CsGy1G018310 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G018310
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hypothetical protein
Location	Chr1 : 16449897 .. 16450833 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAACCGTAAAACTTCCGAAGCTAGACGTGGCGCACAAATTAGCCGAAAAGTGGATCATCTACTCTCCGGCTCAACCGCCAAAGAATAACCAAGCTGCATTTCGAATCTGTTCACAGAACAAAACAAAAGAAACCGAAAAACAAAGGCCATGGCGAAGAAAATGGTGCATGTCAGCGGCGGAATTGGTAAAAAGAGACGCATCAAACGGAGCAAGAAGAAATACATTCACAAAGTGATTGATTATCTGTTATCAGACTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATAGATAATTCTCATGTCACACCCACTAGAGGTTTCTTCCACTTCTCTTCTTCATAATCATACATAGTTTATTAAAGTTTATCTAAATTGGGTTCTTAATTAGGTATTGAAATTAGAGGAAGAACAAAAGATAGCCGGACTTTGGTGAAGAAGTTTCAGGATTATTTGCAATCTGATTGCTACATGTATGCTTCTCTGGTTACACCAAAATCCCCCAGACTCAGAGGTATTTATACTTCCAAATTTGGTACAATTATATCAAATATCTTACTGTGAATTTGTTGTTTGAAATTGAATTTTTTAATTTTTGAAAAATAGAGAAGGGAGAAACAGGGCGGGTTGAGTACGTAAAGAAGGTATCAGGGGAAGTAGTAGTTATGAGTGATTTTGTGGAAGCTACGGTTAATGGAACACCAGACCGCTCCATCTATTCTAATTCTCCATCTTTAACACTTTCAGGTCCAATTTTCTAGAACGTAATTAATTGAAGCTTCTGTTTTCGATTATTTTGTTTTATGTTTATCTATTCATGGTTGGGTTTCTGTAGGTGAGCGTGACCCAAAGGCGAGGAGGAGGATTGTTGTTGATTGAGCTTTGTGGTTATTGTTAGAACTTTCTTTTTCCTTCTTCTTCTTCT

mRNA sequence

ATGTCAAACCGTAAAACTTCCGAAGCTAGACAACAAAACAAAAGAAACCGAAAAACAAAGGCCATGGCGAAGAAAATGGTGCATGTCAGCGGCGGAATTGGTAAAAAGAGACGCATCAAACGGAGCAAGAAGAAATACATTCACAAAGTGATTGATTATCTGTTATCAGACTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATAGATAATTCTCATGTCACACCCACTAGAGGTATTGAAATTAGAGGAAGAACAAAAGATAGCCGGACTTTGGTGAAGAAGTTTCAGGATTATTTGCAATCTGATTGCTACATGTATGCTTCTCTGGTTACACCAAAATCCCCCAGACTCAGAGAGAAGGGAGAAACAGGGCGGGTTGAGTACGTAAAGAAGGTATCAGGGGAAGTAGTAGTTATGAGTGATTTTGTGGAAGCTACGGTTAATGGAACACCAGACCGCTCCATCTATTCTAATTCTCCATCTTTAACACTTTCAGGTGAGCGTGACCCAAAGGCGAGGAGGAGGATTGTTGTTGATTGAGCTTTGTGGTTATTGTTAGAACTTTCTTTTTCCTTCTTCTTCTTCT

Coding sequence (CDS)

ATGTCAAACCGTAAAACTTCCGAAGCTAGACAACAAAACAAAAGAAACCGAAAAACAAAGGCCATGGCGAAGAAAATGGTGCATGTCAGCGGCGGAATTGGTAAAAAGAGACGCATCAAACGGAGCAAGAAGAAATACATTCACAAAGTGATTGATTATCTGTTATCAGACTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATAGATAATTCTCATGTCACACCCACTAGAGGTATTGAAATTAGAGGAAGAACAAAAGATAGCCGGACTTTGGTGAAGAAGTTTCAGGATTATTTGCAATCTGATTGCTACATGTATGCTTCTCTGGTTACACCAAAATCCCCCAGACTCAGAGAGAAGGGAGAAACAGGGCGGGTTGAGTACGTAAAGAAGGTATCAGGGGAAGTAGTAGTTATGAGTGATTTTGTGGAAGCTACGGTTAATGGAACACCAGACCGCTCCATCTATTCTAATTCTCCATCTTTAACACTTTCAGGTGAGCGTGACCCAAAGGCGAGGAGGAGGATTGTTGTTGATTGA

Protein sequence

MSNRKTSEARQQNKRNRKTKAMAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLREKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVVD

Homology

[Close]

BLAST of CsGy1G018310 vs. NCBI nr
Match: XP_008443802.1 (PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 4.3e-48
Identity = 140/165 (84.85%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 22  MAKKMVHVS----GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 81
           MAKKMVHV                   KYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGXXXXXXXXXXXXXXXXXXKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 82  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYVKKVSG 141
           PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEY KKVSG
Sbjct: 61  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYAKKVSG 120

Query: 142 EVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVVD 183
           EVVVMS+FVEATV+GTP RSIYSNSPSLTLSGERDPK RRRIVVD
Sbjct: 121 EVVVMSNFVEATVSGTPQRSIYSNSPSLTLSGERDPKVRRRIVVD 165

[Close]

BLAST of CsGy1G018310 vs. NCBI nr
Match: XP_008443803.1 (PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 2.8e-31
Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 0


Query: 22  MAKKMVHVS----GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 81
           MAKKMVHV                   KYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGXXXXXXXXXXXXXXXXXXKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 82  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYVKKVSG 141
           PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEY KKVSG
Sbjct: 61  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYAKKVSG 120

Query: 142 EVVVMSDFVEATVNGT 154
           EVVVMS+FVEATV+ T
Sbjct: 121 EVVVMSNFVEATVSVT 136

[Close]

BLAST of CsGy1G018310 vs. NCBI nr
Match: KGN65275.1 (hypothetical protein Csa_1G294060 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 5.3e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 22 MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 81
          MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG
Sbjct: 1  MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60

Query: 82 IEIRGRTKD 91
          IEIRGRTKD
Sbjct: 61 IEIRGRTKD 69

[Close]

BLAST of CsGy1G018310 vs. NCBI nr
Match: XP_011656059.1 (PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 5.3e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 22 MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 81
          MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG
Sbjct: 1  MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60

Query: 82 IEIRGRTKD 91
          IEIRGRTKD
Sbjct: 61 IEIRGRTKD 69

[Close]

BLAST of CsGy1G018310 vs. NCBI nr
Match: KGN65276.1 (hypothetical protein Csa_1G294070 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 4.4e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 122 EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV 181
           EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV
Sbjct: 2   EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV 61

Query: 182 D 183
           D
Sbjct: 62  D 62

[Close]

BLAST of CsGy1G018310 vs. TrEMBL
Match: tr|A0A1S3B8Y3|A0A1S3B8Y3_CUCME (uncharacterized protein LOC103487306 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487306 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.9e-48
Identity = 140/165 (84.85%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 22  MAKKMVHVS----GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 81
           MAKKMVHV                   KYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGXXXXXXXXXXXXXXXXXXKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 82  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYVKKVSG 141
           PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEY KKVSG
Sbjct: 61  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYAKKVSG 120

Query: 142 EVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVVD 183
           EVVVMS+FVEATV+GTP RSIYSNSPSLTLSGERDPK RRRIVVD
Sbjct: 121 EVVVMSNFVEATVSGTPQRSIYSNSPSLTLSGERDPKVRRRIVVD 165

[Close]

BLAST of CsGy1G018310 vs. TrEMBL
Match: tr|A0A1S3B9M0|A0A1S3B9M0_CUCME (uncharacterized protein LOC103487306 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487306 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 0


Query: 22  MAKKMVHVS----GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 81
           MAKKMVHV                   KYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGXXXXXXXXXXXXXXXXXXKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 82  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYVKKVSG 141
           PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEY KKVSG
Sbjct: 61  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYAKKVSG 120

Query: 142 EVVVMSDFVEATVNGT 154
           EVVVMS+FVEATV+ T
Sbjct: 121 EVVVMSNFVEATVSVT 136

[Close]

BLAST of CsGy1G018310 vs. TrEMBL
Match: tr|A0A0A0LTL8|A0A0A0LTL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294060 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.5e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 22 MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 81
          MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG
Sbjct: 1  MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60

Query: 82 IEIRGRTKD 91
          IEIRGRTKD
Sbjct: 61 IEIRGRTKD 69

[Close]

BLAST of CsGy1G018310 vs. TrEMBL
Match: tr|A0A0A0LZ66|A0A0A0LZ66_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294070 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 122 EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV 181
           EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV
Sbjct: 2   EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV 61

Query: 182 D 183
           D
Sbjct: 62  D 62

[Close]

BLAST of CsGy1G018310 vs. TrEMBL
Match: tr|A0A1S3B9N8|A0A1S3B9N8_CUCME (uncharacterized protein LOC103487306 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487306 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 53/73 (72.60%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 22 MAKKMVHVS----GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 81
          MAKKMVHV                   KYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1  MAKKMVHVGXXXXXXXXXXXXXXXXXXKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 82 PTRGIEIRGRTKD 91
          PTRGIEIRGRTKD
Sbjct: 61 PTRGIEIRGRTKD 73

The following BLAST results are available for this feature:

BLAST of CsGy1G018310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443802.1	4.3e-48	84.85	PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo]	[more]
XP_008443803.1	2.8e-31	82.35	PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo]	[more]
KGN65275.1	5.3e-30	100.00	hypothetical protein Csa_1G294060 [Cucumis sativus]	[more]
XP_011656059.1	5.3e-30	100.00	PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus]	[more]
KGN65276.1	4.4e-24	100.00	hypothetical protein Csa_1G294070 [Cucumis sativus]	[more]

BLAST of CsGy1G018310 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G018310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G018310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8Y3\|A0A1S3B8Y3_CUCME	2.9e-48	84.85	uncharacterized protein LOC103487306 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B9M0\|A0A1S3B9M0_CUCME	1.9e-31	82.35	uncharacterized protein LOC103487306 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LTL8\|A0A0A0LTL8_CUCSA	3.5e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294060 PE=4 SV=1	[more]
tr\|A0A0A0LZ66\|A0A0A0LZ66_CUCSA	2.9e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294070 PE=4 SV=1	[more]
tr\|A0A1S3B9N8\|A0A1S3B9N8_CUCME	1.2e-17	72.60	uncharacterized protein LOC103487306 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G018310.1	CsGy1G018310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35
None	No IPR available	PANTHER	PTHR36811	FAMILY NOT NAMED	coord: 30..114

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G018310	Cla018779	Watermelon (97103) v1	cgybwmB079
CsGy1G018310	Csa1G294060	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G018310	ClCG06G012880	Watermelon (Charleston Gray)	cgybwcgB063
CsGy1G018310	CSPI01G18250	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G018310	CmaCh11G004270	Cucurbita maxima (Rimu)	cgybcmaB039
CsGy1G018310	CmoCh11G004270	Cucurbita moschata (Rifu)	cgybcmoB037
CsGy1G018310	LsiUNG001050	Bottle gourd (USVL1VR-Ls)	cgyblsiB001
CsGy1G018310	Cp4.1LG04g12690	Cucurbita pepo (Zucchini)	cgybcpeB109
CsGy1G018310	MELO3C029631.2	Melon (DHL92) v3.6.1	cgybmedB045
CsGy1G018310	CsaV3_1G029450	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G018310	Cla97C06G122160	Watermelon (97103) v2	cgybwmbB063
CsGy1G018310	Bhi02G000632	Wax gourd	cgybwgoB093
CsGy1G018310	Carg14056	Silver-seed gourd	carcgybB0508

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G018310	Cucumber (Gy14) v2	cgybcgybB010
CsGy1G018310	Cucurbita maxima (Rimu)	cgybcmaB014
CsGy1G018310	Cucurbita maxima (Rimu)	cgybcmaB136
CsGy1G018310	Cucurbita moschata (Rifu)	cgybcmoB014
CsGy1G018310	Cucurbita pepo (Zucchini)	cgybcpeB030
CsGy1G018310	Cucurbita pepo (Zucchini)	cgybcpeB040
CsGy1G018310	Cucumber (Chinese Long) v2	cgybcuB017
CsGy1G018310	Bottle gourd (USVL1VR-Ls)	cgyblsiB008
CsGy1G018310	Bottle gourd (USVL1VR-Ls)	cgyblsiB060
CsGy1G018310	Melon (DHL92) v3.6.1	cgybmedB064
CsGy1G018310	Melon (DHL92) v3.5.1	cgybmeB049
CsGy1G018310	Melon (DHL92) v3.5.1	cgybmeB068
CsGy1G018310	Watermelon (Charleston Gray)	cgybwcgB011
CsGy1G018310	Watermelon (97103) v1	cgybwmB078
CsGy1G018310	Wild cucumber (PI 183967)	cgybcpiB015
CsGy1G018310	Silver-seed gourd	carcgybB0132
CsGy1G018310	Cucumber (Chinese Long) v3	cgybcucB017
CsGy1G018310	Watermelon (97103) v2	cgybwmbB025
CsGy1G018310	Wax gourd	cgybwgoB006