Csa1G294060 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G294060
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 13331797 .. 13332219 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAAAATGGTGCATGTCAGCGGCGGAATTGGTAAAAAGAGACGCATCAAACGGAGCAAGAAGAAATACATTCACAAAGTGATTGATTATCTGTTATCAGACTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATAGATAATTCTCATGTCACACCCACTAGAGGTTTCTTCCACTTCTCTTCTTCATAATCATACATAGTTTATTAAAGTTTATCTAAATTGGGTTCTTAATTAGGTATTGAAATTAGAGGAAGAACAAAAGATAGCCGGACTTTGGTGAAGAAGTTTCAGGATTATTTGCAATCTGATTGCTACATGTATGCTTCTCTGGTTACACCAAAATCCCCCAGACTCAGAGGTATTTATACTTCCAAATTTGGTACAATTATACCAAATATCTTACTGTGA

mRNA sequence

ATGGCGAAGAAAATGGTGCATGTCAGCGGCGGAATTGGTAAAAAGAGACGCATCAAACGGAGCAAGAAGAAATACATTCACAAAGTGATTGATTATCTGTTATCAGACTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATAGATAATTCTCATGTCACACCCACTAGAGGTATTGAAATTAGAGGAAGAACAAAAGATAGCCGGACTTTGGTGAAGAAGTTTCAGGATTATTTGCAATCTGATTGCTACATGTATGCTTCTCTGGTTACACCAAAATCCCCCAGACTCAGAGGTATTTATACTTCCAAATTTGGTACAATTATACCAAATATCTTACTGTGA

Coding sequence (CDS)

ATGGCGAAGAAAATGGTGCATGTCAGCGGCGGAATTGGTAAAAAGAGACGCATCAAACGGAGCAAGAAGAAATACATTCACAAAGTGATTGATTATCTGTTATCAGACTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATAGATAATTCTCATGTCACACCCACTAGAGGTATTGAAATTAGAGGAAGAACAAAAGATAGCCGGACTTTGGTGAAGAAGTTTCAGGATTATTTGCAATCTGATTGCTACATGTATGCTTCTCTGGTTACACCAAAATCCCCCAGACTCAGAGGTATTTATACTTCCAAATTTGGTACAATTATACCAAATATCTTACTGTGA

Protein sequence

MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRGIYTSKFGTIIPNILL*

Homology

[Close]

BLAST of Csa1G294060 vs. TrEMBL
Match: A0A0A0LTL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294060 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.8e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60
           MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG
Sbjct: 1   MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60

Query: 61  IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRGIYTSKFGTIIPNILL 117
           IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRGIYTSKFGTIIPNILL
Sbjct: 61  IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRGIYTSKFGTIIPNILL 116

[Close]

BLAST of Csa1G294060 vs. TrEMBL
Match: F6HYP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = 1


Query: 1  MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60
          M K++   SG   K+   K +KKK++ KV+DYL SD Y+FAPL+  P+   NS   P  G
Sbjct: 1  MEKRVASGSGVQNKRPMKKNNKKKWLQKVLDYLKSDSYMFAPLIFHPT---NSAAAP--G 60

Query: 61 IEIRGRTK-DSRTLVKKFQDYLQSDCYMYASLV 93
          +E+    K D+RTL++K ++YL+SD YMYA L+
Sbjct: 61 VEMTKPIKEDNRTLLEKVEEYLKSDNYMYAPLI 88

[Close]

BLAST of Csa1G294060 vs. TrEMBL
Match: F6HYP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=1)

HSP 1 Score: 34.3 bits (77), Expect = 1.2e+02
Identity = 18/52 (34.62%), Postives = 28/52 (53.85%), Query Frame = 1


Query: 11  GIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRGIE 63
           G+   + IK   +  + KV +YL SD Y++APL+I+       HV   + IE
Sbjct: 55  GVEMTKPIKEDNRTLLEKVEEYLKSDNYMYAPLIIT----QPMHVPAAKAIE 102

HSP 2 Score: 71.2 bits (173), Expect = 9.2e-10
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 1


Query: 12  IGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTR----GIEIRGRT 71
           + KKR IKR+KKK + KVID+L+S+ Y+FAPL+  P P   S    TR    G+E R   
Sbjct: 5   VQKKRPIKRNKKKLLKKVIDFLISNSYMFAPLISHP-PHGFSSPMKTRASITGVEGRKPI 64

Query: 72  K-DSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRGIYTSKFGTIIPNI 115
           K +++ L+KK  DYL+SD YMYA L+   SP      +   GTI P I
Sbjct: 65  KGNNKRLLKKVGDYLKSDSYMYAPLLA--SPPSASTSSPPKGTISPII 109

[Close]

BLAST of Csa1G294060 vs. TrEMBL
Match: A0A067KUZ1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04116 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 14  KKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDN---SHVTP---TRGIEIRGRT 73
           +KR +K++KKK + KV+DYL SD Y+FAP LISP P+ N   S + P   T  +E  G  
Sbjct: 12  RKRSVKKNKKKVLKKVVDYLKSDSYMFAP-LISP-PLTNFLASRIVPSSSTTEVETTGNK 71

Query: 74  KD-SRTLVKKFQDYLQSDCYMYASLVTPKSP 98
           K   ++ ++K  +YL+SD ++Y+ L  P+ P
Sbjct: 72  KQRKKSFIQKVGEYLKSDTHLYSHLCVPRHP 100

[Close]

BLAST of Csa1G294060 vs. TrEMBL
Match: A0A067KUZ1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04116 PE=4 SV=1)

HSP 1 Score: 34.7 bits (78), Expect = 9.5e+01
Identity = 16/37 (43.24%), Postives = 26/37 (70.27%), Query Frame = 1


Query: 60 GIEIRGRT--KDSRTLVKKFQDYLQSDCYMYASLVTP 95
          G+  R R+  K+ + ++KK  DYL+SD YM+A L++P
Sbjct: 8  GVHKRKRSVKKNKKKVLKKVVDYLKSDSYMFAPLISP 44

HSP 2 Score: 66.2 bits (160), Expect = 2.9e-08
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 11 GIGKKR-RIKRSKKKY--IHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRGIEIRGRT 70
          G+ KKR + KR+KKKY  + KV+DYL  DC LFAPL  S S    SH      IE++   
Sbjct: 11 GVQKKRLKNKRNKKKYNLLDKVLDYLKFDCCLFAPLTSSNSDF-RSHK-----IEMKENA 70

Query: 71 KDSRT-LVKKFQDYLQSDCYMYASLVTPKSP 98
          K+++  LVKK  +YL SD YMYA LV P  P
Sbjct: 71 KENKKKLVKKVGEYLISDSYMYAPLVVPPKP 95

[Close]

BLAST of Csa1G294060 vs. TAIR10
Match: AT5G57790.1 (AT5G57790.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-08
Identity = 31/99 (31.31%), Postives = 50/99 (50.51%), Query Frame = 1


Query: 12  IGKKRRIKRSK-KKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPT------------ 71
           +G ++++KR K ++ +  ++ YL SD YLFAPL  +  P+     TP             
Sbjct: 9   LGARKKLKRKKCRRLVRSIVTYLKSDTYLFAPLFSNFPPLTTEIDTPPPSNSKPSTVDDI 68

Query: 72  --RGIEIRGRTK--DSRTLVKKFQDYLQSDCYMYASLVT 94
              G E  G  K    R + +K ++YL+SDCYMY+ +++
Sbjct: 69  SMEGFESLGIEKLIKKRRMSEKVKEYLKSDCYMYSPMIS 107

[Close]

BLAST of Csa1G294060 vs. NCBI nr
Match: gi|700210179|gb|KGN65275.1| (hypothetical protein Csa_1G294060 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 4.0e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60
           MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG
Sbjct: 1   MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60

Query: 61  IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRGIYTSKFGTIIPNILL 117
           IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRGIYTSKFGTIIPNILL
Sbjct: 61  IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRGIYTSKFGTIIPNILL 116

[Close]

BLAST of Csa1G294060 vs. NCBI nr
Match: gi|778660341|ref|XP_011656059.1| (PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60
           MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG
Sbjct: 1   MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60

Query: 61  IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRG 102
           IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRG
Sbjct: 61  IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRG 101

[Close]

BLAST of Csa1G294060 vs. NCBI nr
Match: gi|659086190|ref|XP_008443804.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X3 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-45
Identity = 95/105 (90.48%), Postives = 99/105 (94.29%), Query Frame = 1


Query: 1   MAKKMVHVSGG----IGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 60
           MAKKMVHV GG    IGKKR IKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRG 102
           PTRGIEIRGRTKD+R+LVKKFQDYL+SDCYMYASLVTPKSPRLRG
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKSPRLRG 105

[Close]

BLAST of Csa1G294060 vs. NCBI nr
Match: gi|659086186|ref|XP_008443802.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 7.4e-45
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 1


Query: 1   MAKKMVHVSGG----IGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 60
           MAKKMVHV GG    IGKKR IKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 101
           PTRGIEIRGRTKD+R+LVKKFQDYL+SDCYMYASLVTPKSPRLR
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKSPRLR 104

[Close]

BLAST of Csa1G294060 vs. NCBI nr
Match: gi|659086188|ref|XP_008443803.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 7.4e-45
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 1


Query: 1   MAKKMVHVSGG----IGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 60
           MAKKMVHV GG    IGKKR IKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 101
           PTRGIEIRGRTKD+R+LVKKFQDYL+SDCYMYASLVTPKSPRLR
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKSPRLR 104

The following BLAST results are available for this feature:

BLAST of Csa1G294060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTL8_CUCSA	2.8e-59	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294060 PE=4 SV=1	[more]
F6HYP2_VITVI	1.1e-10	45.16	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=...	[more]
F6HYP2_VITVI	1.2e+02	34.62	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=...	[more]
A0A067KUZ1_JATCU	2.3e-08	41.76	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04116 PE=4 SV=1	[more]
A0A067KUZ1_JATCU	9.5e+01	43.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04116 PE=4 SV=1	[more]

BLAST of Csa1G294060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57790.1	5.9e-08	31.31	unknown protein	[more]

BLAST of Csa1G294060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210179\|gb\|KGN65275.1\|	4.0e-59	100.00	hypothetical protein Csa_1G294060 [Cucumis sativus]	[more]
gi\|778660341\|ref\|XP_011656059.1\|	2.0e-50	100.00	PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus]	[more]
gi\|659086190\|ref\|XP_008443804.1\|	1.5e-45	90.48	PREDICTED: uncharacterized protein LOC103487306 isoform X3 [Cucumis melo]	[more]
gi\|659086186\|ref\|XP_008443802.1\|	7.4e-45	90.38	PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo]	[more]
gi\|659086188\|ref\|XP_008443803.1\|	7.4e-45	90.38	PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G294060.1	Csa1G294060.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G294060	Cla018779	Watermelon (97103) v1	cuwmB083
Csa1G294060	ClCG06G012880	Watermelon (Charleston Gray)	cuwcgB070
Csa1G294060	LsiUNG001050	Bottle gourd (USVL1VR-Ls)	culsiB000
Csa1G294060	MELO3C029631.2	Melon (DHL92) v3.6.1	cumedB054
Csa1G294060	Cla97C06G122160	Watermelon (97103) v2	cuwmbB070
Csa1G294060	Bhi02G000632	Wax gourd	cuwgoB101
Csa1G294060	CSPI01G18250	Wild cucumber (PI 183967)	cpicuB001
Csa1G294060	CmaCh11G004270	Cucurbita maxima (Rimu)	cmacuB104
Csa1G294060	CmoCh11G004270	Cucurbita moschata (Rifu)	cmocuB092
Csa1G294060	Cp4.1LG04g12690	Cucurbita pepo (Zucchini)	cpecuB636
Csa1G294060	CsGy1G018310	Cucumber (Gy14) v2	cgybcuB002
Csa1G294060	Carg14056	Silver-seed gourd	carcuB0531

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G294060	Cucurbita maxima (Rimu)	cmacuB065
Csa1G294060	Cucurbita moschata (Rifu)	cmocuB048
Csa1G294060	Melon (DHL92) v3.5.1	cumeB059
Csa1G294060	Watermelon (Charleston Gray)	cuwcgB011
Csa1G294060	Watermelon (97103) v1	cuwmB078
Csa1G294060	Cucurbita pepo (Zucchini)	cpecuB350
Csa1G294060	Bottle gourd (USVL1VR-Ls)	culsiB009
Csa1G294060	Bottle gourd (USVL1VR-Ls)	culsiB065
Csa1G294060	Cucumber (Gy14) v2	cgybcuB052
Csa1G294060	Melon (DHL92) v3.6.1	cumedB070
Csa1G294060	Silver-seed gourd	carcuB0133
Csa1G294060	Watermelon (97103) v2	cuwmbB024
Csa1G294060	Wax gourd	cuwgoB008
Csa1G294060	Cucumber (Chinese Long) v2	cucuB006
Csa1G294060	Cucumber (Gy14) v1	cgycuB052
Csa1G294060	Cucumber (Gy14) v1	cgycuB094