LsiUNG001050.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	LsiUNG001050.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr00 : 2790304 .. 2791400 (-)
Sequence length	772

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAAAAGAAAAAACAGAGAGACGAAAGGAATTAAAGGGGATGGCGAAGACAATGCTGCACGTTGGTAGTGGCGGTGGAATTGGTAAGAAGAGACTCATCAATCGGAGGAAGAAGAAAAGGATTCACAAAGTGATCGATTATCTGTTATCAGATTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATTAATTCTCATGCCTCACCCACAAGAGGTTTCTTCCACTTCTCTTCTTCATACACCATTCATTAATTTACCTCTAAAATTCGTTTTTTTTTTTTTTTTTATAATTAGGGATCGAAATTAGAGAACGCACAAAAGATAACCGGAGTTTGGTGCAGAAGATTCAGGATTATTTGAAATCTGATGTCTACATGTATGCTTCTCTGCTTGCACCACATTCCTTCAGACTCAGACTCAGAGGTATACAATTTCAATTTCAATTCAATTAAATTAAATCTTAATAGACTGTGAATCTGTTCAATCCTGTGTGTTTATTGTTTGAAATTGAATATTGATCTTGAAAAACAGAGAAGGGAGAAACAGGGGGTGTTGGGTACGTAAAGAGGGTAAGTAGGGAAGTTTCAAGGACAACATGTAATAGAGGAGAGGAGGAAGTAATGGTTATAAGTGATTTTGTGGAAGCAACGGTTAATAGCACACCAAGGGAATCATCTCACCGCTCCATCTTTCCTAATTCTCCATCTTTATCAATTTCAGGTCTAACTTTCTAAACATTACTTCTGCTTTATATATATATATATATCTGGGTTGATTTCTCCATTATTTACGCATTCTACGTTCTTTTGGTTGGAGGTTTCTTAACAATTTATTTATTTTTGGTTGGGTTTGTATAGGTGAGCGTGACCCAAAGATGAGGAGGATTGTTGTTGATTGAGCTTCGGTCGGATTTTCCTTTAGAATTAGTTGTGGAAGTTGTATAGTAGTAGATAATGCTTTACAGGCAAAACCAACTTGGGATTTGGGAGAATATGGTGTGCTATTATGTAAACTTTGTTAAGTATGTATTAAAAAGATTTGGATGTATCATATAATTAGATCTTAACTTGAAGTTGAAGCTGTATTAATC

mRNA sequence

CGCAAAAGAAAAAACAGAGAGACGAAAGGAATTAAAGGGGATGGCGAAGACAATGCTGCACGTTGGTAGTGGCGGTGGAATTGGTAAGAAGAGACTCATCAATCGGAGGAAGAAGAAAAGGATTCACAAAGTGATCGATTATCTGTTATCAGATTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATTAATTCTCATGCCTCACCCACAAGAGGGATCGAAATTAGAGAACGCACAAAAGATAACCGGAGTTTGGTGCAGAAGATTCAGGATTATTTGAAATCTGATGTCTACATGTATGCTTCTCTGCTTGCACCACATTCCTTCAGACTCAGACTCAGAGAGAAGGGAGAAACAGGGGGTGTTGGGTACGTAAAGAGGGTAAGTAGGGAAGTTTCAAGGACAACATGTAATAGAGGAGAGGAGGAAGTAATGGTTATAAGTGATTTTGTGGAAGCAACGGTTAATAGCACACCAAGGGAATCATCTCACCGCTCCATCTTTCCTAATTCTCCATCTTTATCAATTTCAGGTGAGCGTGACCCAAAGATGAGGAGGATTGTTGTTGATTGAGCTTCGGTCGGATTTTCCTTTAGAATTAGTTGTGGAAGTTGTATAGTAGTAGATAATGCTTTACAGGCAAAACCAACTTGGGATTTGGGAGAATATGGTGTGCTATTATGTAAACTTTGTTAAGTATGTATTAAAAAGATTTGGATGTATCATATAATTAGATCTTAACTTGAAGTTGAAGCTGTATTAATC

Coding sequence (CDS)

ATGGCGAAGACAATGCTGCACGTTGGTAGTGGCGGTGGAATTGGTAAGAAGAGACTCATCAATCGGAGGAAGAAGAAAAGGATTCACAAAGTGATCGATTATCTGTTATCAGATTGCTACTTATTTGCACCTCTCCTCATTTCTCCTTCACCCATTAATTCTCATGCCTCACCCACAAGAGGGATCGAAATTAGAGAACGCACAAAAGATAACCGGAGTTTGGTGCAGAAGATTCAGGATTATTTGAAATCTGATGTCTACATGTATGCTTCTCTGCTTGCACCACATTCCTTCAGACTCAGACTCAGAGAGAAGGGAGAAACAGGGGGTGTTGGGTACGTAAAGAGGGTAAGTAGGGAAGTTTCAAGGACAACATGTAATAGAGGAGAGGAGGAAGTAATGGTTATAAGTGATTTTGTGGAAGCAACGGTTAATAGCACACCAAGGGAATCATCTCACCGCTCCATCTTTCCTAATTCTCCATCTTTATCAATTTCAGGTGAGCGTGACCCAAAGATGAGGAGGATTGTTGTTGATTGA

Protein sequence

MAKTMLHVGSGGGIGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPINSHASPTRGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRVSREVSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSLSISGERDPKMRRIVVD

Homology

[Close]

BLAST of LsiUNG001050.1 vs. TrEMBL
Match: A0A0A0LTL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294060 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.1e-33
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   MAKTMLHVGSGGGIGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHASPT 60
           MAK M+HV   GGIGKKR I R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +PT
Sbjct: 1   MAKKMVHVS--GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPT 60

Query: 61  RGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLR 102
           RGIEIR RTKD+R+LV+K QDYL+SD YMYASL+ P S RLR
Sbjct: 61  RGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 100

[Close]

BLAST of LsiUNG001050.1 vs. TrEMBL
Match: F6HYP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.8e-12
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 1


Query: 8  VGSGGGIGKKRLINRRKKKR-IHKVIDYLLSDCYLFAPLLISPSPINSHASPTRGIEIRE 67
          V SG G+  KR + +  KK+ + KV+DYL SD Y+FAPL+  P+  NS A+P  G+E+ +
Sbjct: 5  VASGSGVQNKRPMKKNNKKKWLQKVLDYLKSDSYMFAPLIFHPT--NSAAAP--GVEMTK 64

Query: 68 RTK-DNRSLVQKIQDYLKSDVYMYASLL 94
            K DNR+L++K+++YLKSD YMYA L+
Sbjct: 65 PIKEDNRTLLEKVEEYLKSDNYMYAPLI 88

[Close]

BLAST of LsiUNG001050.1 vs. TrEMBL
Match: M5XIK5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016338mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 1


Query: 14 IGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISP-----SPINSHASPTRGIEIRERT 73
          + KKR I R KKK + KVID+L+S+ Y+FAPL+  P     SP+ + AS T G+E R+  
Sbjct: 5  VQKKRPIKRNKKKLLKKVIDFLISNSYMFAPLISHPPHGFSSPMKTRASIT-GVEGRKPI 64

Query: 74 K-DNRSLVQKIQDYLKSDVYMYASLLA 95
          K +N+ L++K+ DYLKSD YMYA LLA
Sbjct: 65 KGNNKRLLKKVGDYLKSDSYMYAPLLA 90

[Close]

BLAST of LsiUNG001050.1 vs. TrEMBL
Match: A0A0A0LZ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294070 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 47/77 (61.04%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 104 EKGETGGVGYVKRVSREVSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSL 163
           EKGETG V YVK+VS EV            +V+SDFVEATVN TP     RSI+ NSPSL
Sbjct: 2   EKGETGRVEYVKKVSGEV------------VVMSDFVEATVNGTP----DRSIYSNSPSL 61

Query: 164 SISGERDPK-MRRIVVD 180
           ++SGERDPK  RRIVVD
Sbjct: 62  TLSGERDPKARRRIVVD 62

[Close]

BLAST of LsiUNG001050.1 vs. TrEMBL
Match: W9RKH4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023018 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 59/157 (37.58%), Postives = 84/157 (53.50%), Query Frame = 1


Query: 13  GIGKKRLINRRKKKR---IHKVIDYLLSDCYLFAPLLISPSPINSHASPTRGIEIRERTK 72
           G+ KKRL N+R KK+   + KV+DYL  DC LFAPL  S S   SH      IE++E  K
Sbjct: 11  GVQKKRLKNKRNKKKYNLLDKVLDYLKFDCCLFAPLTSSNSDFRSHK-----IEMKENAK 70

Query: 73  DN-RSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRVSREVSRTTCNR 132
           +N + LV+K+ +YL SD YMYA L+ P    L +  KG      Y K V+ EV+R + + 
Sbjct: 71  ENKKKLVKKVGEYLISDSYMYAPLVVPPK-PLWVPTKGPQ---RYTKHVTVEVARRSISL 130

Query: 133 GEEEVMV-ISDFVEATVNSTPRESSHRSIFPNSPSLS 165
            E   +      + A  +   +E+   +I+ N  S S
Sbjct: 131 KETTRLANKQSIIPARQSLAHKETVKHAIYQNCRSSS 158

[Close]

BLAST of LsiUNG001050.1 vs. TAIR10
Match: AT5G57790.1 (AT5G57790.1 unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-07
Identity = 43/151 (28.48%), Postives = 74/151 (49.01%), Query Frame = 1


Query: 14  IGKKRLINRRKKKR-IHKVIDYLLSDCYLFAPL----------LISPSPINSHASPTRGI 73
           +G ++ + R+K +R +  ++ YL SD YLFAPL          + +P P NS  S    I
Sbjct: 9   LGARKKLKRKKCRRLVRSIVTYLKSDTYLFAPLFSNFPPLTTEIDTPPPSNSKPSTVDDI 68

Query: 74  EIR-------ERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVK 133
            +        E+    R + +K+++YLKSD YMY+ +++    +L    KG+   +    
Sbjct: 69  SMEGFESLGIEKLIKKRRMSEKVKEYLKSDCYMYSPMISSPP-KLGSSVKGK---MQITM 128

Query: 134 RVSREVSRTTCNRGEEEVMVI-SDFVEATVN 146
            VS ++S TT    +     + SD  E T++
Sbjct: 129 EVSTKLSTTTMKEDDSGYRNLRSDIAEQTLH 155

[Close]

BLAST of LsiUNG001050.1 vs. NCBI nr
Match: gi|659086186|ref|XP_008443802.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 4.1e-55
Identity = 129/183 (70.49%), Postives = 143/183 (78.14%), Query Frame = 1


Query: 1   MAKTMLHVGSGGG--IGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHAS 60
           MAK M+HVG GGG  IGKKRLI R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRV 120
           PTRGIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S   RLREKGETG V Y K+V
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS--PRLREKGETGRVEYAKKV 120

Query: 121 SREVSRTTCNRGEEEVMVISDFVEATVNSTPRESSHRSIFPNSPSLSISGERDPKM-RRI 180
           S             EV+V+S+FVEATV+ TP+    RSI+ NSPSL++SGERDPK+ RRI
Sbjct: 121 S------------GEVVVMSNFVEATVSGTPQ----RSIYSNSPSLTLSGERDPKVRRRI 165

[Close]

BLAST of LsiUNG001050.1 vs. NCBI nr
Match: gi|659086188|ref|XP_008443803.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 6.6e-45
Identity = 108/152 (71.05%), Postives = 117/152 (76.97%), Query Frame = 1


Query: 1   MAKTMLHVGSGGG--IGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHAS 60
           MAK M+HVG GGG  IGKKRLI R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLRLREKGETGGVGYVKRV 120
           PTRGIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S   RLREKGETG V Y K+V
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS--PRLREKGETGRVEYAKKV 120

Query: 121 SREVSRTTCNRGEEEVMVISDFVEATVNSTPR 150
           S             EV+V+S+FVEATV+ T R
Sbjct: 121 S------------GEVVVMSNFVEATVSVTQR 138

[Close]

BLAST of LsiUNG001050.1 vs. NCBI nr
Match: gi|659086190|ref|XP_008443804.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X3 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-36
Identity = 85/104 (81.73%), Postives = 89/104 (85.58%), Query Frame = 1


Query: 1   MAKTMLHVGSGGG--IGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHAS 60
           MAK M+HVG GGG  IGKKRLI R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PTRGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLR 102
           PTRGIEIR RTKDNRSLV+K QDYLKSD YMYASL+ P S RLR
Sbjct: 61  PTRGIEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKSPRLR 104

[Close]

BLAST of LsiUNG001050.1 vs. NCBI nr
Match: gi|700210179|gb|KGN65275.1| (hypothetical protein Csa_1G294060 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 4.4e-33
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   MAKTMLHVGSGGGIGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHASPT 60
           MAK M+HV   GGIGKKR I R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +PT
Sbjct: 1   MAKKMVHVS--GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPT 60

Query: 61  RGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLR 102
           RGIEIR RTKD+R+LV+K QDYL+SD YMYASL+ P S RLR
Sbjct: 61  RGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 100

[Close]

BLAST of LsiUNG001050.1 vs. NCBI nr
Match: gi|778660341|ref|XP_011656059.1| (PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 4.4e-33
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   MAKTMLHVGSGGGIGKKRLINRRKKKRIHKVIDYLLSDCYLFAPLLISPSPI-NSHASPT 60
           MAK M+HV   GGIGKKR I R KKK IHKVIDYLLSDCYLFAPLLISPSPI NSH +PT
Sbjct: 1   MAKKMVHVS--GGIGKKRRIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTPT 60

Query: 61  RGIEIRERTKDNRSLVQKIQDYLKSDVYMYASLLAPHSFRLR 102
           RGIEIR RTKD+R+LV+K QDYL+SD YMYASL+ P S RLR
Sbjct: 61  RGIEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLR 100

The following BLAST results are available for this feature:

BLAST of LsiUNG001050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of LsiUNG001050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTL8_CUCSA	3.1e-33	77.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294060 PE=4 SV=1	[more]
F6HYP2_VITVI	8.8e-12	48.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=...	[more]
M5XIK5_PRUPE	2.6e-11	51.72	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016338mg PE=4 SV=1	[more]
A0A0A0LZ66_CUCSA	9.7e-11	61.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294070 PE=4 SV=1	[more]
W9RKH4_9ROSA	9.7e-11	37.58	Uncharacterized protein OS=Morus notabilis GN=L484_023018 PE=4 SV=1	[more]

BLAST of LsiUNG001050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57790.1	1.5e-07	28.48	unknown protein	[more]

BLAST of LsiUNG001050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086186\|ref\|XP_008443802.1\|	4.1e-55	70.49	PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo]	[more]
gi\|659086188\|ref\|XP_008443803.1\|	6.6e-45	71.05	PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo]	[more]
gi\|659086190\|ref\|XP_008443804.1\|	1.5e-36	81.73	PREDICTED: uncharacterized protein LOC103487306 isoform X3 [Cucumis melo]	[more]
gi\|700210179\|gb\|KGN65275.1\|	4.4e-33	77.45	hypothetical protein Csa_1G294060 [Cucumis sativus]	[more]
gi\|778660341\|ref\|XP_011656059.1\|	4.4e-33	77.45	PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
LsiUNG001050	LsiUNG001050	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
LsiUNG001050.1	LsiUNG001050.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
LsiUNG001050.1.three_prime_UTR.1	LsiUNG001050.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
LsiUNG001050.1.CDS.4	LsiUNG001050.1.CDS.4	CDS
LsiUNG001050.1.CDS.3	LsiUNG001050.1.CDS.3	CDS
LsiUNG001050.1.CDS.2	LsiUNG001050.1.CDS.2	CDS
LsiUNG001050.1.CDS.1	LsiUNG001050.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
LsiUNG001050.1.five_prime_UTR.1	LsiUNG001050.1.five_prime_UTR.1	five_prime_UTR