKSD YMYA L+
Sbjct: 65 PIKEDNRTLLEKVEEYLKSDNYMYAPLI 88

[Close]

BLAST of LsiUNG001050 vs. TrEMBL
Match: M5XIK5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016338mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 1


Query: 14 IGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISP-----SPINSHASPTRGIEIRERT 73
          + KKR I R KKK + KVID+L+S+ Y+FAPL+  P     SP+ + AS T G+E R+  
Sbjct: 5  VQKKRPIKRNKKKLLKKVIDFLISNSYMFAPLISHPPHGFSSPMKTRASIT-GVEGRKPI 64

Query: 74 K-DNRSLVQKIQDYLKSDVYMYASLLA 95
          K +N+ L++K+ DYLKSD YMYA LLA
Sbjct: 65 KGNNKRLLKKVGDYLKSDSYMYAPLLA 90

[Close]

BLAST of LsiUNG001050 vs. TrEMBL
Match: A0A0A0LZ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294070 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 47/77 (61.04%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 104 EKGETGGVGYVKRVSREVSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSL 163
           EKGETG V YVK+VS EV            +V+SDFVEATVN TP     RSI+ NSPSL
Sbjct: 2   EKGETGRVEYVKKVSGEV------------VVMSDFVEATVNGTP----DRSIYSNSPSL 61

Query: 164 SISGERDPK-MRRIVVD 180
           ++SGERDPK  RRIVVD
Sbjct: 62  TLSGERDPKARRRIVVD 62

[Close]

BLAST of LsiUNG001050 vs. TrEMBL
Match: W9RKH4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023018 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 59/157 (37.58%), Postives = 84/157 (53.50%), Query Frame = 1


Query: 13  GIGKKRLINRRKKKR---IHKVIDYLLSDCYLFAPLLISPSPINSHASPTRGIEIRERTK 72
           G+ KKRL N+R KK+   + KV+DYL  DC LFAPL  S S   SH      IE++E  K
Sbjct: 11  GVQKKRLKNKRNKKKYNLLDKVLDYLKFDCCLFAPLTSSNSDFRSHK-----IEMKENAK 70

Query: 73  DN-RSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRVSREVSRTTCNR 132
           +N + LV+K+ +YL SD YMYA L+ P    L +  KG      Y K V+ EV+R + + 
Sbjct: 71  ENKKKLVKKVGEYLISDSYMYAPLVVPPK-PLWVPTKGPQ---RYTKHVTVEVARRSISL 130

Query: 133 GEEEVMV-ISDFVEATVNSTPRESSHRSIFPNSPSLS 165
            E   +      + A  +   +E+   +I+ N  S S
Sbjct: 131 KETTRLANKQSIIPARQSLAHKETVKHAIYQNCRSSS 158

[Close]

BLAST of LsiUNG001050 vs. TAIR10
Match: AT5G57790.1 (AT5G57790.1 unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-07
Identity = 43/151 (28.48%), Postives = 74/151 (49.01%), Query Frame = 1


Query: 14  IGKKRLINRRKKKR-IHKVIDYLLSDCYLFAPL----------LISPSPINSHASPTRGI 73
           +G ++ + R+K +R +  ++ YL SD YLFAPL          + +P P NS  S    I
Sbjct: 9   LGARKKLKRKKCRRLVRSIVTYLKSDTYLFAPLFSNFPPLTTEIDTPPPSNSKPSTVDDI 68

Query: 74  EIR-------ERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVK 133
            +        E+    R + +K+++YLKSD YMY+ +++    +L    KG+   +    
Sbjct: 69  SMEGFESLGIEKLIKKRRMSEKVKEYLKSDCYMYSPMISSPP-KLGSSVKGK---MQITM 128

Query: 134 RVSREVSRTTCNRGEEEVMVI-SDFVEATVN 146
            VS ++S TT    +     + SD  E T++
Sbjct: 129 EVSTKLSTTTMKEDDSGYRNLRSDIAEQTLH 155

[Close]

BLAST of LsiUNG001050 vs. NCBI nr
Match: gi|659086186|ref|XP_008443802.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 4.1e-55
Identity = 129/183 (70.49%), Postives = 143/183 (78.14%), Query Frame = 1


Query: 1   MAKTMLHVGSGGG--IGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHAS 60
           MAK M+HVG GGG  IGKKRLI R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRV 120
           PTRGIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S   RLREKGETG V Y K+V
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS--PRLREKGETGRVEYAKKV 120

Query: 121 SREVSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSLSISGERDPKM-RRI 180
           S             EV+V+S+FVEATV+ TP+    RSI+ NSPSL++SGERDPK+ RRI
Sbjct: 121 S------------GEVVVMSNFVEATVSGTPQ----RSIYSNSPSLTLSGERDPKVRRRI 165

[Close]

BLAST of LsiUNG001050 vs. NCBI nr
Match: gi|659086188|ref|XP_008443803.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 6.6e-45
Identity = 108/152 (71.05%), Postives = 117/152 (76.97%), Query Frame = 1


Query: 1   MAKTMLHVGSGGG--IGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHAS 60
           MAK M+HVG GGG  IGKKRLI R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRV 120
           PTRGIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S   RLREKGETG V Y K+V
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS--PRLREKGETGRVEYAKKV 120

Query: 121 SREVSRTTCNRGEEEVMVISDFVEATVNSTPR 150
           S             EV+V+S+FVEATV+ T R
Sbjct: 121 S------------GEVVVMSNFVEATVSVTQR 138

[Close]

BLAST of LsiUNG001050 vs. NCBI nr
Match: gi|659086190|ref|XP_008443804.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X3 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-36
Identity = 85/104 (81.73%), Postives = 89/104 (85.58%), Query Frame = 1


Query: 1   MAKTMLHVGSGGG--IGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHAS 60
           MAK M+HVG GGG  IGKKRLI R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLR 102
           PTRGIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S RLR
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKSPRLR 104

[Close]

BLAST of LsiUNG001050 vs. NCBI nr
Match: gi|700210179|gb|KGN65275.1| (hypothetical protein Csa_1G294060 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 4.4e-33
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   MAKTMLHVGSGGGIGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHASPT 60
           MAK M+HV   GGIGKKR I R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +PT
Sbjct: 1   MAKKMVHVS--GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPT 60

Query: 61  RGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLR 102
           RGIEIR RTKD+R+LV+K QDYL+SD YMYASL+ P S RLR
Sbjct: 61  RGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 100

[Close]

BLAST of LsiUNG001050 vs. NCBI nr
Match: gi|778660341|ref|XP_011656059.1| (PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 4.4e-33
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   MAKTMLHVGSGGGIGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHASPT 60
           MAK M+HV   GGIGKKR I R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +PT
Sbjct: 1   MAKKMVHVS--GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPT 60

Query: 61  RGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLR 102
           RGIEIR RTKD+R+LV+K QDYL+SD YMYASL+ P S RLR
Sbjct: 61  RGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 100

The following BLAST results are available for this feature:

BLAST of LsiUNG001050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of LsiUNG001050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTL8_CUCSA	3.1e-33	77.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294060 PE=4 SV=1	[more]
F6HYP2_VITVI	8.8e-12	48.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=...	[more]
M5XIK5_PRUPE	2.6e-11	51.72	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016338mg PE=4 SV=1	[more]
A0A0A0LZ66_CUCSA	9.7e-11	61.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294070 PE=4 SV=1	[more]
W9RKH4_9ROSA	9.7e-11	37.58	Uncharacterized protein OS=Morus notabilis GN=L484_023018 PE=4 SV=1	[more]

BLAST of LsiUNG001050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57790.1	1.5e-07	28.48	unknown protein	[more]

BLAST of LsiUNG001050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086186\|ref\|XP_008443802.1\|	4.1e-55	70.49	PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo]	[more]
gi\|659086188\|ref\|XP_008443803.1\|	6.6e-45	71.05	PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo]	[more]
gi\|659086190\|ref\|XP_008443804.1\|	1.5e-36	81.73	PREDICTED: uncharacterized protein LOC103487306 isoform X3 [Cucumis melo]	[more]
gi\|700210179\|gb\|KGN65275.1\|	4.4e-33	77.45	hypothetical protein Csa_1G294060 [Cucumis sativus]	[more]
gi\|778660341\|ref\|XP_011656059.1\|	4.4e-33	77.45	PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
LsiUNG001050.1	LsiUNG001050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
LsiUNG001050	Csa1G294060	Cucumber (Chinese Long) v2	culsiB000
LsiUNG001050	CSPI01G18250	Wild cucumber (PI 183967)	cpilsiB000
LsiUNG001050	CmaCh11G004270	Cucurbita maxima (Rimu)	cmalsiB082
LsiUNG001050	CmoCh11G004270	Cucurbita moschata (Rifu)	cmolsiB071
LsiUNG001050	Cla018779	Watermelon (97103) v1	lsiwmB006
LsiUNG001050	ClCG06G012880	Watermelon (Charleston Gray)	lsiwcgB004
LsiUNG001050	MELO3C029631.2	Melon (DHL92) v3.6.1	lsimedB001
LsiUNG001050	Cla97C06G122160	Watermelon (97103) v2	lsiwmbB003
LsiUNG001050	Bhi02G000632	Wax gourd	lsiwgoB005
LsiUNG001050	Cp4.1LG04g12690	Cucurbita pepo (Zucchini)	cpelsiB519
LsiUNG001050	CsGy1G018310	Cucumber (Gy14) v2	cgyblsiB001
LsiUNG001050	Carg14056	Silver-seed gourd	carlsiB455
LsiUNG001050	CsaV3_1G029450	Cucumber (Chinese Long) v3	cuclsiB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
LsiUNG001050	Cucumber (Gy14) v1	cgylsiB056
LsiUNG001050	Cucurbita maxima (Rimu)	cmalsiB045
LsiUNG001050	Cucurbita moschata (Rifu)	cmolsiB030
LsiUNG001050	Cucurbita pepo (Zucchini)	cpelsiB280
LsiUNG001050	Melon (DHL92) v3.5.1	lsimeB001