Lsi11G004850 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G004850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Acyl carrier protein
Location	chr11 : 5112098 .. 5114432 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCACGAACTTGCTTGCTTTGCTTTCTCCGTCCCATTTACACTTTTCGCCACTCCAAATTCTCTCTTCCTTTTTTCTCTATCAGTTCATCAATGGCTTCGATCACAGCTTCATCATTTTGCCTGCGATCCGCAGCTCCCCAATCGCGCCAAATCGCTGTAAAATTTTCAATTCCTTTTTCTCTTTTCCTCATTGCGTGCGTTTAATGGATCCGTTGTACGATTTCTCATGTTTGTCATCTCTCGTTTTTTTCATTTTCTTCTTAATTCTAACCCTTTCGATCTCGATTTTTGCGTCGATTTCTCTTTCAATGTCGTTAATTACGAAGTTTGGAGCATTGGTTTGAATCGGTGTTGTGATTTTGTATTGCATGGCTATGAAACGTATGGATGATGGACTTCACATCACTTATTTGATTTCAGAATGTTTTATATCTCTTTATTGTGTTGTTTTACTTTTATTCGTGTTATTTCAATACTGATGTGAATTTCTTCCCTAATTTTCACCGCTATTTGGGGTCGGAGAGGTAGAAGGGAATAGTATTCGAACTATTTGCTCTCGTCTCCCTTCAAATTGCTTTCTAGGAAGTAACAGGACCAAAAGATAGGCCAACAGACCTTAAATTACGAGCGATCTTGAAATTCTTACATATGTTTACCGTTCTAGTTATGATGATGATCGCATCTGCCAACTTGAAGTCCTTATGTCCTGAAAAATTCTCTGTATTACTGTATGTGTGTGTTGATTATCATTTGTTTGTTGTTCTTTTTGAGTTTTCTCTCTGTTAAGAACTCGAGCTATATGAGACTAGATCATATATGTTCTGTGCCGAACATTTTGGTGAATTGTTTCTTGGTAAGCAGGCAATATCCAAGCTTTCTGGTTCGAAGAGGGTTTCGTTTTCTTACCAAGGGAGAAATAATCTCTATTCTAGAAGATTACAGTCGCTTCGAATTTCATGTGCTGTGAGTCCTTTTTGCTGCATGTTCTTCGGGAAACGCCAATTACTATTGCAATATGATGTTAACTGTGTGTGATATGGAACAGGCCAAACCAGAAACGGTCGAAAAGGTTAGCCGAATAGTGAAGAAGCAATTGGCATTGCCAGATGATTCCACTGTTAATGGCGAGTCTAAATTTTCAACCCTTGGAGCTGATTCTCTTGACACGGTAAAGTACTATACTGCATATGTTTCATAAAATTCACCCTTGGCATGTTTTTTTTTTATTTTATTTTAGGGAAATTTTCACGGATAGAAAAAAAATTAAAAAAAAAAACACCGTTTCTGTCACTAATAGACCGTGATAGACTTACAACTATCTAAAAATTTTTTGGGTAAATAGTTTTCCTTATTGTTCTATTTTTAAAAATTTCTCTTTATTTTATTTTATTTTAAGTTAAAAATATATAAATTACGACTCTTAAGTTGATATTATTTTTGGCTAAACTACGTCTATGTCAAATAGGTCTTTTAGGCTTTGCCAAGATGTGCATAGCTGATCAATCGGCATAAAAAAAAAGTAATATCAACTTCGAAGCCTGTTCCCATATTGTGTGGAAAAAAAAAAAATCCCTCAAGTCTTCCATATTATTAACATTATTATCCCAGAGCTAATAAATGTATACTACTTGAATTTTTTTCAAATCTACCAAGAAGATCGAGATGCTCAAAGTTCTAGAATTGTACTTATAATCTAATTTAAACTACTACTTGCACGAAAATGATTTTCCCAAAAAAACTTGTCACGGACGACCTACGTGTATGTTCCATGATGATATTGATATCGATGAGTATATCAATAAAATATTATTATCTATGATATTTTTGTAAATCATAAAAATTTACAATATTTATTTAAATTAATAATTAAGTAGTTTCTCCTTCCCACATATCCTTTTCAAAAAAAGAAAAAAATTGTTTTTACTTCTAAAACTACTATTTCATATTTCATATTTATATTGTTTTCTAAGTACTTTTTTCCACTCAGGTAAGTGTATTATGTATTATTTTGTTTAACGCACTAAATTTTACATGAAAATTAATGTAAAAGGAAGACAAATCATCAAAATTAACTTTAATGGGGGATGCATACAAGTTTTGGATATTAAATTTGACATGCAATGCAATAATATACATATATATATTGGTTGGATCAGGTTGAGATCGTTATGGGACTTGAGGAAGAATTTGGGATAAGTGTGGAAGAGGAGAGCGCACAGAGCATCACAACCGTTCAAGAGGCTGCAGACATGATCGAGGATCTCATCCTCAAAAAGAGTGCTTAAAAATATTCCCACTGCCTTAAGGGAGGGTGAGCTAAACAACCCCCCCCC

mRNA sequence

GGCCACGAACTTGCTTGCTTTGCTTTCTCCGTCCCATTTACACTTTTCGCCACTCCAAATTCTCTCTTCCTTTTTTCTCTATCAGTTCATCAATGGCTTCGATCACAGCTTCATCATTTTGCCTGCGATCCGCAGCTCCCCAATCGCGCCAAATCGCTGCAATATCCAAGCTTTCTGGTTCGAAGAGGGTTTCGTTTTCTTACCAAGGGAGAAATAATCTCTATTCTAGAAGATTACAGTCGCTTCGAATTTCATGTGCTGCCAAACCAGAAACGGTCGAAAAGGTTAGCCGAATAGTGAAGAAGCAATTGGCATTGCCAGATGATTCCACTGTTAATGGCGAGTCTAAATTTTCAACCCTTGGAGCTGATTCTCTTGACACGGTTGAGATCGTTATGGGACTTGAGGAAGAATTTGGGATAAGTGTGGAAGAGGAGAGCGCACAGAGCATCACAACCGTTCAAGAGGCTGCAGACATGATCGAGGATCTCATCCTCAAAAAGAGTGCTTAAAAATATTCCCACTGCCTTAAGGGAGGGTGAGCTAAACAACCCCCCCCC

Coding sequence (CDS)

ATGGCTTCGATCACAGCTTCATCATTTTGCCTGCGATCCGCAGCTCCCCAATCGCGCCAAATCGCTGCAATATCCAAGCTTTCTGGTTCGAAGAGGGTTTCGTTTTCTTACCAAGGGAGAAATAATCTCTATTCTAGAAGATTACAGTCGCTTCGAATTTCATGTGCTGCCAAACCAGAAACGGTCGAAAAGGTTAGCCGAATAGTGAAGAAGCAATTGGCATTGCCAGATGATTCCACTGTTAATGGCGAGTCTAAATTTTCAACCCTTGGAGCTGATTCTCTTGACACGGTTGAGATCGTTATGGGACTTGAGGAAGAATTTGGGATAAGTGTGGAAGAGGAGAGCGCACAGAGCATCACAACCGTTCAAGAGGCTGCAGACATGATCGAGGATCTCATCCTCAAAAAGAGTGCTTAA

Protein sequence

MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQEAADMIEDLILKKSA

Homology

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BLAST of Lsi11G004850 vs. Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-32
Identity = 88/140 (62.86%), Postives = 105/140 (75.00%), Query Frame = 1


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLR--ISCAAK 60
           MAS+T +S  + S     +   A S++S  + VS   +G++     R++S R  + CAAK
Sbjct: 1   MASVTGTSISMASF----KASLAPSRVSNLRSVSLPIKGKS-FAPLRMRSARFVVCCAAK 60

Query: 61  PETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQ 120
           PETVEKV  IVKKQLALPDDS V GESKF+TLGADSLDTVEIVMGLEEEFGI+VEEESAQ
Sbjct: 61  PETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQ 120

Query: 121 SITTVQEAADMIEDLILKKS 139
           SI TVQ+AAD+IE LI KKS
Sbjct: 121 SIATVQDAADLIEKLIEKKS 135

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BLAST of Lsi11G004850 vs. Swiss-Prot
Match: ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.5e-32
Identity = 87/133 (65.41%), Postives = 100/133 (75.19%), Query Frame = 1


Query: 6   ASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQ-SLRISCAAKPETVEK 65
           ASS C++SA   S    A  ++S  + VS     R + +SRR   SLR++C AKPETV K
Sbjct: 7   ASSICIKSA---SCSALAPGRISSLRSVSLPVS-RKSFFSRRGSFSLRVNCQAKPETVTK 66

Query: 66  VSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSITTVQ 125
           V  IVKKQLALPDDS V+G SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQSI TVQ
Sbjct: 67  VCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQ 126

Query: 126 EAADMIEDLILKK 138
           +AAD+IE L+ KK
Sbjct: 127 DAADLIEKLMEKK 135

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BLAST of Lsi11G004850 vs. Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.2e-31
Identity = 88/138 (63.77%), Postives = 100/138 (72.46%), Query Frame = 1


Query: 1   MASITA-SSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKP 60
           MAS  A +S C++SA+        IS L  S  +  S +   +L S +    R+SC AKP
Sbjct: 1   MASAAAGASICIKSASCSPLAPGRISSLR-SVSLPVSRKSFPSLRSSKGSFARVSCQAKP 60

Query: 61  ETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQS 120
           ETV KV RIVKKQLALPDDS VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQS
Sbjct: 61  ETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQS 120

Query: 121 ITTVQEAADMIEDLILKK 138
           I TVQ+AAD+IE L+ KK
Sbjct: 121 IQTVQDAADLIEKLMEKK 137

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BLAST of Lsi11G004850 vs. Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.1e-30
Identity = 88/139 (63.31%), Postives = 101/139 (72.66%), Query Frame = 1


Query: 1   MASITA-SSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQ-SLRISCAAK 60
           MAS  A +S C++SA+        IS L  S  +  S +   +L S +   +LR+SC AK
Sbjct: 1   MASAAAGASICIKSASFSPLAPGRISSLR-SVSLPVSRKSFPSLKSSKSSFALRVSCQAK 60

Query: 61  PETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQ 120
           PETV KV  IVKKQLALPDDS VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQ
Sbjct: 61  PETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQ 120

Query: 121 SITTVQEAADMIEDLILKK 138
           SI TVQ+AAD+IE L+ KK
Sbjct: 121 SIQTVQDAADLIEKLMEKK 138

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BLAST of Lsi11G004850 vs. Swiss-Prot
Match: ACP3_CUPLA (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.8e-29
Identity = 81/139 (58.27%), Postives = 96/139 (69.06%), Query Frame = 1


Query: 2   ASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGR---NNLYSRRLQSLRISCAAK 61
           A+  +S  C++SA+    +    S LS  + VS    G+   +   SR   S R+ C AK
Sbjct: 4   AAAGSSLICIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCCQAK 63

Query: 62  PETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQ 121
            ETV +V  IVKKQLALP+DS VNG SKFS LGADSLDTVEIVMGLEEEFGISVEEESAQ
Sbjct: 64  QETVTRVCEIVKKQLALPEDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQ 123

Query: 122 SITTVQEAADMIEDLILKK 138
           SI TVQ+AAD+IE L+  K
Sbjct: 124 SIQTVQDAADLIEKLVGNK 142

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BLAST of Lsi11G004850 vs. TrEMBL
Match: A0A0A0LG91_CUCSA (Acyl carrier protein OS=Cucumis sativus GN=Csa_2G013290 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.0e-56
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITASS  LRSAAPQ RQIA  SKLSGS+RVSFS+QGRNN  SRRLQSLRISCAAKPE
Sbjct: 1   MASITASSLSLRSAAPQWRQIAGTSKLSGSRRVSFSFQGRNNFSSRRLQSLRISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVS+IVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSKIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAAD+IEDLILKK A
Sbjct: 121 TTVQEAADLIEDLILKKGA 139

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BLAST of Lsi11G004850 vs. TrEMBL
Match: M5W1R0_PRUPE (Acyl carrier protein OS=Prunus persica GN=PRUPE_ppa013030mg PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-34
Identity = 92/143 (64.34%), Postives = 110/143 (76.92%), Query Frame = 1


Query: 1   MASIT-ASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNL---YSRRLQSLRISCA 60
           MA+I+ ASS  LRS  P+S Q  A+S+ +G + +S S  GR++L     +R   L +SCA
Sbjct: 1   MAAISGASSISLRSIPPRSHQNLALSRTNGLRSISLSDHGRSSLSFGLQQRSVRLSVSCA 60

Query: 61  AKPETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEES 120
           AKPETVEKV  IV+KQLALPDDS V GESKF+ LGADSLDTVEIVMGLEEEFGISVEE+S
Sbjct: 61  AKPETVEKVCTIVRKQLALPDDSAVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEDS 120

Query: 121 AQSITTVQEAADMIEDLILKKSA 140
           AQSI TVQ+AAD+IE +I K  A
Sbjct: 121 AQSIATVQDAADLIEKIIEKNKA 143

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BLAST of Lsi11G004850 vs. TrEMBL
Match: E6YBQ8_ARAHY (Acyl carrier protein OS=Arachis hypogaea GN=ACP5 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 90/138 (65.22%), Postives = 106/138 (76.81%), Query Frame = 1


Query: 3   SITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNL-YSRRLQSLR--ISCAAKP 62
           ++T +S  +RS   Q  QI A S +S S  V  S  GR N+ +S R +S+R  +SCAAK 
Sbjct: 5   ALTGNSISMRSLRSQLNQIPACSLISSSSSVLTSSFGRRNVSFSLRPRSIRLTVSCAAKQ 64

Query: 63  ETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQS 122
           ET++KV  IVKKQLALPD S V GESKFS LGADSLDTVEIVMGLEEEFGISVEE+SAQS
Sbjct: 65  ETIDKVCAIVKKQLALPDSSPVTGESKFSALGADSLDTVEIVMGLEEEFGISVEEDSAQS 124

Query: 123 ITTVQEAADMIEDLILKK 138
           ITTVQEAAD+IE++I KK
Sbjct: 125 ITTVQEAADLIEEIIQKK 142

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BLAST of Lsi11G004850 vs. TrEMBL
Match: A0A151U536_CAJCA (Acyl carrier protein (Fragment) OS=Cajanus cajan GN=KK1_007091 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.1e-33
Identity = 88/139 (63.31%), Postives = 104/139 (74.82%), Query Frame = 1


Query: 3   SITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNL-YSRRLQS--LRISCAAKP 62
           + T  S   RS  PQ     A S ++G +  SFS  GR N+ +S +  S  LR+SCAAKP
Sbjct: 15  TFTRVSLSARSLRPQFNHRLAFSSIAGPRSSSFSSYGRRNVSFSSQQHSVRLRVSCAAKP 74

Query: 63  ETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQS 122
           ETVEKV ++VK QLALPDDS V GES F+ LGADSLDTVEIVMGLEE FGISVEE+SAQS
Sbjct: 75  ETVEKVCKVVKNQLALPDDSKVTGESTFAALGADSLDTVEIVMGLEEVFGISVEEDSAQS 134

Query: 123 ITTVQEAADMIEDLILKKS 139
           I+TVQEAAD+IED+I K+S
Sbjct: 135 ISTVQEAADLIEDIISKQS 153

[Close]

BLAST of Lsi11G004850 vs. TrEMBL
Match: E6YBQ4_ARAHY (Acyl carrier protein OS=Arachis hypogaea GN=ACP5 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.1e-33
Identity = 90/138 (65.22%), Postives = 106/138 (76.81%), Query Frame = 1


Query: 3   SITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNL-YSRRLQSLR--ISCAAKP 62
           ++T +S  +RS   Q  QI A S +S S  V  S  GR N+ ++ R +S+R  +SCAAK 
Sbjct: 5   ALTGNSISMRSLRSQLNQIPACSLISSSSSVLTSSFGRRNVSFNLRPRSIRLTVSCAAKQ 64

Query: 63  ETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQS 122
           ETV+KV  IVKKQLALPD S V GESKFS LGADSLDTVEIVMGLEEEFGISVEE+SAQS
Sbjct: 65  ETVDKVCTIVKKQLALPDSSPVTGESKFSALGADSLDTVEIVMGLEEEFGISVEEDSAQS 124

Query: 123 ITTVQEAADMIEDLILKK 138
           ITTVQEAAD+IE++I KK
Sbjct: 125 ITTVQEAADLIEEIIQKK 142

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BLAST of Lsi11G004850 vs. TAIR10
Match: AT4G25050.2 (AT4G25050.2 acyl carrier protein 4)

HSP 1 Score: 113.6 bits (283), Expect = 9.7e-26
Identity = 79/151 (52.32%), Postives = 99/151 (65.56%), Query Frame = 1


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MAS++ +S   +  AP +     + K S S+ V+F   GR    ++ L+ L+ISCAAK E
Sbjct: 1   MASLSTTSLSFK--APSTTISQVLRKASSSQSVTF---GRFTSSTKSLR-LQISCAAKAE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDT------------VEIVMGLEEEF 120
           TV+KVS IVK+QLAL  D  +  ESKFS LGADSLDT            VEIVM LEE+F
Sbjct: 61  TVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVCYTLSVSYHCHVEIVMALEEKF 120

Query: 121 GISVEEESAQSITTVQEAADMIEDLILKKSA 140
            ISVEE  AQ+ITT+QEAAD+IEDL+ KK A
Sbjct: 121 NISVEESDAQNITTIQEAADLIEDLVQKKPA 145

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BLAST of Lsi11G004850 vs. TAIR10
Match: AT1G54580.1 (AT1G54580.1 acyl carrier protein 2)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 72/140 (51.43%), Postives = 95/140 (67.86%), Query Frame = 1


Query: 1   MASITASSFCLRSAAPQSRQIAA--ISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAK 60
           MASI AS+     A P+   IAA  +   S  +R S S+  R  L +R    L +SCAAK
Sbjct: 1   MASIAASASISLQARPRQLAIAASQVKSFSNGRRSSLSFNLRQ-LPTR----LTVSCAAK 60

Query: 61  PETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQ 120
           PETV+KV  +V+KQL+L +   +   +KF+ LGADSLDTVEIVMGLEEEFGI + EE AQ
Sbjct: 61  PETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQ 120

Query: 121 SITTVQEAADMIEDLILKKS 139
           SI TV++AA +IE+L+ +K+
Sbjct: 121 SIATVEQAAALIEELLFEKA 135

[Close]

BLAST of Lsi11G004850 vs. TAIR10
Match: AT1G54630.1 (AT1G54630.1 acyl carrier protein 3)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 73/142 (51.41%), Postives = 95/142 (66.90%), Query Frame = 1


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRV-SFSYQGRNNLYSRRLQ---SLRISCA 60
           MASI  S+     A P+   I       G+K+V SFSY  R+NL     Q    L + CA
Sbjct: 1   MASIATSASTSLQARPRQLVI-------GAKQVKSFSYGSRSNLSFNLRQLPTRLTVYCA 60

Query: 61  AKPETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEES 120
           AKPETV+KV  +V+KQL+L +   +   +KF+ LGADSLDTVEIVMGLEEEFGI + EE 
Sbjct: 61  AKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEK 120

Query: 121 AQSITTVQEAADMIEDLILKKS 139
           AQSI TV++AA +IE+L+L+K+
Sbjct: 121 AQSIATVEQAAALIEELLLEKA 135

[Close]

BLAST of Lsi11G004850 vs. TAIR10
Match: AT5G27200.1 (AT5G27200.1 acyl carrier protein 5)

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-25
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 1


Query: 6   ASSFCLRSAAPQSRQIAAISKLSGSKRVS-FSYQGRNNLYS--RRLQSLR--ISCAAKPE 65
           A+SFC  S + Q+   A  ++   +K+ + F+ +  NNL    RRL   R  +SCA K E
Sbjct: 2   ATSFC-SSISMQAPFSATTTRFCLNKQATIFNNEKTNNLSFSLRRLMPARLAVSCAVKQE 61

Query: 66  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 125
           TVEKVS IVKKQL+L DD  V   +KF+ LGADSLDTVEIVMGLEEEFGI++ EE A+ I
Sbjct: 62  TVEKVSEIVKKQLSLTDDQKVTAGTKFTELGADSLDTVEIVMGLEEEFGITMAEERAKEI 121

Query: 126 TTVQEAADMIEDLILKKSA 140
            TVQ+AA++IE+L+ +K+A
Sbjct: 122 ATVQQAAELIEELVQEKTA 139

[Close]

BLAST of Lsi11G004850 vs. TAIR10
Match: AT3G05020.1 (AT3G05020.1 acyl carrier protein 1)

HSP 1 Score: 111.3 bits (277), Expect = 4.8e-25
Identity = 72/136 (52.94%), Postives = 94/136 (69.12%), Query Frame = 1


Query: 2   ASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPET 61
           AS++  + CL +     ++ A IS   G   +SF+   R ++ SRRL    +SCAAK ET
Sbjct: 7   ASVSLQTSCLATTRISFQKPALISN-HGKTNLSFNL--RRSIPSRRLS---VSCAAKQET 66

Query: 62  VEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSIT 121
           +EKVS IVKKQL+L  D  V  E+KF+ LGADSLDTVEIVMGLEEEF I + EE AQ I 
Sbjct: 67  IEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIA 126

Query: 122 TVQEAADMIEDLILKK 138
           TV++AA++IE+LI +K
Sbjct: 127 TVEQAAELIEELINEK 136

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BLAST of Lsi11G004850 vs. NCBI nr
Match: gi|449442875|ref|XP_004139206.1| (PREDICTED: acyl carrier protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.9e-56
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITASS  LRSAAPQ RQIA  SKLSGS+RVSFS+QGRNN  SRRLQSLRISCAAKPE
Sbjct: 1   MASITASSLSLRSAAPQWRQIAGTSKLSGSRRVSFSFQGRNNFSSRRLQSLRISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVS+IVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSKIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAAD+IEDLILKK A
Sbjct: 121 TTVQEAADLIEDLILKKGA 139

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BLAST of Lsi11G004850 vs. NCBI nr
Match: gi|659070522|ref|XP_008455529.1| (PREDICTED: acyl carrier protein 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 4.2e-55
Identity = 125/139 (89.93%), Postives = 128/139 (92.09%), Query Frame = 1


Query: 1   MASITASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNLYSRRLQSLRISCAAKPE 60
           MASITASS  LR+A P  RQIA  SKLSGS+ VSFSYQGRNN  SRRLQSLRISCAAKPE
Sbjct: 1   MASITASSLSLRTAPPHCRQIAGTSKLSGSRMVSFSYQGRNNFSSRRLQSLRISCAAKPE 60

Query: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120
           TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI
Sbjct: 61  TVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEESAQSI 120

Query: 121 TTVQEAADMIEDLILKKSA 140
           TTVQEAAD+IEDLILKK A
Sbjct: 121 TTVQEAADLIEDLILKKGA 139

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BLAST of Lsi11G004850 vs. NCBI nr
Match: gi|645222390|ref|XP_008218144.1| (PREDICTED: acyl carrier protein 1, chloroplastic [Prunus mume])

HSP 1 Score: 156.4 bits (394), Expect = 3.7e-35
Identity = 94/143 (65.73%), Postives = 111/143 (77.62%), Query Frame = 1


Query: 1   MASIT-ASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNL---YSRRLQSLRISCA 60
           MA+I+ ASS  LRS+ P+S Q  A+S+ +G + +S S  GRN+L     +R   L +SCA
Sbjct: 1   MAAISGASSISLRSSPPRSHQNLALSRTNGLRSISLSDHGRNSLSFGLQQRSVHLSVSCA 60

Query: 61  AKPETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEES 120
           AKPETVEKV  IV+KQLALPDDS V GESKF+ LGADSLDTVEIVMGLEEEFGISVEE+S
Sbjct: 61  AKPETVEKVCTIVRKQLALPDDSAVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEDS 120

Query: 121 AQSITTVQEAADMIEDLILKKSA 140
           AQSI TVQ+AAD+IE LI K  A
Sbjct: 121 AQSIATVQDAADLIEKLIEKNKA 143

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BLAST of Lsi11G004850 vs. NCBI nr
Match: gi|658040409|ref|XP_008355800.1| (PREDICTED: acyl carrier protein 1, chloroplastic-like [Malus domestica])

HSP 1 Score: 153.3 bits (386), Expect = 3.1e-34
Identity = 93/144 (64.58%), Postives = 111/144 (77.08%), Query Frame = 1


Query: 1   MASITASSFC--LRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNL---YSRRLQSLRISC 60
           MA++T +S    +RSA  Q  Q  A+S+ +G + VS +  GR++L     +R   LR+SC
Sbjct: 1   MAAVTGASAISLIRSAPQQFHQNJALSRTNGLRSVSLAGYGRSSLSFGLQQRSARLRVSC 60

Query: 61  AAKPETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEE 120
           AAKP+TVEKVS+IVKKQLALPDDS V GESKFS LGADSLDTVEIVMGLEEEFGISVEEE
Sbjct: 61  AAKPDTVEKVSKIVKKQLALPDDSAVTGESKFSELGADSLDTVEIVMGLEEEFGISVEEE 120

Query: 121 SAQSITTVQEAADMIEDLILKKSA 140
           SAQ+I TVQ+AAD+IE LI K  A
Sbjct: 121 SAQTIATVQDAADVIEKLIEKNKA 144

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BLAST of Lsi11G004850 vs. NCBI nr
Match: gi|595830628|ref|XP_007206112.1| (hypothetical protein PRUPE_ppa013030mg [Prunus persica])

HSP 1 Score: 152.9 bits (385), Expect = 4.1e-34
Identity = 92/143 (64.34%), Postives = 110/143 (76.92%), Query Frame = 1


Query: 1   MASIT-ASSFCLRSAAPQSRQIAAISKLSGSKRVSFSYQGRNNL---YSRRLQSLRISCA 60
           MA+I+ ASS  LRS  P+S Q  A+S+ +G + +S S  GR++L     +R   L +SCA
Sbjct: 1   MAAISGASSISLRSIPPRSHQNLALSRTNGLRSISLSDHGRSSLSFGLQQRSVRLSVSCA 60

Query: 61  AKPETVEKVSRIVKKQLALPDDSTVNGESKFSTLGADSLDTVEIVMGLEEEFGISVEEES 120
           AKPETVEKV  IV+KQLALPDDS V GESKF+ LGADSLDTVEIVMGLEEEFGISVEE+S
Sbjct: 61  AKPETVEKVCTIVRKQLALPDDSAVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEDS 120

Query: 121 AQSITTVQEAADMIEDLILKKSA 140
           AQSI TVQ+AAD+IE +I K  A
Sbjct: 121 AQSIATVQDAADLIEKIIEKNKA 143

The following BLAST results are available for this feature:

BLAST of Lsi11G004850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ACP1_CASGL	1.7e-32	62.86	Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1	[more]
ACP2_CUPLA	6.5e-32	65.41	Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1	[more]
ACP4_CUPLA	4.2e-31	63.77	Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1	[more]
ACP1_CUPLA	6.1e-30	63.31	Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1	[more]
ACP3_CUPLA	8.8e-29	58.27	Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1	[more]

BLAST of Lsi11G004850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG91_CUCSA	2.0e-56	91.37	Acyl carrier protein OS=Cucumis sativus GN=Csa_2G013290 PE=3 SV=1	[more]
M5W1R0_PRUPE	2.8e-34	64.34	Acyl carrier protein OS=Prunus persica GN=PRUPE_ppa013030mg PE=3 SV=1	[more]
E6YBQ8_ARAHY	5.4e-33	65.22	Acyl carrier protein OS=Arachis hypogaea GN=ACP5 PE=3 SV=1	[more]
A0A151U536_CAJCA	9.1e-33	63.31	Acyl carrier protein (Fragment) OS=Cajanus cajan GN=KK1_007091 PE=3 SV=1	[more]
E6YBQ4_ARAHY	9.1e-33	65.22	Acyl carrier protein OS=Arachis hypogaea GN=ACP5 PE=3 SV=1	[more]

BLAST of Lsi11G004850 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25050.2	9.7e-26	52.32	acyl carrier protein 4	[more]
AT1G54580.1	1.7e-25	51.43	acyl carrier protein 2	[more]
AT1G54630.1	1.7e-25	51.41	acyl carrier protein 3	[more]
AT5G27200.1	2.2e-25	53.24	acyl carrier protein 5	[more]
AT3G05020.1	4.8e-25	52.94	acyl carrier protein 1	[more]

BLAST of Lsi11G004850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442875\|ref\|XP_004139206.1\|	2.9e-56	91.37	PREDICTED: acyl carrier protein 1, chloroplastic [Cucumis sativus]	[more]
gi\|659070522\|ref\|XP_008455529.1\|	4.2e-55	89.93	PREDICTED: acyl carrier protein 1, chloroplastic-like [Cucumis melo]	[more]
gi\|645222390\|ref\|XP_008218144.1\|	3.7e-35	65.73	PREDICTED: acyl carrier protein 1, chloroplastic [Prunus mume]	[more]
gi\|658040409\|ref\|XP_008355800.1\|	3.1e-34	64.58	PREDICTED: acyl carrier protein 1, chloroplastic-like [Malus domestica]	[more]
gi\|595830628\|ref\|XP_007206112.1\|	4.1e-34	64.34	hypothetical protein PRUPE_ppa013030mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0031177	phosphopantetheine binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006633	fatty acid biosynthetic process

Vocabulary: **INTERPRO**
Term	Definition
IPR020806	PKS_PP-bd
IPR009081	PP-bd_ACP
IPR006162	Ppantetheine_attach_site
IPR003231	Acyl_carrier

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009536	plastid
molecular_function	GO:0031177	phosphopantetheine binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G004850.1	Lsi11G004850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003231	Acyl carrier protein (ACP)	PRODOM	PD000887		coord: 91..132 score: 4.
IPR003231	Acyl carrier protein (ACP)	HAMAP	MF_01217	Acyl_carrier	coord: 60..134 score: 16
IPR003231	Acyl carrier protein (ACP)	TIGRFAMs	TIGR00517	TIGR00517	coord: 60..132 score: 1.0
IPR006162	Phosphopantetheine attachment site	PROSITE	PS00012	PHOSPHOPANTETHEINE	coord: 89..104 scor
IPR009081	Phosphopantetheine binding ACP domain	GENE3D	G3DSA:1.10.1200.10		coord: 50..136 score: 1.9
IPR009081	Phosphopantetheine binding ACP domain	PFAM	PF00550	PP-binding	coord: 64..130 score: 1.2
IPR009081	Phosphopantetheine binding ACP domain	PROFILE	PS50075	ACP_DOMAIN	coord: 61..131 score: 20
IPR009081	Phosphopantetheine binding ACP domain	unknown	SSF47336	ACP-like	coord: 59..134 score: 2.49
IPR020806	Polyketide synthase, phosphopantetheine-binding domain	SMART	SM00823	PKS_PP	coord: 62..116 score: 0.
None	No IPR available	PANTHER	PTHR20863	ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED	coord: 1..139 score: 1.9
None	No IPR available	PANTHER	PTHR20863:SF29	ACYL CARRIER PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 1..139 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G004850	Csa2G013290	Cucumber (Chinese Long) v2	culsiB098
Lsi11G004850	CSPI02G03370	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G004850	Cucsa.133640	Cucumber (Gy14) v1	cgylsiB205
Lsi11G004850	CmaCh12G010950	Cucurbita maxima (Rimu)	cmalsiB159
Lsi11G004850	CmaCh05G011710	Cucurbita maxima (Rimu)	cmalsiB715
Lsi11G004850	CmoCh05G011960	Cucurbita moschata (Rifu)	cmolsiB706
Lsi11G004850	CmoCh12G011120	Cucurbita moschata (Rifu)	cmolsiB148
Lsi11G004850	Cla019842	Watermelon (97103) v1	lsiwmB107
Lsi11G004850	MELO3C004338	Melon (DHL92) v3.5.1	lsimeB115
Lsi11G004850	ClCG02G016240	Watermelon (Charleston Gray)	lsiwcgB098
Lsi11G004850	MELO3C004338.2	Melon (DHL92) v3.6.1	lsimedB123
Lsi11G004850	Cla97C02G042070	Watermelon (97103) v2	lsiwmbB087
Lsi11G004850	Bhi06G001482	Wax gourd	lsiwgoB108
Lsi11G004850	Cp4.1LG07g09400	Cucurbita pepo (Zucchini)	cpelsiB659
Lsi11G004850	Cp4.1LG11g09500	Cucurbita pepo (Zucchini)	cpelsiB074
Lsi11G004850	CsGy2G003470	Cucumber (Gy14) v2	cgyblsiB089
Lsi11G004850	Carg23422	Silver-seed gourd	carlsiB271
Lsi11G004850	CsaV3_2G004530	Cucumber (Chinese Long) v3	cuclsiB108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G004850	Silver-seed gourd	carlsiB654
Lsi11G004850	Cucumber (Chinese Long) v3	cuclsiB015
Lsi11G004850	Melon (DHL92) v3.6.1	lsimedB114