Cla018779 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018779
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 22000342 .. 22001094 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAAAATGGTGGATGTTAGTGGCGGCGGCGGGATTGGTAAGAAGAGACTCATCAAGCGGAGCAAGAAGAAAAGCATTCACAAAGTGATCCATTATCTGTTATCGGATTGCTACTTATATGCACCTATCCTCATTTCTCCTTCACCCATTAATTCTCATGCCGCACCCACAAGAGGTTTCTTCCACTTCTCTTTTCCTGCACCATTTTATTAACTTTCTCTAAAATGGGTTTCTTAATTAGGGATTGAAATTAGAGAACGCACAAAAGACAACCGGAGTTTGGTGAAGAAGATTCAGGATTATTTGAAATCTGATTGTTACATGTATGCTTCTTTGCTTGCACCACATTCCCACAGACTCAGACTCAGAGGTATATAATTTCAATTTCCATAGAGTTAAATTAACTAATAAATTCTCAATTTGTTCAATCGTGTGTGCTTCTTGTTTGGAGTTTAAGTTTAATTTTAATTTTGTAAAATAGAGAAGGGAGAAACAGGGCGTGTTGGGTACGTAAAGAAGGTAAGTAAGGAAGTAATGGTTGTGTCTGATTTTGTGGAAGCAACGGTTGAATCATCCAAGCGCTCCATCTATCCTAATTCTCCATCTATATCAATTTCAGGTCCAATTTTCTAAACATTATTTCAAGCTTTTATTTTCAATTGTTATGTTTTATATTTATTTATTTATTTTTGGTTGGTTTTTATAGGTGAGCATGACCCAAAGATGAGGAGGATTGTTGTTGATTAA

mRNA sequence

ATGGCGAAGAAAATGGTGGATGTTAGTGGCGGCGGCGGGATTGGTAAGAAGAGACTCATCAAGCGGAGCAAGAAGAAAAGCATTCACAAAGTGATCCATTATCTGTTATCGGATTGCTACTTATATGCACCTATCCTCATTTCTCCTTCACCCATTAATTCTCATGCCGCACCCACAAGAGGGATTGAAATTAGAGAACGCACAAAAGACAACCGGAGTTTGGTGAAGAAGATTCAGGATTATTTGAAATCTGATTGTTACATGTATGCTTCTTTGCTTGCACCACATTCCCACAGACTCAGACTCAGAGAGAAGGGAGAAACAGGGCGTGTTGGGTACGTAAAGAAGGTAAGTAAGGAAGTAATGGTTGTGTCTGATTTTGTGGAAGCAACGGTTGAATCATCCAAGCGCTCCATCTATCCTAATTCTCCATCTATATCAATTTCAGGTGAGCATGACCCAAAGATGAGGAGGATTGTTGTTGATTAA

Coding sequence (CDS)

ATGGCGAAGAAAATGGTGGATGTTAGTGGCGGCGGCGGGATTGGTAAGAAGAGACTCATCAAGCGGAGCAAGAAGAAAAGCATTCACAAAGTGATCCATTATCTGTTATCGGATTGCTACTTATATGCACCTATCCTCATTTCTCCTTCACCCATTAATTCTCATGCCGCACCCACAAGAGGGATTGAAATTAGAGAACGCACAAAAGACAACCGGAGTTTGGTGAAGAAGATTCAGGATTATTTGAAATCTGATTGTTACATGTATGCTTCTTTGCTTGCACCACATTCCCACAGACTCAGACTCAGAGAGAAGGGAGAAACAGGGCGTGTTGGGTACGTAAAGAAGGTAAGTAAGGAAGTAATGGTTGTGTCTGATTTTGTGGAAGCAACGGTTGAATCATCCAAGCGCTCCATCTATCCTAATTCTCCATCTATATCAATTTCAGGTGAGCATGACCCAAAGATGAGGAGGATTGTTGTTGATTAA

Protein sequence

MAKKMVDVSGGGGIGKKRLIKRSKKKSIHKVIHYLLSDCYLYAPILISPSPINSHAAPTRGIEIRERTKDNRSLVKKIQDYLKSDCYMYASLLAPHSHRLRLREKGETGRVGYVKKVSKEVMVVSDFVEATVESSKRSIYPNSPSISISGEHDPKMRRIVVD

Homology

[Close]

BLAST of Cla018779 vs. TrEMBL
Match: A0A0A0LTL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294060 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-35
Identity = 82/102 (80.39%), Postives = 88/102 (86.27%), Query Frame = 1


Query: 1   MAKKMVDVSGGGGIGKKRLIKRSKKKSIHKVIHYLLSDCYLYAPILISPSPI-NSHAAPT 60
           MAKKMV VSGG  IGKKR IKRSKKK IHKVI YLLSDCYL+AP+LISPSPI NSH  PT
Sbjct: 1   MAKKMVHVSGG--IGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPT 60

Query: 61  RGIEIRERTKDNRSLVKKIQDYLKSDCYMYASLLAPHSHRLR 102
           RGIEIR RTKD+R+LVKK QDYL+SDCYMYASL+ P S RLR
Sbjct: 61  RGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 100

[Close]

BLAST of Cla018779 vs. TrEMBL
Match: A0A0A0LZ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294070 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.4e-13
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 104 EKGETGRVGYVKKVSKEVMVVSDFVEATVESS-KRSIYPNSPSISISGEHDPK-MRRIVV 163
           EKGETGRV YVKKVS EV+V+SDFVEATV  +  RSIY NSPS+++SGE DPK  RRIVV
Sbjct: 2   EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV 61

[Close]

BLAST of Cla018779 vs. TrEMBL
Match: F6HYP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-11
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 1


Query: 8   VSGGGGIGKKR-LIKRSKKKSIHKVIHYLLSDCYLYAPILISPSPINSHAAPTRGIEIRE 67
           V+ G G+  KR + K +KKK + KV+ YL SD Y++AP++  P+  NS AAP  G+E+ +
Sbjct: 5   VASGSGVQNKRPMKKNNKKKWLQKVLDYLKSDSYMFAPLIFHPT--NSAAAP--GVEMTK 64

Query: 68  RTK-DNRSLVKKIQDYLKSDCYMYASLLAP---HSHRLRLREKGETGRVGYVKKVSKEVM 123
             K DNR+L++K+++YLKSD YMYA L+     H    +  E  +TG+     K  ++ M
Sbjct: 65  PIKEDNRTLLEKVEEYLKSDNYMYAPLIITQPMHVPAAKAIESPQTGQEALRSKNWRKAM 120

[Close]

BLAST of Cla018779 vs. TrEMBL
Match: M5XIK5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016338mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 1


Query: 14 IGKKRLIKRSKKKSIHKVIHYLLSDCYLYAPILISP-----SPINSHAAPTRGIEIRERT 73
          + KKR IKR+KKK + KVI +L+S+ Y++AP++  P     SP+ + A+ T G+E R+  
Sbjct: 5  VQKKRPIKRNKKKLLKKVIDFLISNSYMFAPLISHPPHGFSSPMKTRASIT-GVEGRKPI 64

Query: 74 K-DNRSLVKKIQDYLKSDCYMYASLLA 95
          K +N+ L+KK+ DYLKSD YMYA LLA
Sbjct: 65 KGNNKRLLKKVGDYLKSDSYMYAPLLA 90

[Close]

BLAST of Cla018779 vs. TrEMBL
Match: M5XIK5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016338mg PE=4 SV=1)

HSP 1 Score: 40.8 bits (94), Expect = 1.8e+00
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 1


Query: 13  GIGKKRLIKRSKKKSIHKVIHYLLSDCYLYAPILISPSPINSHAAPTRG 62
           G+  ++ IK + K+ + KV  YL SD Y+YAP+L SP P  S ++P +G
Sbjct: 56  GVEGRKPIKGNNKRLLKKVGDYLKSDSYMYAPLLASP-PSASTSSPPKG 103

HSP 2 Score: 67.0 bits (162), Expect = 2.4e-08
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 1


Query: 13  GIGKKRLI-KRSKKKS--IHKVIHYLLSDCYLYAPILISPSPINSHAAPTRGIEIRERT- 72
           G+ KKRL  KR+KKK   + KV+ YL  DC L+AP+  S S   SH      IE++E   
Sbjct: 11  GVQKKRLKNKRNKKKYNLLDKVLDYLKFDCCLFAPLTSSNSDFRSHK-----IEMKENAK 70

Query: 73  KDNRSLVKKIQDYLKSDCYMYASLLAPHSHRLRLREKGETGRVGYVKKVSKEVMVVS-DF 132
           ++ + LVKK+ +YL SD YMYA L+ P    L +  KG      Y K V+ EV   S   
Sbjct: 71  ENKKKLVKKVGEYLISDSYMYAPLVVP-PKPLWVPTKGPQ---RYTKHVTVEVARRSISL 130

Query: 133 VEATVESSKRSIYPNSPSIS 148
            E T  ++K+SI P   S++
Sbjct: 131 KETTRLANKQSIIPARQSLA 141

[Close]

BLAST of Cla018779 vs. NCBI nr
Match: gi|659086186|ref|XP_008443802.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 3.3e-59
Identity = 130/167 (77.84%), Postives = 142/167 (85.03%), Query Frame = 1


Query: 1   MAKKMVDVSGGGG--IGKKRLIKRSKKKSIHKVIHYLLSDCYLYAPILISPSPIN-SHAA 60
           MAKKMV V GGGG  IGKKRLIKRSKKK IHKVI YLLSDCYL+AP+LISPSPIN SH  
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRERTKDNRSLVKKIQDYLKSDCYMYASLLAPHSHRLRLREKGETGRVGYVKKV 120
           PTRGIEIR RTKDNRSLVKK QDYLKSDCYMYASL+ P S   RLREKGETGRV Y KKV
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKSP--RLREKGETGRVEYAKKV 120

Query: 121 SKEVMVVSDFVEATVESS-KRSIYPNSPSISISGEHDPKM-RRIVVD 163
           S EV+V+S+FVEATV  + +RSIY NSPS+++SGE DPK+ RRIVVD
Sbjct: 121 SGEVVVMSNFVEATVSGTPQRSIYSNSPSLTLSGERDPKVRRRIVVD 165

[Close]

BLAST of Cla018779 vs. NCBI nr
Match: gi|659086188|ref|XP_008443803.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 6.2e-50
Identity = 111/140 (79.29%), Postives = 119/140 (85.00%), Query Frame = 1


Query: 1   MAKKMVDVSGGGG--IGKKRLIKRSKKKSIHKVIHYLLSDCYLYAPILISPSPIN-SHAA 60
           MAKKMV V GGGG  IGKKRLIKRSKKK IHKVI YLLSDCYL+AP+LISPSPIN SH  
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRERTKDNRSLVKKIQDYLKSDCYMYASLLAPHSHRLRLREKGETGRVGYVKKV 120
           PTRGIEIR RTKDNRSLVKK QDYLKSDCYMYASL+ P S   RLREKGETGRV Y KKV
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKSP--RLREKGETGRVEYAKKV 120

Query: 121 SKEVMVVSDFVEATVESSKR 138
           S EV+V+S+FVEATV  ++R
Sbjct: 121 SGEVVVMSNFVEATVSVTQR 138

[Close]

BLAST of Cla018779 vs. NCBI nr
Match: gi|659086190|ref|XP_008443804.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X3 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 4.2e-38
Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 1


Query: 1   MAKKMVDVSGGGG--IGKKRLIKRSKKKSIHKVIHYLLSDCYLYAPILISPSPIN-SHAA 60
           MAKKMV V GGGG  IGKKRLIKRSKKK IHKVI YLLSDCYL+AP+LISPSPIN SH  
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRERTKDNRSLVKKIQDYLKSDCYMYASLLAPHSHRLR 102
           PTRGIEIR RTKDNRSLVKK QDYLKSDCYMYASL+ P S RLR
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKSPRLR 104

[Close]

BLAST of Cla018779 vs. NCBI nr
Match: gi|700210179|gb|KGN65275.1| (hypothetical protein Csa_1G294060 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 4.3e-35
Identity = 82/102 (80.39%), Postives = 88/102 (86.27%), Query Frame = 1


Query: 1   MAKKMVDVSGGGGIGKKRLIKRSKKKSIHKVIHYLLSDCYLYAPILISPSPI-NSHAAPT 60
           MAKKMV VSGG  IGKKR IKRSKKK IHKVI YLLSDCYL+AP+LISPSPI NSH  PT
Sbjct: 1   MAKKMVHVSGG--IGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPT 60

Query: 61  RGIEIRERTKDNRSLVKKIQDYLKSDCYMYASLLAPHSHRLR 102
           RGIEIR RTKD+R+LVKK QDYL+SDCYMYASL+ P S RLR
Sbjct: 61  RGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 100

[Close]

BLAST of Cla018779 vs. NCBI nr
Match: gi|778660341|ref|XP_011656059.1| (PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 4.3e-35
Identity = 82/102 (80.39%), Postives = 88/102 (86.27%), Query Frame = 1


Query: 1   MAKKMVDVSGGGGIGKKRLIKRSKKKSIHKVIHYLLSDCYLYAPILISPSPI-NSHAAPT 60
           MAKKMV VSGG  IGKKR IKRSKKK IHKVI YLLSDCYL+AP+LISPSPI NSH  PT
Sbjct: 1   MAKKMVHVSGG--IGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPT 60

Query: 61  RGIEIRERTKDNRSLVKKIQDYLKSDCYMYASLLAPHSHRLR 102
           RGIEIR RTKD+R+LVKK QDYL+SDCYMYASL+ P S RLR
Sbjct: 61  RGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 100

The following BLAST results are available for this feature:

BLAST of Cla018779 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTL8_CUCSA	3.0e-35	80.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294060 PE=4 SV=1	[more]
A0A0A0LZ66_CUCSA	9.4e-13	73.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294070 PE=4 SV=1	[more]
F6HYP2_VITVI	2.3e-11	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=...	[more]
M5XIK5_PRUPE	5.1e-11	49.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016338mg PE=4 SV=1	[more]
M5XIK5_PRUPE	1.8e+00	42.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016338mg PE=4 SV=1	[more]

BLAST of Cla018779 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086186\|ref\|XP_008443802.1\|	3.3e-59	77.84	PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo]	[more]
gi\|659086188\|ref\|XP_008443803.1\|	6.2e-50	79.29	PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo]	[more]
gi\|659086190\|ref\|XP_008443804.1\|	4.2e-38	83.65	PREDICTED: uncharacterized protein LOC103487306 isoform X3 [Cucumis melo]	[more]
gi\|700210179\|gb\|KGN65275.1\|	4.3e-35	80.39	hypothetical protein Csa_1G294060 [Cucumis sativus]	[more]
gi\|778660341\|ref\|XP_011656059.1\|	4.3e-35	80.39	PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018779	Cla018779.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018779	Cla97C06G122160	Watermelon (97103) v2	wmwmbB406
Cla018779	Csa1G294060	Cucumber (Chinese Long) v2	cuwmB083
Cla018779	ClCG06G012880	Watermelon (Charleston Gray)	wcgwmB344
Cla018779	CSPI01G18250	Wild cucumber (PI 183967)	cpiwmB086
Cla018779	CmaCh11G004270	Cucurbita maxima (Rimu)	cmawmB143
Cla018779	CmoCh11G004270	Cucurbita moschata (Rifu)	cmowmB128
Cla018779	LsiUNG001050	Bottle gourd (USVL1VR-Ls)	lsiwmB006
Cla018779	Cp4.1LG04g12690	Cucurbita pepo (Zucchini)	cpewmB679
Cla018779	CsGy1G018310	Cucumber (Gy14) v2	cgybwmB079
Cla018779	MELO3C029631.2	Melon (DHL92) v3.6.1	medwmB288
Cla018779	Carg14056	Silver-seed gourd	carwmB0507
Cla018779	CsaV3_1G029450	Cucumber (Chinese Long) v3	cucwmB091
Cla018779	Bhi02G000632	Wax gourd	wgowmB684

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018779	Melon (DHL92) v3.5.1	mewmB293
Cla018779	Melon (DHL92) v3.5.1	mewmB441
Cla018779	Watermelon (Charleston Gray)	wcgwmB114
Cla018779	Cucumber (Chinese Long) v2	cuwmB169
Cla018779	Cucurbita pepo (Zucchini)	cpewmB372
Cla018779	Bottle gourd (USVL1VR-Ls)	lsiwmB121
Cla018779	Bottle gourd (USVL1VR-Ls)	lsiwmB416
Cla018779	Cucumber (Gy14) v2	cgybwmB160
Cla018779	Melon (DHL92) v3.6.1	medwmB427
Cla018779	Silver-seed gourd	carwmB0126
Cla018779	Cucumber (Chinese Long) v3	cucwmB182
Cla018779	Watermelon (97103) v2	wmwmbB392
Cla018779	Wax gourd	wgowmB156
Cla018779	Watermelon (97103) v1	wmwmB166
Cla018779	Cucumber (Gy14) v1	cgywmB058
Cla018779	Cucumber (Gy14) v1	cgywmB110
Cla018779	Cucurbita maxima (Rimu)	cmawmB071
Cla018779	Cucurbita moschata (Rifu)	cmowmB063