CsGy1G018310.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G018310.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hypothetical protein
Location	Chr1 : 16449897 .. 16450833 (+)
Sequence length	595

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAACCGTAAAACTTCCGAAGCTAGACGTGGCGCACAAATTAGCCGAAAAGTGGATCATCTACTCTCCGGCTCAACCGCCAAAGAATAACCAAGCTGCATTTCGAATCTGTTCACAGAACAAAACAAAAGAAACCGAAAAACAAAGGCCATGGCGAAGAAAATGGTGCATGTCAGCGGCGGAATTGGTAAAAAGAGACGCATCAAACGGAGCAAGAAGAAATACATTCACAAAGTGATTGATTATCTGTTATCAGACTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATAGATAATTCTCATGTCACACCCACTAGAGGTTTCTTCCACTTCTCTTCTTCATAATCATACATAGTTTATTAAAGTTTATCTAAATTGGGTTCTTAATTAGGTATTGAAATTAGAGGAAGAACAAAAGATAGCCGGACTTTGGTGAAGAAGTTTCAGGATTATTTGCAATCTGATTGCTACATGTATGCTTCTCTGGTTACACCAAAATCCCCCAGACTCAGAGGTATTTATACTTCCAAATTTGGTACAATTATATCAAATATCTTACTGTGAATTTGTTGTTTGAAATTGAATTTTTTAATTTTTGAAAAATAGAGAAGGGAGAAACAGGGCGGGTTGAGTACGTAAAGAAGGTATCAGGGGAAGTAGTAGTTATGAGTGATTTTGTGGAAGCTACGGTTAATGGAACACCAGACCGCTCCATCTATTCTAATTCTCCATCTTTAACACTTTCAGGTCCAATTTTCTAGAACGTAATTAATTGAAGCTTCTGTTTTCGATTATTTTGTTTTATGTTTATCTATTCATGGTTGGGTTTCTGTAGGTGAGCGTGACCCAAAGGCGAGGAGGAGGATTGTTGTTGATTGAGCTTTGTGGTTATTGTTAGAACTTTCTTTTTCCTTCTTCTTCTTCT

mRNA sequence

ATGTCAAACCGTAAAACTTCCGAAGCTAGACAACAAAACAAAAGAAACCGAAAAACAAAGGCCATGGCGAAGAAAATGGTGCATGTCAGCGGCGGAATTGGTAAAAAGAGACGCATCAAACGGAGCAAGAAGAAATACATTCACAAAGTGATTGATTATCTGTTATCAGACTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATAGATAATTCTCATGTCACACCCACTAGAGGTATTGAAATTAGAGGAAGAACAAAAGATAGCCGGACTTTGGTGAAGAAGTTTCAGGATTATTTGCAATCTGATTGCTACATGTATGCTTCTCTGGTTACACCAAAATCCCCCAGACTCAGAGAGAAGGGAGAAACAGGGCGGGTTGAGTACGTAAAGAAGGTATCAGGGGAAGTAGTAGTTATGAGTGATTTTGTGGAAGCTACGGTTAATGGAACACCAGACCGCTCCATCTATTCTAATTCTCCATCTTTAACACTTTCAGGTGAGCGTGACCCAAAGGCGAGGAGGAGGATTGTTGTTGATTGAGCTTTGTGGTTATTGTTAGAACTTTCTTTTTCCTTCTTCTTCTTCT

Coding sequence (CDS)

ATGTCAAACCGTAAAACTTCCGAAGCTAGACAACAAAACAAAAGAAACCGAAAAACAAAGGCCATGGCGAAGAAAATGGTGCATGTCAGCGGCGGAATTGGTAAAAAGAGACGCATCAAACGGAGCAAGAAGAAATACATTCACAAAGTGATTGATTATCTGTTATCAGACTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATAGATAATTCTCATGTCACACCCACTAGAGGTATTGAAATTAGAGGAAGAACAAAAGATAGCCGGACTTTGGTGAAGAAGTTTCAGGATTATTTGCAATCTGATTGCTACATGTATGCTTCTCTGGTTACACCAAAATCCCCCAGACTCAGAGAGAAGGGAGAAACAGGGCGGGTTGAGTACGTAAAGAAGGTATCAGGGGAAGTAGTAGTTATGAGTGATTTTGTGGAAGCTACGGTTAATGGAACACCAGACCGCTCCATCTATTCTAATTCTCCATCTTTAACACTTTCAGGTGAGCGTGACCCAAAGGCGAGGAGGAGGATTGTTGTTGATTGA

Protein sequence

MSNRKTSEARQQNKRNRKTKAMAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLREKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVVD

Homology

[Close]

BLAST of CsGy1G018310.1 vs. NCBI nr
Match: XP_008443802.1 (PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 4.3e-48
Identity = 140/165 (84.85%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 22  MAKKMVHVS----GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 81
           MAKKMVHV                   KYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGXXXXXXXXXXXXXXXXXXKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 82  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYVKKVSG 141
           PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEY KKVSG
Sbjct: 61  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYAKKVSG 120

Query: 142 EVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVVD 183
           EVVVMS+FVEATV+GTP RSIYSNSPSLTLSGERDPK RRRIVVD
Sbjct: 121 EVVVMSNFVEATVSGTPQRSIYSNSPSLTLSGERDPKVRRRIVVD 165

[Close]

BLAST of CsGy1G018310.1 vs. NCBI nr
Match: XP_008443803.1 (PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 2.8e-31
Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 0


Query: 22  MAKKMVHVS----GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 81
           MAKKMVHV                   KYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGXXXXXXXXXXXXXXXXXXKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 82  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYVKKVSG 141
           PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEY KKVSG
Sbjct: 61  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYAKKVSG 120

Query: 142 EVVVMSDFVEATVNGT 154
           EVVVMS+FVEATV+ T
Sbjct: 121 EVVVMSNFVEATVSVT 136

[Close]

BLAST of CsGy1G018310.1 vs. NCBI nr
Match: KGN65275.1 (hypothetical protein Csa_1G294060 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 5.3e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 22 MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 81
          MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG
Sbjct: 1  MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60

Query: 82 IEIRGRTKD 91
          IEIRGRTKD
Sbjct: 61 IEIRGRTKD 69

[Close]

BLAST of CsGy1G018310.1 vs. NCBI nr
Match: XP_011656059.1 (PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 5.3e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 22 MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 81
          MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG
Sbjct: 1  MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60

Query: 82 IEIRGRTKD 91
          IEIRGRTKD
Sbjct: 61 IEIRGRTKD 69

[Close]

BLAST of CsGy1G018310.1 vs. NCBI nr
Match: KGN65276.1 (hypothetical protein Csa_1G294070 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 4.4e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 122 EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV 181
           EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV
Sbjct: 2   EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV 61

Query: 182 D 183
           D
Sbjct: 62  D 62

[Close]

BLAST of CsGy1G018310.1 vs. TrEMBL
Match: tr|A0A1S3B8Y3|A0A1S3B8Y3_CUCME (uncharacterized protein LOC103487306 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487306 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.9e-48
Identity = 140/165 (84.85%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 22  MAKKMVHVS----GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 81
           MAKKMVHV                   KYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGXXXXXXXXXXXXXXXXXXKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 82  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYVKKVSG 141
           PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEY KKVSG
Sbjct: 61  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYAKKVSG 120

Query: 142 EVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVVD 183
           EVVVMS+FVEATV+GTP RSIYSNSPSLTLSGERDPK RRRIVVD
Sbjct: 121 EVVVMSNFVEATVSGTPQRSIYSNSPSLTLSGERDPKVRRRIVVD 165

[Close]

BLAST of CsGy1G018310.1 vs. TrEMBL
Match: tr|A0A1S3B9M0|A0A1S3B9M0_CUCME (uncharacterized protein LOC103487306 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487306 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 0


Query: 22  MAKKMVHVS----GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 81
           MAKKMVHV                   KYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1   MAKKMVHVGXXXXXXXXXXXXXXXXXXKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 82  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYVKKVSG 141
           PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEY KKVSG
Sbjct: 61  PTRGIEIRGRTKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLREKGETGRVEYAKKVSG 120

Query: 142 EVVVMSDFVEATVNGT 154
           EVVVMS+FVEATV+ T
Sbjct: 121 EVVVMSNFVEATVSVT 136

[Close]

BLAST of CsGy1G018310.1 vs. TrEMBL
Match: tr|A0A0A0LTL8|A0A0A0LTL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294060 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.5e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 22 MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 81
          MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG
Sbjct: 1  MAKKMVHVSGGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPTRG 60

Query: 82 IEIRGRTKD 91
          IEIRGRTKD
Sbjct: 61 IEIRGRTKD 69

[Close]

BLAST of CsGy1G018310.1 vs. TrEMBL
Match: tr|A0A0A0LZ66|A0A0A0LZ66_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294070 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 122 EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV 181
           EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV
Sbjct: 2   EKGETGRVEYVKKVSGEVVVMSDFVEATVNGTPDRSIYSNSPSLTLSGERDPKARRRIVV 61

Query: 182 D 183
           D
Sbjct: 62  D 62

[Close]

BLAST of CsGy1G018310.1 vs. TrEMBL
Match: tr|A0A1S3B9N8|A0A1S3B9N8_CUCME (uncharacterized protein LOC103487306 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487306 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 53/73 (72.60%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 22 MAKKMVHVS----GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVT 81
          MAKKMVHV                   KYIHKVIDYLLSDCYLFAPLLISPSPI+NSHVT
Sbjct: 1  MAKKMVHVGXXXXXXXXXXXXXXXXXXKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 82 PTRGIEIRGRTKD 91
          PTRGIEIRGRTKD
Sbjct: 61 PTRGIEIRGRTKD 73

The following BLAST results are available for this feature:

BLAST of CsGy1G018310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443802.1	4.3e-48	84.85	PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo]	[more]
XP_008443803.1	2.8e-31	82.35	PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo]	[more]
KGN65275.1	5.3e-30	100.00	hypothetical protein Csa_1G294060 [Cucumis sativus]	[more]
XP_011656059.1	5.3e-30	100.00	PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus]	[more]
KGN65276.1	4.4e-24	100.00	hypothetical protein Csa_1G294070 [Cucumis sativus]	[more]

BLAST of CsGy1G018310.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G018310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G018310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8Y3\|A0A1S3B8Y3_CUCME	2.9e-48	84.85	uncharacterized protein LOC103487306 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B9M0\|A0A1S3B9M0_CUCME	1.9e-31	82.35	uncharacterized protein LOC103487306 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LTL8\|A0A0A0LTL8_CUCSA	3.5e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294060 PE=4 SV=1	[more]
tr\|A0A0A0LZ66\|A0A0A0LZ66_CUCSA	2.9e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G294070 PE=4 SV=1	[more]
tr\|A0A1S3B9N8\|A0A1S3B9N8_CUCME	1.2e-17	72.60	uncharacterized protein LOC103487306 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G018310	CsGy1G018310	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G018310.1	CsGy1G018310.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G018310.1.exon.1	CsGy1G018310.1.exon.1	exon
CsGy1G018310.1.exon.2	CsGy1G018310.1.exon.2	exon
CsGy1G018310.1.exon.3	CsGy1G018310.1.exon.3	exon
CsGy1G018310.1.exon.4	CsGy1G018310.1.exon.4	exon
CsGy1G018310.1.exon.5	CsGy1G018310.1.exon.5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G018310.1.CDS.1	CsGy1G018310.1.CDS.1	CDS
CsGy1G018310.1.CDS.2	CsGy1G018310.1.CDS.2	CDS
CsGy1G018310.1.CDS.3	CsGy1G018310.1.CDS.3	CDS
CsGy1G018310.1.CDS.4	CsGy1G018310.1.CDS.4	CDS
CsGy1G018310.1.CDS.5	CsGy1G018310.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G018310.1.three_prime_UTR.1	CsGy1G018310.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35
None	No IPR available	PANTHER	PTHR36811	FAMILY NOT NAMED	coord: 30..114